RNA id: XM_043239530.1


Basic Information

Item Value
RNA id XM_043239530.1
length 2077
RNA type mRNA
GC content 0.43
exon number 11
gene id tp53
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10992741 ~ 11003177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGACTCATGAAGATGAACTGTTTTAGAAAAACAAGACGTACGGACAGCAaaagaaacagttttttttagaattgattataacagggtttttttaaaaaaacgagaTGCATCAAAACGAAAGTGAAGTCGCAACCAATGAATGGGTCTGACTCTTCGGCTCTTTGGCAGGAAAGTACTGCATCACTGGGTACCGATGATTatggtttgtgtttattttttcgAGTTCTGTCTTCATATAAATCAATTTTGCGAATCTAAAACAAGCCATGGCAGACAGTCAAGAATTTGCTGACCTGTGGGAGAGAAACCTCATTTCCACTCAAGAGGCTGGCGCTTACTTGGATTTAATGAATGATGAGCAGTTTCTTCCAAATTCTTTCGACCCAAATATCTTCGATAATGTGCTGACAGAACCGCCTCAGCCATCCACCTCCCCTCCAACCCCAACTCTTCCTGTTGCCACCGATTATCCTGGAGAATATGGCTTCAGACTGGGATTCCCTCAATCTGGCACAGCCAAATCTGTGACCTGCACTTACTCCACTGATCTGAATAAGCTATTTTGCCAATTGGCGAAAACTTGTCCAGTTCAGATGCTGGTGGACGTTCCCCCTCCCCAGGCCTCGGTGATCAGAGCCACATCCATTTATAAGAAATCTGAACACGTGGCTGATGTGGTCCGTCGATGTCCCCACCATGAGAGAACCCCAGATGGTGATGGATTGGCTCCTCCTGCTCACCTGATGCGAGTGGAAGGAAACTCGCGTGCTATTTACAAGGAGGATGATGTGACATCAAGGCACAGTGTGGTGGTTCCCTACGAAGCCCCTCAAGTGGGAGCGGAGTATACCACAGTGTTATACAACTTTATGTGCAACAGCAGTTGCATGGGTGGGATGAATCGCCGGCCCATCCTCACCATCATCACTCTGGAGACTCACGACGGTAAGTTATTGGGCCGTGGGTCTTTCGAGgtacgtgtgtgtgcgtgcccaGGCCGAGACAGAAAAACTGAGGAGAGCAACTTCAGGAAAGACCAGGAGACCAAAACCTTGGGCAAGACCCCTTCTGCTAATAAACGTAGTTTGACGAAAGAGTCGACTTCATCTTTGTCTCGACCTGAGGGCAGTAAAAAGGCCAAACTGAGCACAAGCAGCGATGAAGAGATTTATACCCTGCAGGTGAGGGGCAAAGAaagatttgaaatgttaaagaaGATTAATGACAGCTTAGAATTGAGCGATGCGATGCCTCCATCAGAAGTGGACAGATACCGGCAGAAAATACTCTCCAAAGGCAAGAAGGAGAAGGAAGGCCAGACACCTGAGCccaaaagagggaaaaaactaatggttaaagatgaaaaaagtgACTCTGATTAGGATGGCGGGATGCTTGAATGcctttcttttgcttttgtttgaccAAAACTGTTTGTCATAGGGAGCATTTGGTGAATTGCAGATCCATGATTCCTCAGTCCTGTATGTCATGTTATCTTGTTCACTCCTCTGGGACCTTTGTAAGTCAGCTGATTAAGAAGTGGTCTGTATGAATGAAGATAGTATTGGCCGTAGTTCTCTATCAGCACTGGAGGAGCAGTGCTGGCCCATCATTTTGCAGACCCAACAGCAATGAGGTTGAACTATGTGTGGGGTCATTCCTGTTGTAGGGCAGTGCAGGTCACTTTCCTCCCAGCATGTAGTGGTAAGGTTGTAGAATTGTATTGTCACTGACTTATTGGATGACCactttgctgaaaatgtattaatgccAGTATTTTGTatccagatttttttctttcttttttttagagagaGGACTATTACTGAttagatgattaaaaaaaaaatcataaatggtTGCAAGCcaaattactgtaataaaaataattacattttgttttggaaatCCTTTTTAATTAGGTTGATTTCCGtttataactaaattaaatcagcaAGAACTCAGGGCATGTCCCTCCTGGTAATCTTGATAATCCTATTCTACTGTTTCAActtgatgtatatttttatgctgttttttttttttctatctttacTGTATACACAtctttt

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051262 protein tetramerization biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52135 lncRNA downstream 29139 10960311 ~ 10963602 (-) True slc25a15b
TU52137 lncRNA downstream 29139 10960311 ~ 10963602 (-) False slc25a15b
TU52130 lncRNA downstream 53255 10938695 ~ 10939486 (-) True G35388
TU52118 lncRNA downstream 58996 10932350 ~ 10933745 (-) True G35385
XR_006251094.1 lncRNA downstream 106003 10875648 ~ 10886738 (-) True LOC122346117
TU52162 lncRNA upstream 35513 11038690 ~ 11039232 (-) True G35410
TU52175 lncRNA upstream 57761 11060938 ~ 11062888 (-) True G35422
TU52176 lncRNA upstream 59723 11062900 ~ 11064447 (-) True G35423
TU52205 lncRNA upstream 99476 11102653 ~ 11124347 (-) True G35441
TU52234 lncRNA upstream 111833 11115010 ~ 11119227 (-) True G35467
XM_043239661.1 mRNA downstream 12815 10973213 ~ 10979926 (-) False si:ch211-114c12.2
XM_043239660.1 mRNA downstream 12815 10973213 ~ 10979926 (-) True si:ch211-114c12.2
XM_043239662.1 mRNA downstream 12821 10973213 ~ 10979920 (-) False si:ch211-114c12.2
XM_043239663.1 mRNA downstream 12824 10973213 ~ 10979917 (-) False si:ch211-114c12.2
XM_043239666.1 mRNA downstream 23623 10963601 ~ 10969118 (-) False slc25a15b
XM_043240249.1 mRNA upstream 1657 11004834 ~ 11009952 (-) False gps2
XM_043240246.1 mRNA upstream 1657 11004834 ~ 11009937 (-) False gps2
XM_043240248.1 mRNA upstream 1657 11004834 ~ 11009937 (-) True gps2
XM_043240247.1 mRNA upstream 1657 11004834 ~ 11009932 (-) False gps2
XM_043239736.1 mRNA upstream 7143 11010320 ~ 11012410 (-) True gabarapa
TU52116 other downstream 66578 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 118677 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 531032 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 657399 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1590118 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 416778 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 460654 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 580603 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 798137 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 1162233 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile