RNA id: XR_006251003.1


Basic Information

Item Value
RNA id XR_006251003.1
length 1795
RNA type transcript
GC content 0.46
exon number 15
gene id tmprss13b
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14001934 ~ 14009536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aagaaatgaGTTACTACAGGGTGCTACTGCGCTGATGATGTAAGATTTGTACTGTGCCACTAGCAGGTGCACGACAGAAACGAAATACATATCTTAGGTACAGGTAGATTCTTCTTGATCTGTTTAAACAGATACTCATCTATGGAGCACAGACAGACCGAGTCTCCTCCCTCATATGACTATGTGATGAATCACAATACGCCTCCACCTTCATATCCGAGTCTTGAGACACTTTCAGCCACCCAAGTCCAGCCGTACTACATACCACAGCCAGTACACCAAACACCTGCTCCTTGTGCACAGACaaTCCCAGCACAGACCGTTAGAGCTTCCTCACAAAGGAACAAAAGGTATTGCTTTGGTGGGTCGAGTGTTACTGCTGTTATAGTTGTGCTGGTTGTAATTGCTGTCTGGATTGGAGTGCGCTATGGGCCGTCGCTATGGGCTCtcacagaaaaagaaacgcCACCAGACACGTGCCCCCCTTCATCAGTCGACTGTGATGGAAAGAAAGACTGTTCTCAAGGCAGCGATGAATGTCGCTGTGTGCGGTTTGGCGCAGCAAATGAATTGCAGGTCATGACCTCTAAGACCAAAAGCTTCCTCCCAGTCTGTGCACAGGGCTGGAATAAAGACATAGCAGACCAAACGTGCCAACAGCTTGGCTTTAGACAGAGTTATGAAGTTGGTTTCCTGAACACCAGTTCATTCACATTTCAGAGTTTGAACAGTCAATTTACAAGCACCATCCAGGCGAGTGTTAATACAAGTACATCCTGTCCTGGTCAGCAGACTGTGTCCCTGCAGTGCAGCAAGTGTGGAAAGCCACCAGGATCGAGGATCATAGGAGGAAATGCAGCTGCCGACGGTCAGTGGCCGTGGCAGGCCAGTCTGCATTTCCAAGGGTCTCACACATGTGGAGGTTCTCTGGTAGCTCCAGACTTCATCATTACTGCTGCTCACTGCTTCCCCAAAGGAACAACCGGCTCACAGTTGCCTAGTAACTGGAAAGTGTATATTGGTTTGGTGTCCCAGCTCCAGCTTCCCAACCCATATAATGTAAAGCAAATCATTTTACATCAGAATTATGATCCAGCCTCAAACAACAATGATATAGCCTTACTAAAACTCAGTAAACCTGCCAgtAATATAcagcctgtctgcctgcctgcgtTTGACCAGAAGTTTCCTGCTGGAAAAAAGTGCTGGACCACAGGTTTCGGAGTTATCAGACAAGGGGATGatAGTAGTTCCACTCTTTTGATGGAGGTTGAAGTAAACCTGATAGACTCATCTGTGTGTAACTCATACAGTGTTTACGGCGGACGTATCACTGAAAAGATGCAGTGTGCAGGAGATCTTAAGGGAGGGAAAGACTCCTGTCAGGGGGACAGTGGAGGTCCACTGGTATGTAAAGTTGATGACAAATGGTATCTCGCAGGCATAACAAGTTGGGGAAATGGCTGTGGAAAGCCCAACAATCCAGGAGTCTACACTGACGTAGGGCAACTTTTAATGTGGATATATGGCAAGATGCAGCAAGAGCGACCATGACCTTCTACAACAATGAAGAACAAATCTTTACATTCtattTGCTTTCCAACTTACGAATACACCCACATGAAACTAAGCTCTCACTGATTTGTCATTCACTCCACCATAAGAGAGTTTAAGGAGTTCCTGCAAACATTCAAACTCCTCTTTGACTTACAccctcacacacatacatcacaGTTCTGCAATTATCATCCCTGAAAGCTTTGAGATCCTGCAACACTGCTAACGATGGGAGTGG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53602 lncRNA downstream 24864 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA downstream 24864 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA downstream 24864 13975352 ~ 13977070 (-) False G36385
TU53531 lncRNA downstream 182600 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 288514 13712680 ~ 13713420 (-) True G36297
TU53878 lncRNA upstream 266560 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA upstream 270138 14279674 ~ 14282516 (-) True znhit1
TU53914 lncRNA upstream 301088 14310624 ~ 14310860 (-) True G36561
TU53915 lncRNA upstream 301426 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 302232 14311768 ~ 14320994 (-) True G36537
XM_043239548.1 mRNA downstream 1678 13987489 ~ 14000256 (-) True arhgap35b
XM_043239846.1 mRNA downstream 34107 13965155 ~ 13967827 (-) True LOC122345582
XM_043240379.1 mRNA downstream 61718 13938641 ~ 13940216 (-) True chrm1b
XM_043240423.1 mRNA downstream 153864 13845403 ~ 13848070 (-) True LOC122345901
XM_043238578.1 mRNA downstream 269451 13720781 ~ 13732483 (-) True wdr44
XM_043239654.1 mRNA upstream 4878 14014414 ~ 14024552 (-) True scn4bb
XM_043239655.1 mRNA upstream 18881 14028417 ~ 14032586 (-) True mpzl2b
XM_043238794.1 mRNA upstream 31446 14040982 ~ 14056705 (-) False rnf214
XM_043238795.1 mRNA upstream 31446 14040982 ~ 14047407 (-) False rnf214
XM_043238793.1 mRNA upstream 37414 14046950 ~ 14056705 (-) False rnf214
TU53547 other downstream 153875 13846378 ~ 13848059 (-) False LOC122345901
unassigned_transcript_957 other downstream 156975 13844887 ~ 13844959 (-) True trnam-cau_27
unassigned_transcript_956 other downstream 162972 13838890 ~ 13838962 (-) True trnam-cau_26
TU53529 other downstream 182992 13817742 ~ 13818942 (-) True G36336
TU53475 other downstream 283391 13717124 ~ 13718543 (-) True G36298
XR_006250968.1 other upstream 35941 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other upstream 35941 14045477 ~ 14056705 (-) True rnf214
TU53907 other upstream 282527 14292063 ~ 14302381 (-) True LOC122345141
XR_006251010.1 other upstream 1196415 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 1286482 15296018 ~ 15308440 (-) False zfr

Expression Profile