RNA id: XM_043239575.1


Basic Information

Item Value
RNA id XM_043239575.1
length 1705
RNA type mRNA
GC content 0.46
exon number 4
gene id hspb8
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3610472 ~ 3619055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGAGGGTCCTCGGTCAGCTGTCGTGAGCCTCCGAGCACTTTCTGGACTTTGTAGACCGGTAAATCACATATAAACCAGTGGAACGAGTTTACATCGTCAGTAAACTTCTAGGAGCCTTACGTGCGCGCGGTATTACGCGTAAACTTGGTTTCACGATGGCAGAGGGGGATTACTACACTATGGGCAACCGGCAGAGGATTCCGAGGGATCCGTTTCGCGAACAGTCGCTCTCATCTCGATTCATGGACGATGACTTTGGACTGCCGCCTTTTCACGACGAGTTATCTATGGACTGGCCCGGCTGGGCGCGACCTCGACTGAGCGCCCGCCTTGACGCGCCGTGGACGGGCCCCTTGCGCTCGGGCTTCCCGCGGGGCTTCAGCGCCAGATACGGCGAGGGTCCGCGCAGAGCCAGCGCTCCTCCGTGCAACCCGGACGAGCCGTGGAAAGTGTGCGTGAACGTGCACAGCTTCAGACCCGACGAGCTTAATGTCAAAACTAAAGACGGTTTTGTAGAGGTGTCAGGGAAGCACGAGGAAAAGCAGGACGAGGGAGGAATCGTCACCAAAAACTTCACGAAGAAAATTCAAATCCCGTCCGACGTGGACCCTCTCACTGTGTTTGCCTCTCTGTCACCGGAAGGGGTCCTCATCATTGAAGCCCGGCAGACCCCTCCGTATTACCTCTACAGCAATGAAATGCCCGCAGAACCCATGGAAGAACCCGAGGCCAGACCTCAGGAACCCAGTATGGCTTCAGCCGAAGTCTTCGCAGCCAGGGAGTGAAAGCGAGTTTACATGCCCTTAGTATTTGTTCCAAGCCAGTGCCAAAGTTTCAGAAATTTACTTAATTCAAAAGTCATTAATCTGCTAGGGAGTAGTCCATAAATCAAACGTGTATATGGTACACGGTTGGATCAAATGCCAGTATCTTTCATTTACTACGTCAGTGAAGAAAAATGATGGAAATAAAGGGAAAGATACCGAAATCAGATGAAACCGCGGTCATGAACATACTCTACGCGAGTACAGAAATGCGAAAGCATTGTTAAACATTGCAATGGCAAATCTCAGTCCTCAAGGGGGCGATAAAGCTCCCTTCAAgcagtttaaagggatagtttacccaaaaataaactcATCATTTATTATCTCGTTCCAAACATTAACGTCTGTATTGCCTCTAtggaacacaaaatatttttgcccataaaagtgtcgATATAATCCAATGTTTGAGTTTGACTGTATGAACAAAATAGTAGCGAccttcaaacattttttaaatatcatctcgttgtacaggtttggaacagcgcAAGATTTAACTAACGTCTATCTCACCCTCCAGTTAAGTTCTCTTCAAACTGCTTCACATTAATCTGATCAAATAGAAGACAACACTGACAATGCAATGCATGCTTGTGTTGCAACGTGAATTGCTTTGAGACACAAAATGTTCTCATAGTTGAGTATGTTCGGACTCTCTGTCCCTCATATAAACCTAAACTTGTCTGGGTTAAATGGAAGTGCTGTTTTAATCATCCGAGTACTCGTCACGTTGGACTATTTATATGGCTGTAAATGCTGGAGCTCTTTCTCAAAGGCtgttcattgtttttcttttcttattcgtgtgcgtttttttctttttgtgtagGAATGTATGCTAtgcttttttataataaacgaCCAATCACGAAA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48571 lncRNA upstream 103762 3505648 ~ 3506710 (+) True G32992
TU48528 lncRNA upstream 220985 3388301 ~ 3389487 (+) True G32956
TU48527 lncRNA upstream 222744 3387494 ~ 3387728 (+) True G32955
TU48507 lncRNA upstream 267542 3340604 ~ 3342930 (+) False tbx1
TU48504 lncRNA upstream 271419 3338811 ~ 3339053 (+) False tbx1
XR_006251072.1 lncRNA downstream 32354 3651409 ~ 3652844 (+) True LOC122346010
TU48630 lncRNA downstream 40812 3659867 ~ 3662929 (+) True G33018
XR_006250998.1 lncRNA downstream 637123 4256178 ~ 4282937 (+) True LOC122345412
TU48695 lncRNA downstream 637306 4256361 ~ 4257171 (+) False LOC122345412
TU48700 lncRNA downstream 662752 4281807 ~ 4282733 (+) False LOC122345412
XM_043238405.1 mRNA upstream 105269 3497249 ~ 3505203 (+) False suds3
XM_043238404.1 mRNA upstream 105269 3497252 ~ 3505203 (+) True suds3
XM_043238407.1 mRNA upstream 188328 3417904 ~ 3422144 (+) True pebp1
XM_043239954.1 mRNA upstream 267402 3328800 ~ 3343070 (+) True tbx1
XM_043239955.1 mRNA upstream 267402 3328800 ~ 3343070 (+) False tbx1
XM_043239570.1 mRNA downstream 4087 3623142 ~ 3650695 (+) True LOC122345442
XM_043239571.1 mRNA downstream 4568 3623623 ~ 3650703 (+) False LOC122345442
XM_043239947.1 mRNA downstream 58533 3677588 ~ 3747908 (+) False znrf3
XM_043239949.1 mRNA downstream 92548 3711603 ~ 3747908 (+) False znrf3
XM_043239948.1 mRNA downstream 95051 3714106 ~ 3747908 (+) True znrf3
TU48185 other upstream 1342278 2265145 ~ 2268194 (+) True G32706
TU48087 other upstream 1592013 2010411 ~ 2018459 (+) False LOC122345711
TU48080 other upstream 1705184 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 1767459 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 1784358 1822654 ~ 1826114 (+) True G32611
TU48849 other downstream 1003452 4622507 ~ 4623060 (+) True G33174
TU49128 other downstream 1985278 5604333 ~ 5649885 (+) False G33355
TU49131 other downstream 1985278 5604333 ~ 5649885 (+) True G33355
XR_006250955.1 other downstream 2006212 5625267 ~ 5647425 (+) False myo1ha
XR_006251052.1 other downstream 2340780 5959835 ~ 5978584 (+) False tnpo1

Expression Profile