RNA id: XR_006251000.1


Basic Information

Item Value
RNA id XR_006251000.1
length 1982
RNA type transcript
GC content 0.50
exon number 15
gene id eng
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29614719 ~ 29655061 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGTACCGTGCGTGAAAGTCGCTTTGCCGCGTGTTTGCTGtgctgtgtgtgagaggagCGCTGTCGCGTGAAGTGGGAGGGTCAGTGCTGCTGATGATGTCAGTGCCGAGGGTTCAGCTGGACTGAGTGACTGACTGACCGCTGGATCTCATCTGAACCGCCGGAGCCGTTCCCAGCGCGAGGAAGTGTTGAGTGTTGGATATTCTGGTCACTCTTCTACAATATCAGCCACAGTTGCCGGGTCCATCAGAAGAGGCACGTTTAGAGCCGAACAAACATCTGAACATGAGGAGCATCATATGTTTCATATGTGTTTTTCTATGTCTGAGAACCGCAGCTTCAGATTCCAGTCCGTTCTGTGAGCTGAATGATGTTCCCGGACACAGCAACGAGTGGAtcgtcctggaggaaatgtcTCTAGGATGCTGGACGAACTTCATCAGTCAGGACGGGAAAGAAGTCCACATCCTCAAGCTGCTGAAAGGACAGCAGTCAGTATCAGAACTCAACTTAACAGCGGCAAACCCATCAGTGGTGATCATCACCTCTAGCAGCGCACAAACCATCTTGCTTCACGACAGTCCCGCAGTGAACATCTACGTGACAAACGGGACCTCAATACACTTAATCCTGTCAAATAGCGGAAGTCCAAAAACACACGTCGCCCCGTTCGCAGACAGCGATTCCGAAGTTCTGGAATGGGCAGCAAAGACGTTTGGTGGAGTGACGTCCTTCACCACAGCACGAGATCCCGCGATCATCACTTTCACCGGGATAACAGGTGCTCAGCGACCATCAACGTGTGACCTGCAGCCGGAAGCACAAGCAGATAAACAGTTCATTGATCTGAAGCTGACACTTCCATCTGATGAGCTGAAATCATGCCACACAGAGCTTTCTAAAGAACAACTGCACGTGATCAATATTCCTGATGACATCAAAATACGgAATGTATCTGTGCATTTACCACACAACTCTAAAGTGGTCCTTAGAGGTCCAGCAGGCACTGTGTGGAACATCGCCAATGATATTCAGTTACTGTCGAACAATCATATATCCTTCAAAGGGTTCAGTTTGCCTCCGAAGAAAAATATCTCAGATGACCCTAGAGAAATCAGGCAGAAGGCATTGTCATACTACAACAGCACTTCCGTCACAAGTTACTCTGAGATCCGCCTGAACGTGTCACACATCCAGCTGTGGATCAGGGACAGCACAAGCCCCTCAGTATCAGCAGAAGTGAAGCACACTACACCAGCACCCAGTACTTCTACACTTCAGATGCAGCTGTTCTCATCCCCAGACTACAGGTTGCCTCTGGATCCCAGCAGCAAAGTTCAGAGTGACAAGAGAGTCTATGCAGAGATCTCAACTGAGAGTTATGGAGAGATTTCCTTAAGCATTAAGATCAGCAGCTGTAAGGTTCGCTCCATGCAAGTGGTGATGCAAATGCCGTTCAAAGAGGAGGGGGCCTGTTACATTAAGGACTGTCCTAAGAGACTCAGCTTCTCCTTTGAGATGCTTCAGGACCTGCCGTCCAGCTCGTGGGAACTCGAATGTGCAGTTCAACTTTGTCATGGTAAAATGttttgtacaAACGAAATGCACGTCAAGAGGAGCTTGCAGGTCAAGCCATATATTCCAAACGCAAATCGCTGTTTTGAGTTCGGGCTCTCAGCTGTTCTAGGAATCGCGTTCGGGGGATTTCTGATCGGAGTTCTCCTCACTGGTGCTTTATGGTTCATTAAGATACGAACAGCTTATGAGGGAAGAGGTGGAGAGAGCAGCTCTAACAAGCCTTGCGATGATTTCCCCCTAGAAATAAGATGAAGCAGTTAAGGCATCCTGTGGCTCTGGGAATGAGATCAACGGCAGCCGAGCTCTCAGTCCTCTCTATATCTGGATGCCCGTGTGGTTTGACCAAACGGCAGCCAGTGCCCACCCACTCGTCTCCCTCAGAGAACAGCAGCGCCAACGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59464 lncRNA downstream 291925 29323982 ~ 29325074 (-) True LOC122345120
TU59465 lncRNA downstream 291925 29324114 ~ 29325074 (-) False LOC122345120
TU59338 lncRNA downstream 1286523 28326897 ~ 28330476 (-) True G40083
TU59336 lncRNA downstream 1324062 28292726 ~ 28292937 (-) True G40081
TU59333 lncRNA downstream 1361792 28254921 ~ 28255207 (-) True G40079
TU59587 lncRNA upstream 30067 29685128 ~ 29685727 (-) True G40266
TU59589 lncRNA upstream 146133 29801194 ~ 29805802 (-) False G40268
TU59596 lncRNA upstream 146133 29801194 ~ 29805802 (-) True G40268
XR_006250938.1 lncRNA upstream 384393 30039454 ~ 30046148 (-) True LOC122344857
TU59775 lncRNA upstream 387579 30042640 ~ 30042867 (-) False LOC122344857
XM_043239776.1 mRNA downstream 281311 29325983 ~ 29335688 (-) True LOC122345545
XM_043238949.1 mRNA downstream 290884 29324104 ~ 29326115 (-) False LOC122345120
XM_043239775.1 mRNA downstream 293314 29303143 ~ 29323685 (-) True LOC122345544
XM_043239773.1 mRNA downstream 293316 29303143 ~ 29323683 (-) False LOC122345544
XM_043240766.1 mRNA downstream 346299 29174951 ~ 29270700 (-) True brinp1
XM_043238497.1 mRNA upstream 5957 29661018 ~ 29670185 (-) True ak1
XM_043238498.1 mRNA upstream 5957 29661018 ~ 29666833 (-) False ak1
XM_043238496.1 mRNA upstream 18172 29673233 ~ 29698626 (-) True gpsm1b
XM_043239186.1 mRNA upstream 183578 29838639 ~ 29846990 (-) True fam78ab
XM_043238807.1 mRNA upstream 204491 29859552 ~ 29880103 (-) True prrc2b
TU59455 other downstream 126795 29460585 ~ 29490204 (-) True G40182
TU59335 other downstream 1352295 28255828 ~ 28264704 (-) True G40080
TU59237 other downstream 1721545 27889123 ~ 27895454 (-) True LOC122344874
TU59072 other downstream 2218279 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 3505597 26111332 ~ 26111402 (-) True trnag-gcc_64
TU59650 other upstream 271324 29926385 ~ 29926833 (-) False LOC122344966
TU59790 other upstream 436888 30091949 ~ 30093513 (-) False rnf170
TU59791 other upstream 436888 30091949 ~ 30093513 (-) False rnf170
TU60232 other upstream 945840 30600901 ~ 30603493 (-) False fubp3
TU60233 other upstream 949783 30604844 ~ 30613141 (-) False fubp3

Expression Profile