RNA id: XM_043239525.1


Basic Information

Item Value
RNA id XM_043239525.1
length 2792
RNA type mRNA
GC content 0.43
exon number 7
gene id plp1b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11324743 ~ 11330306 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGTTCGAAATGGGCAAATATTTAATGCAGTCGCATTAAGGattcatatgtatgtatgcattctctttttcttttggatAACAACTTTTCAGCCCTTTTCAGAGTCACATCTTCTGTTTGAACTGTAACAGCATATTGTCTGCTCAAAACAAGGTATTATCCAATCAAAAATCTTAACttaatctgtcatttttatactctcatgttgtttcaaacctgtatacgtttatttctttctgcaaaacacaaagaaaaactggTATCCAAAGGATATTGGACCACACTGAAATTCGTTACGCAggcgaataaaaaaaaatcatctgttttaacaaacataaaaatagatatcttcttttgtgttccacccATGAAAGTCCTAgagatttggaacaacacgagggtgagtaaatgatgacagcatgttcgtttttgagtaaatatccctttaataaaGTATGGAAGCTTGGAGAATGGATGGACCTGAAAGCATTTCCGTATTCTCAAACAGAAGATGAAAGTTAGGTTCAGGTTATGAAAGTGTATGTTTTACATAGCCGTCAGATTATTGTGAGCGACAGGCTTGTTGAGaagaaaacagtttaaaaagagTGTAAAAGACTGGTTGACCTGCCATGATCCCAATTGTAACCCCGGTGGTGTCagtatgtgtctgtctgtgccGCTATGAGTGGAAACGCAATGACGTACTCCACTGCTGAggcctgtgagtgtgtgtgtgtgtattttgtttgttcacaatgatagttgttgttgttaaaacaAAAGCCATTATGACTATCACAAGTGCTTCTTTTTCTGACCACAAAACCTCAAACACACATGAAAACGCACGCACCCCTCCCCCAAATCTCACCCTGACACCAGGCTactcaggagagagagagagagagagagcgagggagggaaagaaggagagaaagaagcGAGGGAGGGAGAGGAGCAGCTTAAGCGATGCATTTTTTCTTCCTTGAGGTGGACAGTGGAGTGtatctgaagaaagaaagagaaattaCTTCCTTCAGTTTAGACATCACTGCAGCAGAGGACAGAAATCTCTCTGGAGTGAGTGGACAAGCGTCTGCGCGGCTCTCTCCTGGCGTGGGTTCGACTCAGCAGTGTCGATGTTTCCAGTGAAACAGCCGTGGTTGTGTAAAGCGCTAGGTTGCTATGACTGCTGCATCCGCTGCCTGGGCGCCGTGCCCTACACCAGCCTGCTGGCCACCCTGCTCTGCTACACCGGTGTGGCGCTCTTCTGCGGGGGAGGGCATGAGgcgctcactcacacacgcacactcgtAGAGCTCTACTTCGCAAGGGACGTTCAGGACTTCATAGTGCTGGCAGACTTtATAAAATATTTCCAGTATGTGATCTACGGTCTGGCCTCCTTCTTTTTCCTCTATGGATTGTTGCTTTTGGCTGAAGGTTTTTACACCACCAGTGCAGTAAAGCAGACGTTTGGAGAATTCAGGAGCACCAAGTTTGGGCGCTGCCTCAGCctgactTTCATAATCCTGACATACGTGCTCGCCGTGATCTGGCTGGTTGTCTTTGGCTTCACAGCCATTCCCGTGCTCTTCTTCATTAATATGCAAAGCTCCTGTcacaaaatcaacattttgtcGGAAACCACCTTGTTCAACCAGCAAGCAAGGGTCTGCATGGACGCACGCATGTATGGGTTTCTTCCCTGGAATGCTGTGCCGGGGGTTGTTTGTGGAAATACACTGGCAAGCATCTGCAAAACACCAGAGTTCTATGTGACCTATGACCTTTACATCTGTGCATTTGCTGGAGCCGGAATCACTCTTCTTGCCCTGTTTGTTTATGTGGTTGCCACCACCTACAACTACGCTATTCTGAGGTTCCTCGGAAGGAAGGGACTCCGTTGCTAGGTTCGGTGTTGCTAGGCCCGCTTTCCTGTCGCCCGTGGCTGCAGTTTGAGTGATGTCATCACTGTGGCTGTTGAGGAAACGCAAAAGAGCTCCATGAAGCCCCTGCAGAGTTCTGTCATACACACAAACCACTGGTTTCATGAGACAAATTAGTACAAACTACACTAAGGTAGACTTACCAATGAAAATACAACAATTCATTGAGTCACTAAATGTAAAACCACAAACTACTGTACAGTGGATctctggaggagtggaatctagcttctgtatttcttcatttgtctcctctctctctctctctgtctttgctGCACACATTATTATATACTCTCATggccatttattcattttaatgattgtATTCATTGTGCTTTGTGGACTTATTAATTGCGGTTTGCCAGGATTTTAGCCTCTCttgtctctctttcacacattCCATCTTTTTAAGAGAGTTTGAGTGTGTTGTTTCCTCAGTCAGATGTGGGTGTTTTATTCTGTGTGACACACATGGAAAAACAGCGCTGTAGCGAGCAGCTTTCTTTGTGTCAATTTGAATTCAGTATTTACAGACATTCTTAGTGTCACCTTCTGTTTGATGATATGTTTGTGGGTGTACTTGTATATTTTTGACTAACTGTGGCAATATGCTGAACCTGATCAATGATGGTGCTCGATCCAAgaaactaatgtttttttttaaattgttcacTCACTAGCACACTTCCgtaaactgaaatgtatttctACAGTAAGATGGATAactgtaaatgattaataaaacatgcagaATTCTGACTAAAGTGTATTTACATAAACTGTGTGTTGACGTCATTGAAACTCatgcaataaaaagtaatttcctTTAATGAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51957 lncRNA upstream 21908 11294707 ~ 11303431 (+) False gria3a
TU51940 lncRNA upstream 115934 11206316 ~ 11209405 (+) False G35274
TU51941 lncRNA upstream 116885 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA upstream 116885 11206316 ~ 11208454 (+) True G35274
TU51930 lncRNA upstream 137645 11187254 ~ 11187694 (+) True G35267
TU51991 lncRNA downstream 52364 11382670 ~ 11387096 (+) True G35304
TU51992 lncRNA downstream 54585 11384891 ~ 11387096 (+) False G35304
TU51993 lncRNA downstream 54585 11384891 ~ 11387170 (+) False G35304
TU51998 lncRNA downstream 75222 11405528 ~ 11405761 (+) True G35309
TU52002 lncRNA downstream 83735 11414041 ~ 11414688 (+) True G35311
XM_043239523.1 mRNA upstream 2476 11304365 ~ 11322863 (+) True nlgn3b
XM_043239766.1 mRNA upstream 21937 11266665 ~ 11303402 (+) True gria3a
XM_043239763.1 mRNA upstream 21937 11266673 ~ 11303402 (+) False gria3a
XM_043239764.1 mRNA upstream 24927 11266645 ~ 11300412 (+) False gria3a
XM_043239765.1 mRNA upstream 33161 11266642 ~ 11292178 (+) False gria3a
XM_043238870.1 mRNA downstream 31760 11362066 ~ 11364940 (+) True iqcd
XM_043239808.1 mRNA downstream 70143 11400449 ~ 11403283 (+) True uprt
XM_043238441.1 mRNA downstream 137414 11467720 ~ 11471124 (+) True si:dkey-237j10.2
XM_043240208.1 mRNA downstream 142806 11473112 ~ 11512262 (+) True si:ch211-26b3.4
XM_043238164.1 mRNA downstream 184103 11514409 ~ 11518903 (+) True apool
XR_006251083.1 other upstream 263025 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 392176 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 594287 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1207213 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1525981 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 593922 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 918832 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 918832 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1183770 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1373065 12703371 ~ 12705241 (+) False iscu

Expression Profile