RNA id: XM_043239626.1


Basic Information

Item Value
RNA id XM_043239626.1
length 3816
RNA type mRNA
GC content 0.56
exon number 17
gene id LOC122345463
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3022849 ~ 3089522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGATCCGCCTCATCGCTTCAGCGATACCCATCAGGAGGCAGTATATCTCCGGCGCAGTGTGTGTGGCGAGCCGGAGCTGCGCGGAGCACCTTTGTCTCTCTCAGAGCTTCACTTTAACAGGGCGCGGGGTTCAAGTTGCCGAGACGGAGGGGAACCGCTTTGAAGAAGTGGATCTTGACGGGTTTAATGCGCCCTCCCTCTCTAGAACTACTACAAAGGGAGTGAACGGAGAGAGTTCCGCTGCGTAAACCGACACCGACCATCGCGCCGCTCGCTCGCTCGCCCGCCCGCGCTCCTAGGCGTCAAGAAAGAGAGCATGCGGGAAAACGCAAGGAGCTGAGTCTTTCTTTGGAAAATGTGGGATTTGTTGGCCTCGTTTTGAGATGGTGCTCTTGTAAGACCGAGCGCCGTGAGCGTTTGCGTGCGTTTTTGGACGCGCCGACCGCCGTGAGCGTTACGCGCCGACTCGCCGGAGGAGCCGTTGTGTGCGTCTGGAGCCTCGTCGTCCAATCAGAGCCCTTGCTTCTCGTCCAATCACAATCTGCGTTATAAAAGAAATGGGGTGCGCCAAAGTTCTTCTGGTGATGTTTGTGATCGGCTTTGAAAAGGGGATTTGCGTCAACTGGAACCCCGTCCCTCGCAAGACGGTCAAATATAATGACGTGCACGACAGCATGGCGCGGTTTCGCGCGGTCGGGGTGTGGAACTACACCATGTTGACCCTGGCCGAGCACGAGAGGGTTTTGTACGTCGGAGCCAGAGAGCACATCTTCGCCCTGGATCCCAACGACATCAGCAGACAGCTCCGACCACAGattGAGTGGTCTGCTCCGgcggaaaagaaaagagagtgCGCAGCGAAGGGGAAGAATAACCAGACCGAGTGCTTCAACTACATCCGCTTCCTGCAGAGCTACAACCACACGCACCTGTACACATGCGGCACATACGCCTTCCAGCCCAAATGCACCTACATCAATGCAGATCATTTCGCCCTGGATAGCGCCGCCCTGGAGGACGAAGGAAAGTGCCCTTACGACCCCGCCAAGGGTCACACAGGACTGATCGTGGACAAAGAGTTGTACTCCGCCACCCTCAATAACTTTCTGGGCACCGAGCCTGTAATCCTGAGGAACCTGGGACAGCAGCATTACAGCATGAAGAGTGAATATCTGCCGGCGTGGCTCAACGAGCCAAACTTCGTGGGTTCGGCGCTGGTCCGGGAGAGCCGCAACAGTAAAGATGGAGACGACGATAAGATCTACTTCTTCTTCAGCGAGAGGGCGGTGGAGCTGGACTGTGACAGCGATCTGACCGTGGCGAGGGTGGCACGTGTGTGTAAGGGAGACTTGGGCGGCACACGGACCCTGCAGAAGAAGTGGACCACCTTCCAGAAAGCTAGGCTGATGTGTTCTTTCCCCGAGCGCCACATCACCTTCAATAACCTGCGAGCTGTCTTCACCTTGCCCGGGGCTGACTGGAGGAGCACCAGCTTCTACGGCATCTTCCACGCGCAGTGggggGACGTGGACGTGTCTGCGGTGTGTCAGTACCAGATCGGAGAGGTGAAAAACGTGTTCGACGGGCCGTATAAGGAGTACAGGGAGTCGTCTCAGCGCTGGGGCCGATTCACTGGCACCGTTCCCAGCCCTCGACCCGGAGCGTGCATCACGAACTTTGACCGAGAGAACGGCTACAACAGTTCTCTGCAGCTGCCCGACGCCACGCTGAACTTTGCCAAGAAGCATCCGCTGATGGAGGACCGGGCCGAAGCTCGCCCCCTGCTGCTCACGAAAGGCATCAACTTCACCCGACTAGCAGTGGACAGAGTGAGCTCGCTGGACCAGAGACCCTACAACATGCTCTTCATAGGCACAGCGGATGGATGGCTCCAGCGTGTGGTGATTCTGGGTTCAGAAGCTCATGTGATAGAAGAGATCCAGCTGTTTGATCGGCAGCAGCCGGTGGACAGCCTCACCATCTCACACGGCAAAAAGTATTTGTACATTGGCTCGCGCTCCGAGGTTCTTCAGCTGCCCTTGGCAAACTGCAGCCGCTACCATTCACAGCCAGACTGCCTTCTGTCCCGAGATCCATACTGCGCCTGGGACAGCGAGGACCGCTTGTGTCCGTGCATCGACCTCCACCGCGGCTCCACATCCACGCTCTCACAGGACCTCATGCTGGAGAGGTTCAGCCGAGGAAAAGCCAAGTTTGATAAGCCTTTCTCCATCCCCAGTCCAGatcATTCTAGGTTGCGAAATGTGACTGTGGTTGTTGGGTCAGATCTGGTTTTGCCCTGCCATCTGGTTTCCAACTTGGCCCAGCCTTTCTGGGAGCTCAACGAACGTGAGCTGGCCCTGGTGGAAGGCGAGGGCCCGGGGCCCCGATTCGACCGAGCCCTCCGCGCCCTCGTCATCCCCCAGGCCGGGCCCCTTCAGGCGGGCCGCTACATCTGCTTCTCGGAGGAGCAAGGCGTGAAGTTCCAGACGGAGAGGTACCAGGTGGCGGTGGTGGCCAGCGCACCCGTCTTCATGGAGGCCCGGGCCCCGGACGGAAGCATGGGCTTGTTCTGGGTCCTGGTGATCACTTTGGGAGCCGCTTGTCTGCTGCTGCTCATCGCATCTTTGTATCTGCGCCGGAGACTGAAGTTGGCGCTGGGTAAAGGGGCGGAAATGAAGCCGCTGGAGAGCACTTTGGTCTACCCCATCACTTTACCCAAAGAGCCTCCGAGTCGCCCGTCCTTCGTCCCGAGCAAGATGGCGAACGACGAAGACCGCTTCTGGGAAACGGGGGCCAATTATTACTACTCGGACGGCTCGCTAAAAATCGTGCCTGGGCATGCGCTGTGCTCCACAGGGAGCTCGGCGTCCCCGAGCGCCATTCCCGGTCAGCCCATTCACTCTCCGAGCAGACTGAGCCTCACCAACATCCGGAGCTCGAGCGCCAACGGATACATCCGGCTCAACCTGAGCACGGCCGGAGAGGAGCGCTCCAGCATCCAGGGCATCGGCATGGCCGGCCGAGACAGCGACTACTCCAGCCCGTTCAAAGAGGAGCTCCGGAAAACTCTGCAGCAGAGGAGCGTGCTTCCCGACGCCAATCCCGAGGAGTCTTCGGTGTAAACCTCGTGACGCGGGAAAACCTCAGCTACCTCCCTCCTGCTCGGGGAACTCTCTTCATCCGCAAACTCTTTCTTCTCAGTCAGCACTTCCATCTCACGACATTCCCTTGGATTATTCTACTAACATTCGACGAGCTTTTGTACATGTCTGTTTTGGAAGGACCGGAGCGACCGAGCCTCGGCTAAAAGCAGGTACATCTCTGAGAGGAACCCAACCAGCCGAATGTAGCCGTGGGTCTGAACTGCGACTGATAACAGACCCCTATCGTTTGGCGAGAGGATGCGGAGTTTATTTTTGACGACACGTTTGAGACGCATCAACTCCAATCGCTCGATGACAATCACGCTCGGGAGTGAGCCGTTAAACCGAAGCAGGACTCGAACGACGAACTAAGCGCTTTGCCTTTCTTTCTTCGCGGCTCgacgattttttaaaaagtcttttttctGAGAATGTGTACTGAGACTTGCAGCACTAATATATTGTGAGGTTTTTTCCATGTCTGTTTATTGCAAggatttcttcttctttttttttacgattGCGATTTACGATAGCTTCATCTGAAATGTGAAAGGATGAGCAGTGCTAGTAGCATGCAGCAGAATGTTGTACTAAGACTGCGTTGGATGTGACAGCAAGtgcattactgtatatatttggcTGGAGCTGCCAAATGAAGTACAAGCC

