RNA id: XM_043239523.1


Basic Information

Item Value
RNA id XM_043239523.1
length 4657
RNA type mRNA
GC content 0.51
exon number 8
gene id nlgn3b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11304365 ~ 11322863 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtttcgcTGCCGGTTTGTAAGCTCGCTCGTGTCCCTCCGGTTGCTTGGCAACGCGCGTGGCAGTGGGCGCTCCTGACCTTGCGTCCGCGACCGCGCACAGCGCGCGCGCTTAAAATAGACCCGGGGAGATTGACGTTaattgaaaataagaaaaacgcAAGAAGAGCCGAGCGCCGTTCACGCGGCTCGACGGGGGAAAAAGGGGGCATGTTGGATGGTGGGAACGATGAGATATGAGATTATTACAGTGCAAGCTCGGATGCGTTACCGGCTGAGCGAATCGGCAGgTTTGTGCTGAAAGGATCTGTGTGCTGGAAAAATGAACCGCTTCACCTGCTGAATTCATCAACCGGCATGGAGCACTTGGTGGTGCACACCTGGCTGCAGAGCTGCCCACTGGATCTGCCTGAATGCGTGGCGCGTGCTTGTTTTTGAGCGCTCGAGTGTAATTGTGTCGAATCAGAGAGCGTCACTGAGCTACAGACAGAGATTTATCAGTGTGAACGTGTGCTGTGAAGAGGCACCATGTGGCACGCACAGTCAGCAACTTACCTGCCGCTTACCCACCTGCTCCGCCGACCTCTGAACTTTGCACTGCGTTGGCTTCTTGTTTGGTTGATGTGGTCAGTCTCCATGGCAACTGCACTGACCTACCAGCCCACAGTAAATACAGCACTTGGCAGGCTAAGGGGGATGCGGGTGGCTGTGGCAACGGAGGGTCTGGGCCCTGTGGATCAGTACCTGGGTGTGCCTTACGCTGCCCCACCTGTAGGAGAGAAGCGCTTTATGCCTCCCGATGCTCCTTCGGCCTGGTCCGGCGTACGGAACGCCACCCGCTTCCCTCCCGTCTGCCCACAGACCGTTCGCAATGCGGTGCCCGATATCATGATGCCTGTCTGGGCCACCTACAACCTTGACACGGTTGCTACGTACCTGCAGGAGCAGAGTGAGGACTGCCTGTACCTTAATATATACGTACCCACACAAAGCGgTACAAAGAGAACGGGCGACATGTCAGCTGACACAGAGCGTTCGGAGGATGATGgGCTAAGGGATTCTCGAGATGACCCACGTCCTGTGATGCTGTTTATTCATGGTGGCTCGTACATGGAGGGCACAGGGAACATTATGGACGGTAGTGTGCTGGCCAGCTATGGCAATGTCATCATCATAACCCTCAACTACAGAGTGGGGATATTAGGGTTTTTAAGCACAGGTGACCAGGCCGCTAAAGGGAATTATGGTCTCTTGGATCAGATTCAAGCTCTCCGCTGGATCAACAAGAATATTGGATATTTCGGCGGTGATCCGGGCCGCGTGACCGTGTTTGGCTCAGGAATCGGAGCGTCCTGCGTCAGTTTGCTCACTCTTTCACATCATTCTGAAGGTTTGTTTCACAGAGCAATCATTCAGAGTGGCTCAGCACTGTCCAGTTGGTCAGTGAACTATCAGCCTGTGAAATACACACGTCTCCTCGCAGAGCGCGTTGGATGTAATGTCCTCGACACTCAAGATCTGGTCCTCTGCATGCAGAAGCGTAGCTACAGGGAGCTGGTGGAGCAGGAAATTCAGCCAGCACGCTTCCATGTGGCCTTTGGCCCTGTCATTGACGGTGACCTCATCCCGGATGACCCTGAAGTCCTCATGGAGCAGGGAGAGTTCCTTAACTATGACATCATGTTGGGCGTTAACCAGGGGGAGGGATTCCGCTTCGTAGAGGGTGTGGTGGAACCAGAAGAGGGCGGAGTTACTGGCTCGGATTTTGACTTCACCATATCAGATTTTGTAGACGGTCTCTACGGTTATCCAGAAGGGAAGGACACTCTCAGAGAAACCATTAAGTTCATGTACACAGACTGGGCCGATCGAGACAATCCCGAAACCCGACGTAAAACCCTCGTGGCCATGTTTACAGATCACCAGTGGGTGGAGCCAGCTGTGGTGACGGCTGACCTGCATGCACGTTATGGTTCTCCGACCTTCTTCTATGCATTCTACCATCACTGCCAGAGCCCCATGAAGCCTCCATGGGCAGACTCCGCACACGGCGATGAGCTGCCCTACGTCTTTGGAATTCCTCTTATTGGTCCGACAGAACTCTTCCCCTGCAACTTCTCCCGCAATGATATCATGCTGAGCGCCGTCGTCATGACCTACTGGACCAACTTTGCAAAGACCGGggATCCGAACAAGCCAGTTCCTCAGGACActaagttcatccacaccaagGCAAACCGTTTTGAAGAAGTGACATGGGCCAAGTACAGTCCTCATGACCAGCTATATCTGCACATTGGGCTGAAGCCTCGTGTTCGTGATCATTATCGAGCTACTAAAGTGGCCTTCTGGAAGCATCTGGTACCTCACCTGTACAACCTGCATGACATGTTCCACTACACATCCACCACCACAAGGGTCCCACCTCTTCTGACCACACACAGTTCCCACAGCGCTACTCCTCGCCCGGGGGGCAACAAGGCTCGTACCCCAGGTAAGCAGCCCCCCCAATCCACAGCACGCAGCGGGCCGCTGGTCATCGCCAACCCACGGGATTACTCCACAGAGCTGAGCGTCACGATCGCCGTTGGAGCATCGCTTCTCTTTCTCAATGTCCTGGCCTTCGCTGCGCTCTACTACCGCAAGGACAAACGCAGCCGGCAGGACACGCCCCCTCAGTCCGCCCCCCAGCGCCAGACCCCGCCCAACGATCTCAGCTACACGCCCACTTCCATCTCAGGAGGTAACCAGGAGGAGGGCTCCCTGTGCGACCCTCTCCGTCTGACCCCAGCATCATCTCCGCGGGATTACGCCCTCACTCTCCGCCGCTCGCCGGATGACATCCCGCTCATGACGCCCAGTTCTGTCGCGATGACGCCGAACAGCGGCACTATGACCCCCAACACTGTCACCTTGACGCCCAATAGCGTTACAATGACGCCCAACACCATTACCATGTCGCCCAATTCTTTGATGgggtatcccagcatgcaccctTACAACACCTTCACGCACGGATACAACTCCACCAGCCTGCCCCACCCGCACTCCACAACACGCGTATAACATGCAACAGAAACTCCACACGCCGACACGCAACACTCACGCCCCACAAATCCTTATTACTGTAAACCAGATCAAACCGGTGCAAACTGTTAGCCAGTATTCAAAAGTATAAACAGCAGGTGGACCCAATACATAACATGAGCACAATCACCTAGAAGAATCAGCGTAAACCGGAAGGAAGTGTCACCGCAGCACACTAACACAAGCAGTTCGGCTCAGTATGAACGCACTGCTTCGTACGCGTCTGACTTTTGTCGACTTTCACGTTATACGAGCAGTTACGAAACTTCTCCGTGGAATAAGATGGGGGAAAAAGGAGCAGTTGTAGTACCGCTGCCGCCTCTGGGTGGTGCAGCAAGACTCTTAAAGACCCCGCAGGAACAGTAGGGGGCGCTGGAGTCCCATCAGTGGTTCACCATTACGAACCGACCAAGCACTTATTCTAagatatgtaataataataacctgtaataacaaacatattattaatGGCTATTGTACAGTATAACATATATTAACGTCAATGTACAGACAGCTTTTTTGAAtgtgtcagaaaaaaaaataatttctaatcGTTTTTAAACTCAGATTATATCCATAGCAAGAAAGGTCATTCGAAGCCCGATTGATTTTCgatcctgatttttttttttccctttctttttaaaagtactaTTTTATAGCACatttctctctatctttctctctctctctctctctgtctctctgtctttctttcttttctccccCTTTCACTCCGTGGACGGGTGCGTTGTGCATTTTACTTTTGGCGTGCTCTATCCATTTAGTTGTAGATTACGCAAAAGGATCGCATTTTAAAAGAGCTGAATGCGTGCAAAGATTATTCGTGAGCGCGAGAGAGCGGATGTGTACAATTTTCAAGTTAAGcatctttaaataatttgtgtCTTGCTAAATGTTATCATTTTGTGAAAACGCTTTTCGATCATTTGGAATCTGTATTGTATCTGAGTTTGTTCGATATGTTTTGTGAAGATGTTCGAACTCGATTTGAAAGCATTgcgtttctttttctctgtatttATCGGTGATATGACATCACTCATGCAGTAATATGACATCACTCATGCTGTGATATTACATCACTCGCGCCGTGATAGGACATACAGGCTTTGCTGAGAACTTGCGATGTTAATCTTTTCTATAAAACATGAATGTGGTGATTTGTACCGAACACAGGGCTTTCTCCGATGAAGGTCGTTCTATAATAATATCGTGTTTACTATGGGTCTGCACAGAGTTTGCACAGGGGATGCGGTCGTGTAATCATGGTGTCATATCCTGCCAGATGGTTAGATTCTCCATGTTACCCATGTTAACCAACCCTGCCATAATTTTTGGGCCAAATTTGCGATACAGTTTCCTTGGTAACCAGCAGAAAGTTTGTCTGTTAACGTGTTTGTGTGAAAGTCCAACAGCTTTATAAAAGAATTTGCGGTATTTACAACCACTTGAGTTCATCCGGACTCTGAAGAGGAAACACGATGGCAAACGAACGAAAGCAGAAGCGTGTTTCTGCTGGACGAGGAGGAGGGTTGACCTGTGTGCTCA

