RNA id: XM_043239572.1


Basic Information

Item Value
RNA id XM_043239572.1
length 1728
RNA type mRNA
GC content 0.51
exon number 4
gene id si:dkey-1k23.3
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3619178 ~ 3622404 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTTTTCGCTATGGCGGATGCTATCGAGTCTCCATCCAGGCCTCAGTATTGTCATGATGTGTTCTGGAGTCCCCTGAGCTGCAGATGGCCCAGTGTAATCTTTAACCAGCATTACGGCCTGCCTCCGTTATTGGACCCTCAAGACCTCAGCTGGGTGGAAGGCGTCTTCAGAAGGCTGGGGACGTCGTCTTGGCCCGGGTACTTGCGCACACCCGCGTTCGCTCAGGCCCCGGGACGGCACATGTCTAAGCTGAGGCGGGAGATGAGCGGAGGGGTGTCGGAGGTGGTTGGTGAGATGTGCAAGTGGAAAATTAGCTTGGACGTCAATCACTTCGCTCCCTCTGAGATCAGTGTCAAGATACAGGATGGACTTTTAGTAGTTGGAGGAAAGCATGAGGAAAGGCAAGATGAGCATGGCTACATTACTagatgttttacaagaaaatacactcttCCGGGTGGCGTTGAGGCTGAAAGTCTCCAGTCGCGTCTGTCCGCCGATGGGATTCTTACAGTGGAAGCACCATTACCCAGCATTCCCCTCCCCTCTGATGTCGATATCCCCATTCAGGTGGAGGAAACCACTGGAGGAAAACAACAAGAGGAGCTTCAAACCGGCGTCGAAGCTGAGGCCAAACCAGGATCGTTTGAAGGGGAAACTGTCTCGACTGAGCCTCCCGAACCAGACCAGCAGACTGTATCTGAGGTAGATCCATCTACGGAGCCACAACCGCAGTCCATCTCAGAAGCTACCGCTGCGTCTGGAAGAGAGCGGGTCGGCGAACCCGGAGAAGAGGACAAAGAAGCTGCTTTTCAAGAGACAACTGAGGGCACCGAGCGAGACGAAGACAAGCCTCAGGCCCCAGAGACTCCAGACACCATCACCCCGGAGCAAGGAGAGCAGGCAGAGGTCACGCAGCCTCGAGAACTGGAGGGCGAAGAGGGATATACAGACCCTGCTGTGACAGAAGATGAGCAATCAACCTTCGGGCAAACCCAAGAGCCGTTCGTCCCTCAGCAGGTGCTCCAAAAGGAGATGGATGTAGGCAAAATGTAGGCTGCAAGATAGCAACACCCCAGCTCTTTCCTCAGCCTTCGAATTTACTGTAACATGCATCTTCTTAGCACTAATAAAGACCTGAGCATGATTGTGTGAAGCTTCTTGTTGTGCTTTACAACAACGCGACCGATTAATCAGAGAAAGCTGAGAAGTGATTCTAACTAAAAGTGACAGATGGAGATTGTGGGACCTAGCTGACTTCTCGCTTGCAGAGAATGTTATATGCTTGCACATTACATCCCTCGAGTAGTAAATATCATATAATTCTCTTCTAACTCGGATGGTTATGATTCCAGCACCTCTTTATATCGGTGATTCATTAACCTCAAACCCTGAAAATTACGCGTCGCGAGAGCGTGGATCGATTTGAGGAGAAAAATCCGATGGGCAAACACATCGGTTAATCAGTGGAGTACcgtttttttcaatattttctctCCGCGTCCTCGTCGAGGAGATTGAAAGCGAGCCAAAGCGTTCGGAATAATCTCCACACTAATCTGTCACCCAATTACCGCCACCGTGCAGAGACAACTCCCATGGAGTCGCTCCCATAAGCACACAGCCAATCTGCCAAGAGAACACCCAGATGTGATAGAGGACAGAGCACTGAGAAACCGAGGAAAGCGTGATGCTCGATTTATTACTCCACGGCATCAGGAGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48765 lncRNA downstream 124 3617937 ~ 3619054 (-) True G33114
TU48594 lncRNA downstream 228799 3388284 ~ 3390379 (-) True G33008
TU48579 lncRNA downstream 275938 3340599 ~ 3343240 (-) True G32998
TU48580 lncRNA downstream 291937 3293606 ~ 3327241 (-) True G32999
TU48486 lncRNA downstream 442929 3175719 ~ 3176249 (-) True G32922
TU48777 lncRNA upstream 26062 3648466 ~ 3652888 (-) True G33124
TU48785 lncRNA upstream 122271 3744675 ~ 3749016 (-) True coq5
TU48784 lncRNA upstream 125212 3747616 ~ 3749016 (-) False coq5
TU48808 lncRNA upstream 276187 3898591 ~ 3904546 (-) True G33140
XR_006250999.1 lncRNA upstream 345452 3967856 ~ 3968964 (-) True LOC122345413
XM_043238403.1 mRNA downstream 124985 3422884 ~ 3494193 (-) True taok3a
XM_043240533.1 mRNA downstream 201437 3403023 ~ 3417741 (-) False txnrd2.2
XM_043240531.1 mRNA downstream 201451 3399008 ~ 3417727 (-) True txnrd2.2
XM_043240530.1 mRNA downstream 201470 3390994 ~ 3417708 (-) False txnrd2.2
XM_043238174.1 mRNA downstream 242652 3343560 ~ 3376526 (-) False gnb1l
XM_043240173.1 mRNA upstream 37300 3659704 ~ 3662910 (-) True xbp1
XM_043239950.1 mRNA upstream 125469 3747873 ~ 3752764 (-) False coq5
XM_043240848.1 mRNA upstream 131575 3753979 ~ 3809696 (-) False kremen1
XM_043240847.1 mRNA upstream 131575 3753979 ~ 3809694 (-) True kremen1
XM_043238280.1 mRNA upstream 199714 3822118 ~ 3847170 (-) True susd2
TU48454 other downstream 606359 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 659001 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1013263 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 1033752 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 1065032 2496504 ~ 2554146 (-) True G32857
TU48805 other upstream 263021 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 263146 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 522523 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 522523 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 522523 4144927 ~ 4193081 (-) False LOC122346168

Expression Profile