RNA id: XM_043239594.1


Basic Information

Item Value
RNA id XM_043239594.1
length 3101
RNA type mRNA
GC content 0.46
exon number 15
gene id arhgap25
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12381364 ~ 12394042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aacacaccaTGGTTAGTTTTACATTCACAAATACGAAGAAACCATGGCGCGTGTCTTCAAGAAAATGACCATTTCTGAGAAGGAGTTGTCCCTATTGGTTAATGTGCATCCTGCACCATTGTAGACTGCATTTTTGCCTGTGTAGAAATTCATCAcctctgttatttttttctgtgtcttGACTTTGCCACTCACTTCCTCAGCTCATGAAGATTGCGGGTACGAGGAGTCACGGTGCTGCTCTGCTGCCTATGACAAACATGCTGGATGTAGAAACTTCATAGTAACTTTTGGTTTgctcacacaaacactgcagGCGAGCCGAAGGGCAAGATCGAACGTGTTtggaagtgtaaaaaaaaagaagaagaatcaGATCAGCAGAGGAAGGAGGAAGTAAAGAGAAGAAGAGGGGCTGACTGGAAAGAATGTACACTTAGAGTtgactgtgtgttttgtgattgtttttgtgtgtgcgtgtgagcgagagagagaatgtgtggtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaccttTTGGTCCGATTTTGAAGAAATGTCTCTGAGACTACCTCATAACTGGGACTTCAGCACTTTCAGAGCTGAAACAGCTAAGATAGCTCGCTCCAAGAGTGTTATGCCAGGGAAGAGCCCTGGATCCACTCACACCGGTTTTAAGAGATCCATGGAGAAACCTCTGAAAACAGGCTGGCTGAAGAAGCAGAGATCCATCGTAAAGAACTGGCAGCTGCGCTTCTTTGTGCTGAGAGGCAACGTCTTAACATACCACAAAGATGACAGAGAAAATGCTGTCCAAGGAACCATCCCTTTATTCTCATGCCAAGTTAACGAGCTGCCATCTAATGCGGATGATAAATTTCTGTTTGAGATTATCCCAGGTAGCAGTACAGACCGGGAGCGGGAAGCCTATGTTCTCATGGCAACCAGTCAGAGCGAGATGGAAGAGTGGGTGCGCTCCATTCGCAAAGCCATCGGATCACGGTCCAATGGAGTATTTGGAAAGAGCCTTTCGGATATGATGGTGTATGAGAAGAAATTTGGACCACGTCTGGTGCCCATCCTGGTGGAGAAGTGTGCTGAATTCATCAGAGAGCACGGTCTGAGTGAGGAGGGCATCTTTCGCCTGCCAGGACAGGACAACCAGGTCAAACAGTTCAGAGAGGCCTTTGATGCCGGAGAGAGGCCGTCATTCCCCAGTGACACCGATGTCCACACGGTGGGGTCCTTACTTAAGCTGTACCTCAGAGAGCTTCCTGAACCTGTTGTGCCTTGGACGCAGTATCAGGCCTTCCTTGACAGCACTCTGACGCTGGATGCCGCCACTGCAGCGGGCAAAGAAAAGCTGGAGGTACAAATCAGCCATCTGCCGAAAGTGAACTACAACCTCCTGAGTTACATCTGCAGGTTCCTTTTTGAGGTCCAACAAAACTCAAAGGTGAATAAAATGAGCGTTGAGAATCTGGCCACGGTGATGGGAGTGAACCTGTTCAAGCCACAAGTGGAGGACGCCATCAGTATGATGAAGGGAACACCCATGATACAGAAGGTAATGACTGTGATGATCAGACACCATGAGCTGCTTTTCCCACCCTCTAAAGACGCGCAGCCATCTCCTCTACCGAGcaagaaaagcaaaagcaagAAGAGCAGTAATCCTCGCAGTTTTGTGGGCTGGGAGTCTGCAGAGTGTGAAGTGTCCTCCCTTTCTGAGTCTCCGGAGGAAGAGGAAATGGACACACCTGAGGAAGAGAGGAAGGACCTGTGTTCATCTGACACAGGATCAGAAGGCACGCCTCTTTCTCCTTCCTCGCCATTTTCATCCGCAACCGACACATGGCCCGACAGCCCCAGAAAAAGAACACAAACTCTACCCAGCTTAGGCTGTCTGCCAGCGGGAAAAGGCCGTGAGCCTTCTTGGGAACGCTGGAGCAGGTTCCAGGAGAGCTTTAAcgagaatgaagaaaaaacattctcaGAGGACATCTTTAAATTACTCGACCTGCAGAAAGTGACACTATTTTCTGGAGGGCAGAAAAGTGAAAAGGAAAATGTTGAAGGACAGAAGGACACAGACTTGAATAAGACAGGTAGTGATGTCGTGGACAAACAGATAGATGCTGTAAAAACACAGGCACAGAGCACAACCCTTCCCAAACCTCGGGTAAGGAACGATGTGACTGCACCAGCTGTGAGCCAAGAGAAGCCAGCGGAACCTTCAACAGAACCTGCTCTAAAGAAAAGCAATGCAGCACCACTAGAAAACACAGACTCAACAAACATCATCAACAGTCTCCAGCAGAAGAACAAAGAGCTGAGCGCTACAGTGACGGAGCTGCAGGCAGCACTAGAGGCAGAGAAACGCTGCAAAGCTGCATTAGAGATCCTACTACGCAATGCAGAGCGCAGCAGGGATGAAGCACTTGTGCGCAATGAGCAGCTGAACCGAGAGATTCAAGAGTTCCTCAACAGACCGACTGCTGGACCGTCATAGTCACGCCATCACGCgaacatatttcaaatgaagTCCTGTGTAGCCCCTCAGGAGTACACCACAAGCTGGACAACTCCATCTGGTTTTACACCATGAACTGTTCAGCAGAATGCCTTCAGAGTAAGACTATTGATAATGTCCATCTCCCAGGACTTCGATACAGTATATGACACCTTATGTAAAGAAATGACAGATTTGATTTACTTAGACGTAAGACAAGATGTGAATTTTGAAGCAATGCAGTATTTTACTAAACAGTTGAGAGTATTTAATGACCTTTTTATTGAAACGTTATCGTATTTTATAATGAATCTCAAAGAAATAACTCcccaacaaaaactaaaatggtcagatttgtttttaaagagcctTTTTATCGACAAGGAGAAGTCTTTTCCTccgttaattattaattataaattaaaacaaaatctgttGTGGCAAAGGTTTAACATAGTTATTGTTTATGTTCTCACCGGACTGTGTTAGTCTCCATTAGAGTTTGTGAACAATTTGATGAAAAGggcaaaaagcacaaaatgtgGATTACTGTCAGTAAATAAACCGTTTTTATCTGG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K20642 ARHGAP22_24_25; Rho GTPase-activating protein 22/24/25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52729 lncRNA downstream 124552 12255480 ~ 12256812 (-) True G35812
TU52722 lncRNA downstream 132656 12226918 ~ 12248708 (-) True G35805
TU52721 lncRNA downstream 133855 12228582 ~ 12247509 (-) True G35804
TU52704 lncRNA downstream 198385 12181487 ~ 12182979 (-) True G35797
XR_006250983.1 lncRNA downstream 201614 12179051 ~ 12179750 (-) True LOC122345280
TU52930 lncRNA upstream 49745 12443787 ~ 12445220 (-) True G35922
TU52931 lncRNA upstream 54172 12448214 ~ 12450765 (-) True G35923
TU52943 lncRNA upstream 69864 12463906 ~ 12509996 (-) True G35928
TU52941 lncRNA upstream 112719 12506761 ~ 12515550 (-) False G35928
TU52974 lncRNA upstream 138348 12532390 ~ 12537802 (-) True G35949
XM_043239263.1 mRNA downstream 17649 12356836 ~ 12363715 (-) True LOC122345273
XM_043238180.1 mRNA downstream 107726 12272217 ~ 12273638 (-) True LOC122344659
XM_043239265.1 mRNA downstream 184987 12190702 ~ 12196377 (-) True LOC122345275
XM_043238170.1 mRNA downstream 204149 12173037 ~ 12177215 (-) True LOC122344646
XM_043239264.1 mRNA downstream 208362 12169594 ~ 12173002 (-) True LOC122345274
XM_043239593.1 mRNA upstream 2240 12396282 ~ 12409668 (-) True cds2
XM_043238310.1 mRNA upstream 18299 12412341 ~ 12428382 (-) True hs3st1l2
XM_043240361.1 mRNA upstream 116524 12510566 ~ 12513965 (-) True si:dkey-174n20.1
XM_043238504.1 mRNA upstream 146242 12540284 ~ 12560679 (-) True limk2
XM_043239479.1 mRNA upstream 246335 12640377 ~ 12642522 (-) True LOC122345379
TU52745 other downstream 61679 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 212037 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 565554 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 728737 11583780 ~ 11652627 (-) True G35554
TU52322 other downstream 914242 11463831 ~ 11467122 (-) True hmgn7
TU52956 other upstream 107872 12501914 ~ 12505958 (-) True G35936
TU53125 other upstream 659802 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 981587 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 1185019 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 1265035 13659077 ~ 13699226 (-) False lrch2

Expression Profile