RNA id: XM_043239521.1


Basic Information

Item Value
RNA id XM_043239521.1
length 1947
RNA type mRNA
GC content 0.54
exon number 4
gene id LOC122345409
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4287799 ~ 4319735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagggagagatcCTAGAGAGCGAATATTTCGAAACAGTCAAGTGCTCTTGCGCTTTCTCCAAAACAGAAGACAGGATAAACATCTTAATGTAGGTGGAGCTGAGCCGAGACCGCAACCCTTTGATGAGAAAGTTACGCGTTTAACCTACTAGAGTGCGCAATTCTCACACACTTCCTCGCATGAAGAACCGAACCGTCACTTCCAGCCACCCGAGGACCAGCTTCtccacgcgcgcgcgcgccgtGCGGCCAAACCGTGGCGATCGCCCCCCCACTTCCTCCCCGTTTCTTCAAGTTTTCCTCCGCCGCATCCGCGCGCAACTCGCCGCCGGAAAGCCCGAAGACACCCCCAGAGCCGCGCTCGCCTCAGCATGCGTTTGGCGCACGGAGCGCACTCCTGGCGAGCTCTTCGTCGTCGGGCGCAGGGATGATGTTCAACTCGTCGGGCTCGGCGGATTCTCTCGTTCGCTCACCCGAGGCGGCGGCGGAAGTTCTCAATGGTTCCTCACACTTGTTCTACAACATCTCGATGGCCATGTGGAACAAATCCTGCGGGGAACAGTTGCTCGATTTCACCACGGCGGAGAAGATTGTCATCGGAATGATGCTGGCCGTCATCACCACCGTGACGGTGATTGGAAATATGCTGGTGGTGATCGCGGTGTGCGTCGTGAAGAAGCTCAGACAGCCGTCCAACTATCTGCTGGTGTCTCTGGCCGTGGCGGACCTCTCCGTGGCTATCGTGGTCATGCCTTTCGTGATCGTGACGGACCTCACGGGAGGAAAGTGGCTTTTTGGAGAGGTCTTCTGTAACATCTTCATCGGCATGGATGTGATGTGCTGCACTGCCTCCATCATGACGCTGTGCGTGATCAGTGTGGACAGGTATCTTGGCATCACCCGCGCGTTGACCTACCCTGCTCGACAAAACGGCCAGCTGATGGCGAAGATGATCTTTGGTGTGTGGCTCGTGTCCGCCTCCATCACCCTGCCGCCGTTCTGCGGCTGGGCGAAGAACGTGAACACGGCCGGCGTTTGTCTAATCAGCCAGGACTTCAGCTACACCATCTACTCCACCGCCGTGGCCTTCTACATCCCCATGATCGTCATGCTCTTCATGTACTACAAGATCTTCAAGGCCGCCAGAAAAAGCGGCGCCAAGCATCGCTTCACCGACTTCTCCCGTCGGGATCGTCTGGAGACCGTCGCCAGCGAGGCTCTCCGAATGCAAGGCCTAAAACCCCAACATACGCCTGGCGTAGCCGAGGAGTGCGCCGCTCTTTCTCGGCTGCTCAGCCGCGAGCGACAGAATATCTCCATCTTTAAGCGAGAGCAGAAAGCAGCTACGACGCTGGGCGTGATCGTCGGGGTTTTCGGTATTTGTTGGCTGCCGTTTTTCATTCTGTCAACAGCGAGACCATTTATATGCGGGGTCAAGTGTAGTTGCATACCAATATGGCTGGAGAGGACGCTGCTGTGGTTTGGATATGCCAACTCGCTAATGAACCCCTTCATATACGCTTTCTTCAACCGGGACCTGCGCTCCACGTACAGAGACCTGCTCCGCTGCAGGTACCGGAACATAAACCGCCGGCTGTCGGCTGTAGGTGTGCATGAAGCACTGAAGGTTTAAAAGCACACACTTCAGAAAGGACTGAATCACTGTCAGTGGAGGAAGACTTTGAAGCAGAACCGTGTGCACTGATACGTCCACTTATGGGATTTTTGCAGCGACGGTGTGAACAAAAGACGGAATCAGAGCCATGTACTTATTCAGAACACTCATATTTCCATTGAGATGTTTGATCGCTAGTCATTTCGTTATTTGTAGCCTATACTGTATTACACCTGATTTCAGTGGGCTTTAAGATCTTCTACAATATTCAGTTGATTTTTGAGACATGCGAGTAAAGGTTTGACTcatttgaaaattattattattatcat

Function

GO: NA

KEGG:

id description
K04163 HTR7; 5-hydroxytryptamine receptor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48755 lncRNA downstream 189426 3607467 ~ 4098373 (-) True G33109
XR_006250997.1 lncRNA downstream 236327 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA downstream 236330 4050915 ~ 4051469 (-) True LOC122345411
XR_006250999.1 lncRNA downstream 318835 3967856 ~ 3968964 (-) True LOC122345413
TU48808 lncRNA downstream 383253 3898591 ~ 3904546 (-) True G33140
TU49028 lncRNA upstream 540264 4859999 ~ 4902402 (-) True G33300
TU49044 lncRNA upstream 594146 4913881 ~ 4915751 (-) True G33310
TU49071 lncRNA upstream 705210 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 712828 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 714376 5034111 ~ 5053903 (-) True G33333
XM_043240860.1 mRNA downstream 94976 4144856 ~ 4192823 (-) False LOC122346168
XM_043239522.1 mRNA downstream 145896 4137531 ~ 4141903 (-) True LOC122345410
XM_043240840.1 mRNA downstream 389221 3878650 ~ 3898578 (-) True piwil2
XM_043239160.1 mRNA downstream 413911 3849493 ~ 3873888 (-) False slc39a14
XM_043240871.1 mRNA upstream 30492 4350227 ~ 4370478 (-) True LOC122346182
XM_043238426.1 mRNA upstream 137084 4456819 ~ 4462417 (-) False atad1a
XM_043238425.1 mRNA upstream 137084 4456819 ~ 4462417 (-) True atad1a
XM_043238166.1 mRNA upstream 168106 4487841 ~ 4557844 (-) False galnt9
XM_043238165.1 mRNA upstream 168106 4487841 ~ 4557843 (-) True galnt9
TU48820 other downstream 94718 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 94718 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 94718 4144927 ~ 4193081 (-) False LOC122346168
TU48805 other downstream 393324 3885425 ~ 3894475 (-) False piwil2
TU48804 other downstream 393324 3885550 ~ 3894475 (-) False piwil2
TU48850 other upstream 302755 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 1111529 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 1636564 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 2504436 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 2603695 6923430 ~ 6943192 (-) True usp20

Expression Profile