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48473 lncRNA downstream 37866 2982767 ~ 2984983 (-) True G32910
XR_006251081.1 lncRNA downstream 72517 2948484 ~ 2950332 (-) True LOC122346059
TU48461 lncRNA downstream 85911 2936481 ~ 2936938 (-) True G32906
TU48425 lncRNA downstream 248659 2767779 ~ 2774190 (-) True G32883
TU48486 lncRNA upstream 86197 3175719 ~ 3176249 (-) True G32922
TU48580 lncRNA upstream 204084 3293606 ~ 3327241 (-) True G32999
TU48579 lncRNA upstream 251077 3340599 ~ 3343240 (-) True G32998
TU48594 lncRNA upstream 298762 3388284 ~ 3390379 (-) True G33008
TU48755 lncRNA upstream 517945 3607467 ~ 4098373 (-) True G33109
XM_043238144.1 mRNA downstream 10128 3000256 ~ 3012721 (-) False LOC122344624
XM_043238143.1 mRNA downstream 10128 3000256 ~ 3012721 (-) True LOC122344624
XM_043240716.1 mRNA downstream 112467 2876309 ~ 2910382 (-) True kat6a
XM_043240521.1 mRNA downstream 147956 2866165 ~ 2874893 (-) True ap3m2
XM_043240516.1 mRNA downstream 177565 2824171 ~ 2845284 (-) False tet3
XM_043238173.1 mRNA upstream 254037 3343559 ~ 3368707 (-) True gnb1l
XM_043238174.1 mRNA upstream 254038 3343560 ~ 3376526 (-) False gnb1l
XM_043240530.1 mRNA upstream 301472 3390994 ~ 3417708 (-) False txnrd2.2
XM_043240531.1 mRNA upstream 309486 3399008 ~ 3417727 (-) True txnrd2.2
XM_043240533.1 mRNA upstream 313501 3403023 ~ 3417741 (-) False txnrd2.2
TU48454 other downstream 10030 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 62672 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 416934 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 437423 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 468703 2496504 ~ 2554146 (-) True G32857
TU48805 other upstream 795903 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 796028 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 1055405 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 1055405 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 1055405 4144927 ~ 4193081 (-) False LOC122346168

Expression Profile