RNA id: XM_043239568.1


Basic Information

Item Value
RNA id XM_043239568.1
length 1836
RNA type mRNA
GC content 0.47
exon number 4
gene id asb12a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11861044 ~ 11864442 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGCGTCGGCGCGCGCGCGCACAGCGACCCCTCTGCTCGCCCACAGACTAGCTTCCGCTGTTTGCTGCTCGTCAGTGTTTGGCTTGTTATTAGCTCGcaGTTCTTTTCTATGCTCCAGCTGCGGCCAGTGGAAGAGGATGAAGCAGCCTCTGAGAGTCTGGTGCTGAACCGAGCTGTGGCTAAAAATGACCATTTCCTGCTGGCTGAGCTACTGTTACAAGAGCGCTACAGCAAGTGCATTAATCAGCAGAGCGGTTGGGGGATCCCAGGCACCCCGTTACGCATGGCTGCTTCCAAAGGTCACCTGAGGTGTCTGCAGTTGCTCCTGGCACATGGGGCAGATGTGGACCGGCTGGATGTTAAAGCCCAGACCCCTCTTTTCACCGCTGTGTGCGGGCGTTACTTGAGCTGCGTGATAGCTCTTCTCCGTGCCGGAGCTAATCCGAACGGAAGCCACCTGAACAACAGCTCGCCCGTGCTCACTGCTGCCCGAGAGGGTGACCCCGAGATCCTCCGTCAGCTGCTTCAGCATGGGGCCGAGGTCAACGCCAGGTCAAAGGTGACGCTGTGGGCCTCAGGGGTTGCTGTCTGCAGTGGGCCGCTTTACCTGTCAGCCATATATGGACACCTGGATTGCTTCAAAATGTTGCTGTTATATGGGGCAGATCCAAACTATAACAGCCCCGAAGAGAAGGTGAACGGCAGGGCCACGCAGCAGAAGACGGTCCTGGAACTGTGTTTGAGACACGGCTGTGGAGTCGAATACATTCAACTGCTCATTGACTTTGGGGCAAACGTCTACCTGCCGACCCTCATCATAGAGAAGAGCACCAAACAGAACGAAGCTGTTGAGCTGTTGCTGAAAGAAAGAGGGTGCCCGAAGTCTCTCTCATCTCAGTGTAGATTGGCCATTCGTAAACACCTGATACAGGTGAACAAGATTGAGTCTTTGGACTCTCTGGAGATTCCACCCAGGCTCATCGACTATCTCAAACACAAGCCACACAAGAGTGCACTGGTTTACTGACAAAACAGATTACACTCCACTGTGCCTTTACTAAAGGACAGACTCATCCACTCACACATGGACTGGACAGGTAGACCATCTAGAGGCGAGGAAACGGACAGAAGATCTGGACTAATGACATGAACTCAGTTGTATGCAATCTCACAGACAGACCGGTACACTGCTAACAGCCCTGGTTTACATACAAGAAGTGCGTTAAACTTGAACACCCACATAAATTAATTAGCTTTAATGTCTTTCAAATTAGGCTGTGTAATATTACCAGAAGTGTTGCTGTAAATGCTTTAGAACTATGCATTGTTATAAAGCCTGCTCTGCCTTTTCAAGATCATCTGGAGGTTTTCATTTCTCGTACTAAATTGAGCCAATAttgtcgttttgtttttttttgtttttttttacagatttttgttttgttttgttaatcaGTAACAGCTTGTTGaaagatgtaaaaatgttaatcttAATGATGTATAAAATCAATTGTGATGTACTTGTGGGTATGAATCACTCGTTTAGAGCAGATAGACTCATCCAACAGATGTTGTGTAACCTCCATTGTGCAGATAACATGTAATGGATATCATTTTTGTTCCTGTGAGGTTAAGGACTTCGTCGGTTCCAGACTAAGTCTTCAGAAGGATTTAAGGCAGAGGTGTTGAAGTGACTTGCCTGAGGATTACAAAGAATATCATTTTATGCTGAATTGGATATCCAGTATATAAGCAGATGTCATTCGGAAACACAATTGCTATGAATAACATCTGGCTTGTTAGTTTGTTCATAAAATTGAACAGCTGAACATCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10334 ASB12; ankyrin repeat and SOCS box protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52458 lncRNA upstream 85552 11773986 ~ 11775492 (+) True G35629
TU52435 lncRNA upstream 132443 11728276 ~ 11728601 (+) True G35606
TU52389 lncRNA upstream 153271 11707531 ~ 11707773 (+) True G35585
TU52388 lncRNA upstream 154046 11706659 ~ 11706998 (+) True G35584
TU52094 lncRNA upstream 208361 11650628 ~ 11652683 (+) False glra4b
XR_006251023.1 lncRNA downstream 78995 11943437 ~ 11986820 (+) True LOC122345698
XR_006251022.1 lncRNA downstream 115913 11980355 ~ 11986820 (+) False LOC122345698
TU52608 lncRNA downstream 308841 12173283 ~ 12182024 (+) True G35733
XR_006250985.1 lncRNA downstream 413688 12278130 ~ 12279983 (+) False LOC122345282
TU52639 lncRNA downstream 414793 12279235 ~ 12283749 (+) False LOC122345282
XM_043239567.1 mRNA upstream 72 11852291 ~ 11860972 (+) True mtmr8
XM_043238911.1 mRNA upstream 15775 11840476 ~ 11845269 (+) True zc4h2
XM_043238910.1 mRNA upstream 15775 11841464 ~ 11845269 (+) False zc4h2
XM_043238909.1 mRNA upstream 15775 11841530 ~ 11845269 (+) False zc4h2
XM_043238908.1 mRNA upstream 37433 11817352 ~ 11823611 (+) True las1l
XM_043240199.1 mRNA downstream 756 11865198 ~ 11871038 (+) False amer1
XM_043240202.1 mRNA downstream 909 11865351 ~ 11871038 (+) False amer1
XM_043240201.1 mRNA downstream 1053 11865495 ~ 11871038 (+) True amer1
XM_043238754.1 mRNA downstream 12523 11876965 ~ 11901271 (+) True arhgef9a
XM_043238755.1 mRNA downstream 12524 11876966 ~ 11901271 (+) False arhgef9a
XR_006251083.1 other upstream 798730 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 927881 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 1129992 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1742918 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 2061686 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 59786 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 384696 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 384696 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 649634 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 838929 12703371 ~ 12705241 (+) False iscu

Expression Profile