RNA id: XM_043239522.1


Basic Information

Item Value
RNA id XM_043239522.1
length 1079
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC122345410
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4137531 ~ 4141903 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACGGGGAGGGTCCTCGGTCAGCTGTCGTGAGCCTCCGAGCACTTTCTGGACTTTGTAGACCGGTAAATCACATATAAACCAGTGGAACGAGTTTACATCGTCAGTAAACTTCTAGGAGCCTTACGTGCGCGCGGTATTACGCGTAAACTTGGGTGCGTAATTAAGCGCCTTGAGACTTTTTCAAACTGCGTTCTTTTTCATTCGTTTTGAACGAAAAAGTCACTTTTTTCCCAGTTTCACGATGGCAGAGGGGGATTACTACACTATGGGCAACCGGCAGAGGATTCCGAGGGATCCGTTTCGCGAACAGTCGCTCTCATCTCGATTCATGGACGATGACTTTGGACTGCCGCCTTTTCACGACGAGTTATCTATGGACTGGCCCGGCTGGGCGCGACCTCGACTGAGCGCCCGCCTTGACGCGCCGTGGACGGGCCCCTTGCGCTCGGGCTTCCCGCGGGGCTTCAGCGCCAGATACGGCGAGGGTCCGCGCAGAGCCAGCGCTCCTCCGTGCAACCCGGACGAGCCGTGGAAAGTGTGCGTGAACGTGCACAGCTTCAGACCCGACGAGCTTAATGTCAAAACTAAAGACGGTTTTGTAGAGGTGTCAGGGAAGCACGAGGAAAAGCAGGACGAGGGAGGAATCGTCACCAAAAACTTCACGAAGAAAATTCAGTAAGTGTCGTGATTGTATCAAAAGTTTTCCGGAGGCTTCTAGAATGATGAAGCGACTTCCCGAGGAATGTCACTCGGAGTTATTAAAGCGACACAAAGCCTTCCCGCTCCTCCACCCACCCCGACCTCTCCGCTTTCTTCTCGCTCTTCAGAGTCACGGCAGACGAAAAGAATCAAAGTTCGGAGATAAAATAGAAAAGGAAACTCTTGTTAGGCTCAGACAACATATCGTGTAGCTCTGATGTCTGCAGTAATTAAGCGACATAGtgatttgatttttcttttcttttttttcgtcGCCGTGCTGTTTCTCTGACAGACACCGAGAAAGAAACTCtaagaaagaaaaggaattaAATTATTGAACAAACGCGGCGCTATTTTAGCATTCTAACGCAAGAG

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48755 lncRNA downstream 39158 3607467 ~ 4098373 (-) True G33109
XR_006250997.1 lncRNA downstream 86059 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA downstream 86062 4050915 ~ 4051469 (-) True LOC122345411
XR_006250999.1 lncRNA downstream 168567 3967856 ~ 3968964 (-) True LOC122345413
TU48808 lncRNA downstream 232985 3898591 ~ 3904546 (-) True G33140
TU49028 lncRNA upstream 718096 4859999 ~ 4902402 (-) True G33300
TU49044 lncRNA upstream 771978 4913881 ~ 4915751 (-) True G33310
TU49071 lncRNA upstream 883042 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 890660 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 892208 5034111 ~ 5053903 (-) True G33333
XM_043240840.1 mRNA downstream 238953 3878650 ~ 3898578 (-) True piwil2
XM_043239162.1 mRNA downstream 263642 3849493 ~ 3873889 (-) True slc39a14
XM_043239160.1 mRNA downstream 263643 3849493 ~ 3873888 (-) False slc39a14
XM_043239161.1 mRNA downstream 263643 3849493 ~ 3873888 (-) False slc39a14
XM_043239163.1 mRNA downstream 270957 3849493 ~ 3866574 (-) False slc39a14
XM_043240860.1 mRNA upstream 2953 4144856 ~ 4192823 (-) False LOC122346168
XM_043239521.1 mRNA upstream 145896 4287799 ~ 4319735 (-) True LOC122345409
XM_043240871.1 mRNA upstream 208324 4350227 ~ 4370478 (-) True LOC122346182
XM_043238426.1 mRNA upstream 314916 4456819 ~ 4462417 (-) False atad1a
XM_043238425.1 mRNA upstream 314916 4456819 ~ 4462417 (-) True atad1a
TU48805 other downstream 243056 3885425 ~ 3894475 (-) False piwil2
TU48804 other downstream 243056 3885550 ~ 3894475 (-) False piwil2
TU48454 other downstream 1124712 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 1177354 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1531616 2587553 ~ 2605915 (-) False add2
TU48820 other upstream 3024 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 3024 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 3024 4144927 ~ 4193081 (-) False LOC122346168
TU48850 other upstream 480587 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 1289361 5431264 ~ 5431394 (-) True LOC122346225

Expression Profile