RNA id: XM_043239591.1


Basic Information

Item Value
RNA id XM_043239591.1
length 5719
RNA type mRNA
GC content 0.47
exon number 17
gene id rabl6a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32082560 ~ 32103786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGCGATGAGATTTCGCTTTCATTTGCTCGGCTGTGCCAGTGTTCTGCTGGACGGAGGCGCGCGGCgcggctgctgtgttttggtgGTCGACATTGTTGAGAAGAGCGCGTGCTCTTTCACTGGATTACGTCATAAAAGGCGCTAAAGCGCTGCTGTTTCATCATCCTGCCGCTAGAGGCGTCGAGCTCCACAGCGCCGCTATTCATCATCCTACCGCTAGGGGCGCTGCAGCACAGGCGTCGCGCGCTCCTCTCGCCGTCCTCACGGCATTCCACAGCTGATGGACTCCGAGGGATGAGAGAGGGATGCTAAGGAAATGTTTTCCTTCAGCGCGGAAAACGGGCTGCCGTTCACCCCAGCAGACAGCAGAATGTGACTGAAATCCCGCGGGGGAAGACCGTCGAGCAGgtGATGCCAGTAGAGCGGTATGGACAGATATCAGTGGTTACAGTGGCTGAAATGGTACATCTTAGGATTTTAAGCCGCTGAAATTGAAAGTAAACATCTGCTAACTGCATCAATATATATTGAAGAAGGACTCCACTTTTGACCTTTAGACCACGTCACGCCTGCCATCAATATGTCGGGTTAAGAAAGTCTGAAGTCTTCGATCTCTGACACCGCAGTGAGTGTTTCCCCAGAAGAACAGGCTTTAGTTTTGCCGGACCGCTGAAGAGGCTTTCGTCAAAATGTTTACCGCTCTGAAGAAGCTGGTGGGCTCTGAAGCCGGGCAGCTCAGGGATAGAAATATTCCCGCAGGCCTGCAGTCCATGAACCAGAGTCTACAGAGGCGTTTCGCCAAGGGCGTACAATACAACATGAAAATAGTCATCCGTGGGGACAGAAACACAGGTAAAAGTGCACTTTGGCACCGGCTTCAAGGGAAAAAGTTTCTGGAAGAGTACATCCCCACGCAGGAGATCCAGGTCACCAGCATTCACTGGAACTACAAAACAACAGATGATGTAGTGAAAGTTGAAGTCTGGGATGTGGTAGATAAAGGGAAAGGGAAAAGACGAGGAGAGAATCTGAAATTGGAAAATGAACCTCAGGAGTCGGAGACAGAGATGGCTCTGGACGCAGAGTTCCTGGATGTTTATAAGAACTGTAACGGCGTGATCATGATGTTCGACATCACCAAACAGTGGACGTTCAACTACATCCTTAGGGAGTTGCCAAAAGTCCCCACACACATCccagtgtgtgttttaggtaACCAGCGGGACATGGGCGAGCACAGGGTCATCTTACCCGACGACATCAGAGACTTCATCAACAGTCTGAACAGacCGCCGGGCTCCTCCTACATACACTATGCAGAGTCCTCCATGAAAAACGGCTTTGGTCTCAAATACCTCCATCGCTTCTTCAACATCCCTTTCCTGCAGCTGCAGaGGGAGACTCTGTTACGGCAACTGGAGACCAATCAGCTTGACATCGATGCCACGTTAGAAGAGCTCAGTGTTCAGCAGGAGACCGAGGATCAGAACTATGACATATTTCTTGAGATGATGGAGGCACGCAAAGCTTACGGCTCTCCGGCGCCCTCTAATGGCCAGAGCCCGTCCTCAGGCTCCCAGTCTCCTGTGGTGCTGCCGGGGGCCGCCTCTCCCAGTAACTCCAGCCCCAGCACCCCACAGGCCCCCGTCCCGCTCCAGACACAGTCCGCCCCTCCGCAGCCGCCATCTATACCCCACCCTCCCGCCCAGACCGCAGCCGCCCAAGTACCCCAGACACCATCACAAACCCTGGAGCCTTCGCCCGTGGCTCCGGTAGCAGCTCCTCCTCCTGCCCAGAAACGAGGCTTTATCTCACGACTGTTCGGATCGTCCGCTGCAGAGACGTCAGCAGACAGACCAGAATCTACAGGCTCTGAAGACCCCAAGCCCTCTGGAAAGGTGCAGAGTGTAGATGACTTTGTGCCGGAGATGGGCCTGGACCGGACCTTTCTGGAGGAAGGTGGAGCAGCAATTAAATCAAAGAACAAACCTCGAACATCAGCTCCCATCCTGGACAGTGATAGTGATGGAGAAGGTCGGGGAAATCCTCTGGTCTCCGGTTTCCAGGATGATTTAGATCCTGATGACAGAGCGCTGTCTCATTCTGCCGTTAAAGCGGCGGTCGCGAGCGTGGGCGTCACCCTCACGAGTGACGAAGAGGAGGAAGATTCATCTCTGCCCTCTGCTGCCCAGCACAAAGGCATCGGCTCGGGCCCAAACTCAAAGGGAGCTACAGTGAATTCCGTCAAACAGCTGCAAACCAAGTCTAAAGCAGCTGAGAGACCCCAAAGCCTGAAAACCCCAGCAGGACCTGCGGTGCAAGGTCTGAAGACGGGGGGCGCTGTGGAGGCTGACTCCGAGTCAGACCAGGAGGCTCCCGTCGCTCAGCAGATGCTTTCGTTCGTCTTGGATGACCCTGATTTTGAGAACGAAGAGTTTGAAGCACCCAAGATCAAGAAGGGCACTTTTTCTGCACGAGATGACTTATCGGACCGGTCAGATGATGGGTTTGTATTAGCTGGTCTTCCAGAGCCCCCCAAACCTGCTGCCACCTCATTTAGGACCCTCAACAGTGACATTGACCTGTTCGGCCTGGGATTTGAAGAGACAACACCTAAGAGTAAAGACAGCAGTGAAGACCAGGAAGATAATGAAAGCAGACACTCGGCAAAGgacaagaaaaagaagaaaaagaaaagcaaagagGAGGACGAGAAAAGCAGCAAGAAACGACACAAGCACAAGAAGAAGGAAAAAGATGAGGCGGGAACAGGAGacgagaaagaaaagaagaagaagaaatctTCACGGACCAAGAAAGCAGGAACTGTGGACGATCTCGAGGCCTTCCTGGCAGGTGGAGACGGACCAGGAAACAGCGAGGGCGGAGACTATGAGGAACTCTAACCAATCAGGGTTTGACATCCGTGTGACATCGCCAGGTCATTTTCCAATCCATTCCACCTGTTTTTCAGTGCCTAACCTTTCGAATTCTCACAGCGTTTTTGTTCTTCCAGCATTGCAGCTTTATAAATTGGTACATGACACCGTTTTTCACCTCATGCCGTTTTCCAGTATTTTCAGACACGTAACTTTTAGATGCGTTTTTCAAACGAACCAGAGTTTATTCCGTTAGTAACTGATCACAAGTCGTTCCACAAAGACTTGAGGAAATTTTATCTTCATTGGTTTTGTTTCGCGTGTGTCTTTGTTACCGTGTGTCCCCGAACATTTTGGCAACTCCCCGTGtgcttgcttttttatttattctttaaacacGCAGACGTACGTTCAGATCCACGTGACGCACGTAACCCACGAGCCGAGCTGATTTCTGTGTCAAACATTCGAGAGaacttttcacatttaattaaacatttccgCTTGAGTTTACAAACCATTCTCGTGATAGTTGTCTATTGCAATTCTATCCAACAACGTAAGAGTGGCTTTCATAACAGTTTCCACAGAAATTCATTCCTCTTGTGTTTCGCGAACGATATCATGCATCAAACCTAAGAAAAATAATCAGTCGTAACTAGATTTAATACCATAAGCCTCTTTCGCCGTCGGTTTCTTTCCGTTAATGCCTTAAATTGTTTTACACTTAACGAAATGAAAGCATTTACGGAGCAATCCTATAAAGTCAATTAATGACCGAGGCTCTTGACAGACTGCTAAGGTTGACAGAATTACTTTTGAGCTGGTGAGGCACACTTTTGCAGCAATCGCAATTACGCTTGCAATTAGATTTATAATTATGCTAACGTTAGTCAGATTGGCGACTATTTATGCAGCTCTTAAACCagtgttattatttatgatCTTAAAATAGTTTCTGGCTCCTCTCATGGTTCGTTCGTTACGTCCTGTCTGGTAAATGCGTTCATTTCCTTTGCcgtatctttatttttgttaaggCATGCGTACGTGTTAGTAGTTGTGTTCAGATCTCGTGTTTTAGATAGTCGGGTCCGTACACTCCAGATAATCTCAGAGATGAACGTCGTCTCCGATGCTGTGATTTTGAGGCACCTTGAAGGTCCTTCATGTATAGCCGACATATTCAGAGCCTGACCGTGTATAGAAATGAGAAAACTTCATACATTTTAGCAACAACCCGAATCGGTGAATGCAGCTGAACGGAgctgatctaaaaaaaaaaattaggcaAATATTTTCCCTCGTGGTTATGCTTGGTTTGGTGGCCTAAAAAAAAGGAAGTCGCGGTTTAGTAAAGataagaaataaacacatttttaaaaaaaaaagtaaaatgatattttcaaCGCACACATTTATACTTTGTAATAtcagcaaaaaatgtaataatattttggcTTGATGTGATCCattgatattttgatgaatggaaATGATTTAGACGACTGATTGTTCACTCGTCTTTCATGACGGGCATCATTCATGATTCTTGTTTTCTGTGATGGTTGcatcagaatgaaaatgaaatgaccGTTTACTGtactcaaatgattcattctcATCGTGTTTCGTGAACGCATCCAACGCACCAAATGATTCAGTGAccgttatttttagttttaccaatgattatttgtatttaatgaacGAATATAGTGTTTACTTGCAATGCCCCCTTTATGCTTTTTCATTAGCATTTATCGCATAATGATAAATCAGTTGTCGCATCGAATGGATTTACCAATGATTCACTTGTGTGTCATAAATGAATCCCATTGTTTACACGCAATGAACTGCGGTGTCGAGGAATCTGATTGGCTCCAGCTTAAGTGGAAGAATGACATCATCCATAGTCTTGTGCACTTCAAACCTCATTTCACATGGATTTTCTATTTTtcagttgttattattattgggaGAAAATGACAATGTGCTCTCCACCTACCATAAGAAGGACTTGTTTTGGGTTTGAACATTCTCCTTAAACTTTGAACTTGAAACCTTTGAACTTCGGTTTGTTTTCGGGTCCGAGATATCCACCCATCCTTTTGTAGAGAGTCCCGCTCCGGCTTTCCTCCAGGATACGCCGTCAACCTGTTGACTACTGAATGTTGATACCTGCTCGTGAAGGAATTCGAGGACCTCGCCGTGGGTGACTAAGCGGTAACTAACGGTACGTTTAAAGAAGTGCAGATTCCCGCGTGTCTCCTGCGTCTCCGAGGTGGCCGCGGATGGATCCGAGAGCGTGATGCATCACGCTGTCACCATGGAAGCACACGCCTGGGAAAACCGCCTCTACACACTCACTGTGATAAATAGTCACGCTCTCAACTGTTAATACTCTCACCCCAAACCAGCAGAAGCGCGCTCCTCGAACACACATCAGCTCCctcgatttatttatttgtctgttcgTTTGGCACGGATATTTTCCCCAACGTTCGAGAGAAGGAGACGAAATGAATGCATCGGTGCTGCACTCGCTCTCTCTGGCTGATGGACTGCATGCAATTACCAACATACTGTACTTCCTGCACAGCGTCTCACGATGAGTTATTTCATGGAGCATAAATGTTTGGGAACGCTATTTTTAAGCCGTATATCGGTTTTATTTTATCCATACAGCATATATGCATTCCAAAGCCTTTGTTTGGGACCATAAATGATTGTGTTTAcctatttattgtttttgttaccCTGTTTCACTACCCTTAGtatattatcaatatttgaTTTACGTGTTTCaattgtgtaataaatgcaaGAGAAATTTGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60812 lncRNA downstream 104094 31977714 ~ 31978466 (-) True G41065
TU60811 lncRNA downstream 105509 31975936 ~ 31977051 (-) True G41064
TU60785 lncRNA downstream 177773 31723742 ~ 31904787 (-) True G41047
TU60963 lncRNA upstream 282341 32386127 ~ 32386472 (-) True G41177
TU60989 lncRNA upstream 334833 32438619 ~ 32439145 (-) True G41198
TU60982 lncRNA upstream 340496 32444282 ~ 32445281 (-) True G41191
TU61018 lncRNA upstream 373476 32477262 ~ 32477840 (-) True G41216
TU61019 lncRNA upstream 376569 32480355 ~ 32480713 (-) True G41217
XM_043238182.1 mRNA downstream 15346 32049652 ~ 32067214 (-) False ajm1
XM_043238183.1 mRNA downstream 15346 32049652 ~ 32067214 (-) True ajm1
XM_043238184.1 mRNA downstream 19488 32049652 ~ 32063072 (-) False ajm1
XM_043238302.1 mRNA downstream 66092 31979887 ~ 32016468 (-) True pbx3a
XM_043238304.1 mRNA downstream 66095 31979887 ~ 32016465 (-) False pbx3a
XM_043239627.1 mRNA upstream 10110 32113896 ~ 32174064 (-) True tnca
XM_043239628.1 mRNA upstream 10110 32113896 ~ 32173416 (-) False tnca
XM_043239629.1 mRNA upstream 10110 32113896 ~ 32173391 (-) False tnca
XM_043240763.1 mRNA upstream 110245 32214031 ~ 32293776 (-) False LOC122346090
XM_043240762.1 mRNA upstream 110245 32214031 ~ 32293775 (-) False LOC122346090
TU60769 other downstream 359654 31721270 ~ 31722906 (-) True G41035
XR_006251005.1 other downstream 370823 31702453 ~ 31711737 (-) True apooa
TU60335 other downstream 1256202 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 1256202 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 1289841 30789633 ~ 30792719 (-) True G40713
XR_006251008.1 other upstream 18498 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 110490 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 110506 32214292 ~ 32293782 (-) False LOC122346090
XR_006251087.1 other upstream 110507 32214293 ~ 32293782 (-) True LOC122346090
XR_006251089.1 other upstream 110509 32214295 ~ 32293782 (-) False LOC122346090

Expression Profile