Function

GO:

id name namespace
GO:0007416 synapse assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0042043 neurexin family protein binding molecular_function

KEGG:

id description
K07378 NLGN; neuroligin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51957 lncRNA upstream 934 11294707 ~ 11303431 (+) False gria3a
TU51940 lncRNA upstream 94960 11206316 ~ 11209405 (+) False G35274
TU51941 lncRNA upstream 95911 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA upstream 95911 11206316 ~ 11208454 (+) True G35274
TU51930 lncRNA upstream 116671 11187254 ~ 11187694 (+) True G35267
TU51991 lncRNA downstream 59807 11382670 ~ 11387096 (+) True G35304
TU51992 lncRNA downstream 62028 11384891 ~ 11387096 (+) False G35304
TU51993 lncRNA downstream 62028 11384891 ~ 11387170 (+) False G35304
TU51998 lncRNA downstream 82665 11405528 ~ 11405761 (+) True G35309
TU52002 lncRNA downstream 91178 11414041 ~ 11414688 (+) True G35311
XM_043239766.1 mRNA upstream 963 11266665 ~ 11303402 (+) True gria3a
XM_043239763.1 mRNA upstream 963 11266673 ~ 11303402 (+) False gria3a
XM_043239764.1 mRNA upstream 3953 11266645 ~ 11300412 (+) False gria3a
XM_043239765.1 mRNA upstream 12187 11266642 ~ 11292178 (+) False gria3a
XM_043240932.1 mRNA upstream 44885 11250625 ~ 11259480 (+) True cchcr1
XM_043239527.1 mRNA downstream 1880 11324743 ~ 11330306 (+) False plp1b
XM_043239524.1 mRNA downstream 1893 11324756 ~ 11330306 (+) False plp1b
XM_043239525.1 mRNA downstream 2476 11325339 ~ 11330306 (+) True plp1b
XM_043238870.1 mRNA downstream 39203 11362066 ~ 11364940 (+) True iqcd
XM_043239808.1 mRNA downstream 77586 11400449 ~ 11403283 (+) True uprt
XR_006251083.1 other upstream 242051 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 371202 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 573313 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1186239 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1505007 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 601365 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 926275 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 926275 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1191213 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1380508 12703371 ~ 12705241 (+) False iscu

Expression Profile