RNA id: XM_043239628.1


Basic Information

Item Value
RNA id XM_043239628.1
length 7697
RNA type mRNA
GC content 0.52
exon number 27
gene id tnca
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32113896 ~ 32174064 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTTCATCCGGAGCCATGCTGCAGTTAAGTGGTCTGACTCGGTTTGGCACGGAAGCGAATCTTCAGTCACATCTTGgactttcacattttttgtcTGGCTGTAAATCAGGAAGTTAATTATTTGTTTCCTCGAGGCTGTTCCCTTCCTCAATTTATGACCTGTTCGGTCCGTTTTTATGAAGCATTGTGTTCAGACAGGCTTTTCAAAGACAGACACGTTGCTTATTAGAATTGTTAACACCTACAGAAGTTTTAACAGATGGACACGGATGCTATCGTTTGTGCAATCACTTTTTTAAACGAGCTGTCCGAGCTGCCATTGCTTGCTTTAGCGTCTTTGCATCGTTCCGATCGTTAATTACGCAcgcaaatgtattaatataaatattattctgGACCAGTTGCCAAAATCTTATTTTACGCATGCTTATATTGCTTGAAAAAGTGCTGGAAATGTTCTTGACTAATCCTGATATTACTTTGCCGTTAAATTCAATCTAAATTATAATTAGTGGTATATACGTCTCGTTTGCTATTGCATCGGATTTGAACAAAACCCCAAGTACACAGATTTATAAAAATCCTTTGGTGTTATGAATGTGAATGATTATTCTGACTCTTTTCTGTATTCCTAAGGAAGACCATACAACCTGTGAAGATGGAGATGGAGAGGCCCATCCAGAATCTGTGTCAGGCTGACATTGACCCATCCGCACTGAGCACTATCGTGTGCGACGCTTTTCCTTTGCATCTGCTTGTGAGCTGATCGTCCGGACACACAAACCACCTAGAGGCTCGGCGGGCGGGCGGGCGGACGGACGGACGGGTGTGTGGAATACATCACAGACTCTCTCAGATCTTCCGGCACGTGGAGAGACGGAGACAGACGGAAGCTGGACATCCTCACCTCGTCGCCGTTGTTTGATTCTCGTCTTCTGCACCTGATTTGCTCGGCTGCAGGGAGGCGCTGGAAGCTCCATTCATCACCGCAGAGACAGTAGCACTTTGTCCAGACTCACCAGGCAGGTCTTCTTGCCAAGACAAGCATCCATTAGTGCAGAAACATGGGTCCAGGAGGCCAGACATTCAGCTGTTTGGTTTTGGCAACCCTGATGACTCTAAATCACGCCGGCCTGGTAAAGAAGATGATCAGACACCGACGGGAAGCTCTGACGATTCCTGGCATACACAACGTGACCCTTCCGACCTCTTCCCAACCGGTCGTTTTTAACCACGTCTACAACATCAAAGTTCCCGGAAGCTCTTTGTGCTCGGTGGATCTGGACTCTCCCGCCGGTTCAGATCTCGAACAGAAGGATGCTCCATCTGGCTCGGAAGTAACAGACCACACACTGGACAGCAGTAATCAGATCGTCTTCACCCACCGCATCAATATCCCCAAGCAGGCGTGCGGCTGTATGGAGGGACTGCCGGACCTGAAGGATCTCCTGAACCGGCTGGAGATGTTGGAGGGCGAGCTGTCGACGCTCAGAGAGCAGTGCTCCACAGAAACCTCCTGCTGCAGCGCTCAGGCCACAGGTGCTATAGGAACGAAGCCCTACTGCAGCGGCCGAGGAAACTTCAGCTCGGACACCTGCGGATGCATCTGTGAGCCCGGCTGGAAGGGCCCCAACTGTACCGTTCCTGACTGTCCTGGAGACTGCAGCGACCAGGGCCGCTGCGTTAACGGAAAGTGCGAGTGTTTCGATGGCTTCACGGGCGAGGACTGCAGCATGGAGAGCTGTCCGGTTGACTGCGGAGAGAACGGCCGTTGCGTTAACGGAGCGTGCGTTTGCAGCGAAGGCTATTCCGGAGACGGTTGTACAGAGACGGACTGCCTCAACAACTGTTTGGGACGCGGCCGCTGCGTTGATAGCGAGTGCGTCTGCGATGAACCCTGGACTGGATTCGACTGCTCTGAGCTCATCTGTCCAAATGACTGCTACGACCGCGGGCGGTGCGACAACGGGACGTGTTATTGCGATAAAGGCTTCACCGGAGAGGACTGCGGCACGATCGCTTGTCCGAATGACTGCTCGGGACAAGGTTTTTGCATCGACGGCCGTTGCGTGTGCACCGCTGGCTACTCCGGAGAGGATTGTTCTGGCTTGACCTGTCCGAACGACTGCCACCAAAGAGGGCGCTGTTTCAACGGCGTGTGCATTTGCGAAATGGGATATTTCGGTGAGGACTGCGGGAAGCTCTCCTGTCCGAATAATTGCAATGGCAGAGGGCGCTGCGTTGAAGGCCGCTGCGAATGTGACGTGGGATTCCAGGGTCACGATTGTTCGGAGTTTAGCTGCCCTAATGATTGCAACAATCGTGGACGATGCGTTAACGGCCAGTGCGTTTGCGAAGAGGGATTCGGCGGAGAGGACTGCAGCATCAAAACATGTCCGTCGAACTGCTACGGCCGCGGCCAGTGCGTGGACGGGAAGTGCGTTTGCTTTGCGGACTTCACCGGCGAAGACTGCAGTGAACTGAGCTGCCCGAGCAACTGCCTGAATCGCGGACGGTGCATTGCGGGACAGTGCGTTTGTGACGAAGGCTTCACCGGAGAGGACTGCGGTCAAAGAAAGTGTGTGAATGACTGTCTCGGACGTGGACGGTGCGTGGAGGGACAGTGTGTTTGCCAGGACGGATTTGAGGGCCCGGATTGCTCCGTTACCACCTGTCCTGGAAACTGCAATAACCGTGGGCGCTGTTTCAAtgggaaatgtgtgtgtgaccagGGATTCGTTGGAGACGCCTGTGGAGAAAGAAGCTGTCCGAATGACTGTAATAGTGCGGGGCAATGTGTGGACGGCCGCTGCGTGTGCGATGAAGGCCACATTGGCGAGGATTGCTCTGAAGTCTCACCACCGGAAGACCTGACCGTCACGGATGTGAGCACGGAGAAGGTGAACCTCACATGGAGGAACGAGATGCTGGTGACGGAGTATTTGGTGACGTACGTCCCGACGTCACCGGGAGGCCTGCAGCTGGACTTCCGCGTGCCTGGAGATCGTACGTCTGCTACCGTCTCCGAGCTGGAGCCGGGAATAGAGTATCTCATCAACGTCTATGCCGTCCTCAACAACAAGAAGAGCGTTCCTGTCAGTGCCAGGGTGTCCACGTACCTACCCCAGCCTGAGGGCCTGAAGTTTAAATCCATCAGTGATACGTCTGTGGAGGTTTTGTGGGACCAGCTGAACTTCCCATTCGACGGCTGGGAGCTCATCTTCCGTAACACGAAGGAAGAAAACGGGAAGATAGTGAACAATCCCACGCCTTCCCAGACCAACTTTGAGCAACAGGGACTCGGGCCGGGACAGGAATATGAAGTGACTTTGTCAGTCGTGAAGAACGACACCAGAGGACCCGAGGCGAGCTCGACCGTAGTAACAAGAATCGATTCTCCAGGGCAGATTGACGTTGGCGACGTGACCGACCGGTCTGCGGTGATCTCCTGGTCCAGGCCCGTGGCTGAGGTGGACGGGTTCAGGGTGTCGTACGGGCCGAGCACAGACCCGTTAGTCCGCCGAGATGTAGACCGCCCGGCCACAGACACGCAGTACAGCCTGGAAGACCTCAAACCAGACACTGAATACAGAGTCTCTCTCAGCTCAAAGAGGGCAGACGTGACCAGCGAGCCCATCTTTGAGAGCTTCACCACAGGTCTGGATGCCCCCACTGACCTCAAAGCTGTTGATCAGACCGACAGCAGCATCACGCTGGAGTGGAAAAACAGCCGCTCGTCCATCGACGGATACCGCGTCAAGTACGGCCCGATCGCGGGAGGAGGTCACGGTGAAGACACGTTCCCTAGAAGAGCTGGAGACACCACATGGGCCACGATTACAGGCCTAAAGCCTGGAGCGGAGTACGGCATCGGAGTCACAGCCATtcagaatgaaagagagagcgagccagCGACCACCAACGCACTGACCGATCTGGATCCACCACGGGACCTGGAAGTGCGAGACTCTACCGAAACCACCCTGGAACTGGTCTGGAAGAGGCCCAGGGCCAAAATCTCCACCTACAGGCTAGCGTTCGTCTCCGCCGACGGCCGACGGGAAGAAGTGGAGCTGCCGGTTACCGCGACCAGCTACACCCTGAGCGGCCTGAGCCCGGGCATGCACTACACCGTCACCCTCGTGGCAGAACGTGGGCGGAGGAGAAGCGTTCCCGCCACCGTCACCGCCTCCACAGCATCGTTCACTTTTTATCTAGCGAACACATTTCCCGAGCTCGGTTCAGCCAAAGGCACCGATGACAATGTCATTAGCTTTGTGTCTCTCGACAACTCAGAGATGCCGTTCTCTGGGAGCGGATACGAGGATCCCACTGGCAGCTTGACCGTGTCGAATGTCACATCCGAAGGATTTGATCTTGTGTGGGAGTCAAATAAACACGTTGGCTATGATAGTTACACTGTAGAACTTAAAGATTTCTCAGGGAAGTGGAAGGAAGAGGTTCATCTCCGTGGGGAGGTGAACCAAACTCAAATCCGTGGCCTAAAGGCTTCCATGGAGTACCAAGTAAGGCTTTATGGAATATCCAATAACCAAAGATCTTCTCTACTAGAAGCAGTTGCAGTTACAGCACCAAAGTCTACCTCTCCTGACGTTGTTGCTTTGACCTTCAAAAGTGTTTCAACAACGCTACCAAGCCTCCATAAGGAGGTTCAGCCATCAGTGCCTACCTCCACTCTTTTAACAGAGGATTTTAAAGCTGAAGCCTCAGGTGATGAACTCGAGGGCCCGAATCAAGGGCCTCCGGGTGACCTAAGCGTCACTGACGTGAGCAGGAATAGTTTGAGGCTGTCTTGGTCGGCTCCTGAAGGAGCCTTCGATAGCTTCATCGTTGAGTTGAACTCAACATCGAATAAGTCCAAAGACAGTGTTATTGAAGTGTCTGGAGAAGCCAGGCAGGTCCATGTAGATGGGCTGAACCCTGACACGCTTTATCAGATTACATTGAAAGGGATGAAGGAGGGCGAGAAATCCCAACCGGTCAATGTTCACATCAAGACAGAGGAGCAGGGGCCGCAGATTGGCAGTCTGAGTGTGTCTGATGTATCTTGGGATAGCTTCAATGTGTCCTGGACCATTGAGGATGGCTCTGCCTTTGACAGTTTTGTGATTGAAGTGGCTAATGCAGCAGGTCCAGAAAGACAGAACCTGTCGGTATCTGGTGATGCACGTAGTTTATGGATGTCTGGGCTCAGTCCCGCCACATCCTACGTAATTACATTATACGGAGTGCATCAGGGCTCCATCCTGGGGTCGATCTACACTCAAGCAGCTACAGAAGCAGAACCAGAGATCGAGCACCTTTTCGTGTCGGACGTCACCCCTGAGAGTTTCCGGCTGGCTTGGACGGCAGAAGACGACGTCTTCGATCGATTCGTGCTCAAAGTTAGAGACTCGAGAAAACTCTCCCACCCTCGAGAGTTCGTTGTGCCGGGCGATGAAAGAACCAAAGTTTTAACGCAGCTTTTGGGGGGAACCGAGTATGAAATTGAGCTTTACGGTGTGACGCTGGAACATCGCTCCCAAGCCGTTACTGCTGTTGCCAGAACAGGCCTTGGAGCTCTACGCGACCTTCGTTTCTCCGACATCACGGACACAACAGCTGTGGTCTCCTGGACCGTACCTCGATCTCAGCCAGACTCCTACAGAATCACTTACTTCCCGGCCCAAGGAGGTACTCCCGTGGTCCTGATGGTGGACGGGTCCCAGTCTCAGGTGGACCTGACTAATCTGCTTCCTGGAGAGGTGTATCAGTTGTCGGTTATTGCAGTGAAAGGTCTGGAGGAGAGCGAACCAGTGTCCGACACTTTTACAACAGCCCTGGATACCCCACGTAGCCTGACTGCTGTCAATGTCACTGACACAAAGGCGCTGTTGCTGTGGCAACCCGCCGTAGCAACCGTGGATGGATATGTGATCACATACAGCGCAGACACCGTGCCACCGATATCGGAGCAGGTTTCTGGAAACACCGTGGACTTTGAGATGAGCTCACTGGCTCCCGCGACTCAGTACGCTGTCAATGTTTATGCCATCAGAAACCGAGAGAAAAGCGCCCCGGCGACCACAGACTTCACCACAGATGTGGACGCTCCTCGTGATCTGGTTGCCAGTAATATTCAGACGGACAGCGCGGTTCTCACCTGGACGCCGCCGCGGGCCGCCATCACCGGATATATCCTGACCTTTCAAGCGTCTGACGGCGATGTCGGGGAGCTGAATCTAGAGGCGTCTGCGACCTCACACAGTCTGTCTGACCTGAGCAGCAGCACCGAACACACGGTCAGGCTGCAGGCCGTCGCCGACGACAAGAGGAGCTCACAGATCAGCACCGTCTTCACCACAGTTGGCATGCGCTTCAAGAACACCAAAGACTGCTCAGAAGCTCTGCTGAACGGAGAGACGTCCTCCGGGCCGTACACCATCTACATCAGTGGAGATGAGAAGCAGCCGGTCCGGGTTTACTGTGACATGAGCACAGACGGCGGCGGCTGGATGGTGTTCCTGCGGCGTCAGAGCGGCAAGCTGGATTTCTACAAGAACTGGAGGAACTACTCGGCAGGATTCGGGGACGTGAGCGATGAGTTCTGGCTCGGACTTTCAAATCTTCACAAAATCACCTCGGCCGGCCAGTACGAGCTGCGCGTGGACCTGCGCGACGGACCGGAGAGCGTGTTCGCCGTCTATGATAAATTTTACATCGCGGATCCTCGTTCCCGATACAAGATCCAGATCGGTGCATACAGCGGTACAGCAGGCGATTCCTTGTCGTATCACCAGAACAGACCTTTCTCCACCTATGACAATGACAATGACATTGCGGTCACTAACTGTGCGCTGTCCTACAAGGGAGCGTTCTGGTATAAAAACTGCCATCGAGTCAACCTGATGGGGAAATACGGAGACAGCAGTCACAGCAAGGGCATCAATTGGTTCCACTGGAAAGGCCACGAGCATTCGATTCCATTCGCGGAGATGAAGATCCGGCCGGTCAATTTCAGAAACTTGGAAGGCAGACGGAAAAGATCATAGACTTTAAACGTACCCGCACGTCTCTCTTCGTCACAGACAGATACCATTAGATCTTCTAAGCGAAACATTTCTAGCCGTTTGAACTCTGCCTTCCACGTCATCGCCAACAAATACTGTTTCATTAGACCTTTGATATGTTCTAAACGTCCTGAAGGGTTTTACACCAACCTGGTAGAAACAGACACGTCAAATGTGATGTTTGAAACACGGTACAAGATCTCCCAATAGCAAACCATTTTGGGAAGGATTGAAGTAAATATCCAATGACCTTTCTGTTCAGAAGAGGAAGTGTATTCGAGACcagtgatgtcatttcctcaaCTGACGCAATAGCACCCTCGGGTCTGACATACAGTAGCCAGGACCgtgcaaatgttcattttgtcGGTTTTCAGAATTAAAGAAGCAAATTTCAATGTGATTGTTTTCTGAAAAGACTGTATGACAAGCCGGTTTGCTTACTGATGTATTACTgatcatttgtttgtgaaatttatttttataatctttgTTTTGTCCCCCATAGAGTCCTCAGTATCTAtcattcctaaaaaaaaaaaaagtgctgattAAGCTGTATCTTTTCTCCTGGAATGTCTAAAAGTGATCTTCAACaaaataggaaataaaaatgtaatttgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60812 lncRNA downstream 135430 31977714 ~ 31978466 (-) True G41065
TU60811 lncRNA downstream 136845 31975936 ~ 31977051 (-) True G41064
TU60785 lncRNA downstream 209109 31723742 ~ 31904787 (-) True G41047
TU60963 lncRNA upstream 212711 32386127 ~ 32386472 (-) True G41177
TU60989 lncRNA upstream 265203 32438619 ~ 32439145 (-) True G41198
TU60982 lncRNA upstream 270866 32444282 ~ 32445281 (-) True G41191
TU61018 lncRNA upstream 303846 32477262 ~ 32477840 (-) True G41216
TU61019 lncRNA upstream 306939 32480355 ~ 32480713 (-) True G41217
XM_043239589.1 mRNA downstream 10110 32082560 ~ 32103786 (-) False rabl6a
XM_043239591.1 mRNA downstream 10110 32082560 ~ 32103786 (-) True rabl6a
XM_043238182.1 mRNA downstream 46682 32049652 ~ 32067214 (-) False ajm1
XM_043240763.1 mRNA upstream 40615 32214031 ~ 32293776 (-) False LOC122346090
XM_043240762.1 mRNA upstream 40615 32214031 ~ 32293775 (-) False LOC122346090
XM_043240756.1 mRNA upstream 127943 32301359 ~ 32310140 (-) True zgc:73226
XM_043240757.1 mRNA upstream 139383 32312799 ~ 32314631 (-) True LOC122346085
XM_043240476.1 mRNA upstream 142271 32315687 ~ 32342744 (-) True LOC122345937
TU60769 other downstream 390990 31721270 ~ 31722906 (-) True G41035
XR_006251005.1 other downstream 402159 31702453 ~ 31711737 (-) True apooa
TU60335 other downstream 1287538 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 1287538 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 1321177 30789633 ~ 30792719 (-) True G40713
XR_006251085.1 other upstream 40860 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 40876 32214292 ~ 32293782 (-) False LOC122346090
XR_006251087.1 other upstream 40877 32214293 ~ 32293782 (-) True LOC122346090
XR_006251089.1 other upstream 40879 32214295 ~ 32293782 (-) False LOC122346090
XR_006251088.1 other upstream 80105 32253521 ~ 32293782 (-) False LOC122346090

Expression Profile