RNA id: XM_043239632.1


Basic Information

Item Value
RNA id XM_043239632.1
length 5028
RNA type mRNA
GC content 0.52
exon number 24
gene id golga3
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5412669 ~ 5429468 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGGATCTGTTTAAAGGACGGAACCTAAACAGCCACGTAGTATAGGCAGGAGCACGTCTGAGGATCACCGAGGACTCGAGCTGTCTGCACCCTCCGGGCCAGCCTGCAGTCTTAACCAAAGATTACAGAGCATGAAGTAAAGGTGAATTGCACTAGTGGGAGCCAGCTCATGTTCATGGATGCTAGAGCAGCATCTGTGGTTCAAGAAATatggaaaatggaaataatGAAACCACCTCAGTGGAGGCCAACCCTGAGCAGCCGGACGCACAACATGGCAAAGACCCAGGAAGCAATACTGTAGAGTCTCTGAAGCCGGAGATATCCCTCGTAATGGAGAAAATCCCTAACGGCCATGTCAAAGCAGAGCTGTTGCCAAACGGAGAGGCCGTGGTGGAGTGTCAGGAAAGTCCCGGAGGCAGCACCCCACCTCTGGCAGCTCCATCCCCGGGCAGCCGCCTTCCCGATTCCCCTCTGAGCGCAGAGCCGGATCCAGGTGTGGCCTCTTTCCCTGACAGCCTAGAGAAGTCTGAGGCAGCTCTTGCAGAGGGCTCTATTCACAAGGGTGACGCATTGCAATCGCTCAGACTAAGTATTCCTATGCAGGAGACTGAATTGTCATCAAAAGAGCCATCGGTGGAGAtggaaaatgaagaaaaaatccGCCAGGAAGCTCGTCGGCGTCTGGAGGAACAGCTCAAACAATACAGAGTACAGCGGCACACCGAGAGAACCCGGCGTTCCACTCCTAAGAGCCGCCCATTCAGCACTTTGGACCCGGAGCTCATGCTCCACCCCGAGGGTCTCCCACGGGCCAGTACTGTCGCCATGACTAAAGAATACTCTTTCCTGCGCACCAGCGTTCCTCGCGGTCCCAAACTGGGAAGCCTGGGGATCCCTTCAAGCAAGGAGAAGAAATCCAAATCATCTCGCTCCAACAAGATCCACTCTCTGGCCGACTACAGAACTCCTGAATCTGACGCTAAAAGCACAGATGCGCCGGGCGGGCTAGTTTCGGCGTCGGCCGACTCGTCGTTTAGCTCTCTCCACTCCACCATCAGCTCGGTCTCCACAGTTTCGGAAATCAGCGTCAATTCCGAGACCAACGCTCACGAATCATCTCAGCTAATCAGAGACAACGTCTCTGAGGTGGATGGAAGCGAATCGGGTTTCAGAGCTGATGGTAATGACAGCGATAGCTCGTCTTATAGTAGCGTGTCTACTACAGGGACATATAATATGTTAGCTGCAATAGTGAACCGGCCAAAGGCTCCATATACTGTCGAAGGGAGGGAGATTGCTCCGGAAGCCATGGGCCACTTTCCATCACTGCAGCAAGTCCTGCAGGCAGCCTCTGAAGAGAGGCACATGGAAGAGCTGGAGCAGGAAAGAGAGGGCAGCGTGGAGCCTCGCAGTCGCAGGGACAGCTTCTCCAGCAGTGTGTCGTATGGGAGCTCTGTGATGGGGACTCATGATGAGATGCTGCAAGtgctgaaagagaaaatgaggTTAGAAGGACAACTGGAGTCTCTTTCCTCCGAGGCCAATCAGGCTCTGAAGGAAAAGACAGAGCTCCAGGCCCAGCTGGCTACAGTAAGCGCCCAGTTGCAGGCCCAGGTGAAGCAGACCCAGGCCAGTCAGGAGAAGCAGAGCACCCTCACCTCCGAAGTCACCACACTACGCTCCAGCTGCTCTGCTCTGGAGAAGGCCATGGTGGATCTCCAGGCCAATCTGGAGGGGAAGAATGCCAGTCTGTCCTCATTGGGCAATGACCTGCAGCTGGCTGAAGAGCAGTACCAGAGGCTCATGGTCAAAGTTGAGGAGATGCAGCAGAGCCTGAATACCAAGGACAACACAGTCTCTGAGCTGCGGCAGCAGATGGGAGGCCTACAAGCACAGCTTCAGCGGGTCCAGAGCGAGAGGAACGCTCTGCAGAGCAGACTGAAGACCTCACAGGCAGAGGTGGACTCTCTACAGCAGCTCCGCCTCTGGTACCAGCAGCAACTGACTGTGGCACAGGAGGCACGAGTGCGACTGCAGGGAGAGATGGCAAACATGCAGGCGGGTCAGATGACTCAGATCGGCGTGTTGGAAAATCTAAAGATGGAGAACGTTACTCTGTCTCATAAACTCACGGAGACGaaacatcaatcaatcaaagaGAAGGAACGGATTGCTGTGCAGCTACAGAGTATAGAGGTAGACATGTTGACTCAAGAAGCAGCCATCCATCAAATTCAGGAGGCAAAGTCAATGGTAGAGGAAGATCTTCAGCGCAAGCTAGAAGAGTTTGAAGAGGAGCGAGAGCATCTGCTCAAACTTGCCAACACGGCAACAACACTGGAGCGAGAGCTCGATCAGGTCAAACTCATTCTCTCCCAAAAAGATGCCCAGCTTGAATCGCTTCAGCGCGAGCACCTAGAGCTGATGAAGCAGCTCACCATTACTCAGGAGACCCTCCAAACCAAAGAACAGGCCCTTAATCAGCTGGAGGCACGTTACCAGGAGCTTCAGGCCCAGCTGGAGGAGCTGCAAAACGATGCCACAGCTAAAGAGGAAACCATGCAGTATCTCCAAAATGAGAAAATAGTACTGGAAGTTGCTCTGCAGGCGGCACGGGCTGATAAGAGCGAACTGGATGAAGGAGCGGAAAGGCTTGGGGAGGAAGTGCTGGTGGCGTCCGACACTCTTGACCAGCTTAGGCAGGAAGTGCAGGTTAAATCAACCCAGATTGAAGCTCTCCAGCAAGAGAATGGCAACCTCAAAAAACAAGCACAGAAACTAAAAGAGCAGTTCATGCAGCAGAAGGTAATGGTTGAAGCTTACAGGAGAGATGCCAGCTCCAAAGACCAGTTGATCTCGGAGTTGAAGGCTTCTAAAAAGCGACTGGTGGCGGAGGTGAAGGACCTGAAGCAGGAGCTGTTAAAAATGGAGGGAGAAAAGAAGAGCGCAGAACAGGAACAGGCTCGCCTGCAGAAGGAGGTGGAGAGAGTCCAGCAGCAAATGAACGGTCTGGAAGCCCATTTACAATCtgtacagacagagagagaccaACTTGACTCTCAGCTGCAGTCCCTTCAGTTTGACCAGAACCAGCTGGCGGCTGTGACCGAGGAGAATGAAAATCTGAGAAAGAGGATCGAACAAATGCAGGATGAAGCCAGAAAGGCTATCTCGGAGCAGAAGGTGAAGATGAAGCGTATAGGCACAGATTTGACCAGTGCACAGAAGGAGATGAAGGCCAAGCATAAGGCCTATGAGAACGCAGTTGGCATTCTGAGCCGCAGGCTGCAGGAAGCCCTCACCGCCAAAGAGACAGCTGAAGCTGAACTTGACAAACTCAGAGCCCAGGTTTCAGAGGGTGGAAACAGCCAAGAACTTCAGGCCAAGCTAGAGTCCCTGCAGGGAGAACTGAAGGCAGTGAGCCAGAGTAAAGCCATGCTGGAGAAAGAGCTACAGGAGGTCATCACCCTCACTAGCACGGAGCTGGAGGAATATCAGGAGAAAGTGCTGGAACTGGAAGACGAGCTTCAGGAGTCAAGAAATTTTAAGAAGAGAATTCGTCGCCTGGAGGATGCCAATAAAAAGCTCGCACTTGAGCTAGAGCATGAGAAAGGGAAGCTCTCTGGGCTTGGGAAATCCCACAGTGCATTGCGGGAACATGCCAATATTCTTGAGGCTGCATTGGCAAAGAGAGAAGCAGATCTGGTCCAGCTCAACTTACAGGTTCAGGCAGTGTTAAAGCGTAAAGAAGAAGAGGACCAGCAGATGAGGCAGTTGGTGCAGACGCTTCAGGCTGCtctggagaaagagaaaataaaagtcaaGGATCTGACGGAGCAGGTGGCGGAGGCCAAGCTGGAGGCAGCCCATAACCGCAGGCATTACAGAGCGGCCATGCTGGAACTCGGCGAGATCAAGAAAGACCTGCAGTCCAAAGAAGAGCTCATCAAAACCCTGCAGAAAGAGGCTAAAACACTTGCGGCTCAAGATGAGAAGCACTCCGAAGAGGTTTCTCATTTCCAGGAGGAATTAGCCGATGCTCACTCTCAACTCCAGATCCTTCAAAAACAGCTTGACGATGAGCTCAGCAAACAGCCTCTCACTAACCAAGAGGTGGAGGATCTGAAGTGGGAGGTGGAGCAGAGGCAGCGGGACATCGAGACACAGAAACAGCAGCTGGACATGGTGGAACAGTGTCACCAGAGAGAGATGGACACCCTGCAGGACACTCTACAGAGGATAAAGGTGGAGCTGGAGATGGTTCAGGAAGAGCTCAATGGCACGCGGAAGGATAAATTCAAGCTGCAGGCTAAAGTGGGAGAGCTGAGGAACAGCATGAAGACCGTTCTTCAGCAGAACAACCAGCTCAAACAGGACCTCAAAAACGGCAAGCTCAGAAAGAGGATGGAAGTAAAGGGGGAGTCAACCCCAGTGACTCCGGTAAAAATCCCAGACTGCCCCGTTCCTGCTTCGCTTTTGGACGAACTGTTGAAACCCTCAGCGTCCGTCAATAAAGAACCTCTCAATAACCTCCACAACTGTCTGAAACAGCTGAAGCAGGAGATGGACAGCCTTCAGAAGCAGATGGAGGAACACACGGTCACCGTGACGTCGCTGGCCAGTGCAGAGGAGGAGCTCCAGAAACTGGGGCTTCATGACGGCGGTAGCAACGGATCGCCCGATAAAGAAGAGAGCGATGAGATGCAGCCCTCGTAATACACGAAGAATCCTTTAAAGACATTGTTATTATCGGAGGAGAAAGTTCAGTTTTATCTCTACGGGCACTTTTGAGTTTCTTTATTCCTTATCAACCGCCAATATTTGGCTTTATCCCTTGCTAACCAAGATTGTTCGCTTTACTTTCGGGGGTCACTTTGGTGTTCGTTTGCGTTGTActcactatttattttaatgttaaacgAATagagcttctctctctctctctctatgtctctctctctctctctatgtctctctctctctctctctctctctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251035.1 lncRNA downstream 243420 5142578 ~ 5169249 (-) False LOC122345808
XR_006251034.1 lncRNA downstream 243420 5142578 ~ 5169249 (-) True LOC122345808
XR_006251036.1 lncRNA downstream 243420 5146350 ~ 5169249 (-) False LOC122345808
TU49076 lncRNA downstream 336635 5075761 ~ 5076034 (-) True G33334
TU49075 lncRNA downstream 358766 5034111 ~ 5053903 (-) True G33333
XR_006250957.1 lncRNA upstream 144696 5574164 ~ 5597629 (-) True LOC122344984
TU49160 lncRNA upstream 152675 5582143 ~ 5584600 (-) False LOC122344984
TU49165 lncRNA upstream 158577 5588045 ~ 5589905 (-) False LOC122344983
TU49166 lncRNA upstream 158577 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA upstream 159459 5588927 ~ 5595020 (-) False LOC122344983
XM_043238769.1 mRNA downstream 2175 5398894 ~ 5410494 (-) True ankle2
XM_043238768.1 mRNA downstream 3555 5398894 ~ 5409114 (-) False ankle2
XM_043238772.1 mRNA downstream 19040 5388819 ~ 5393629 (-) False poli
XM_043238771.1 mRNA downstream 19040 5388819 ~ 5393629 (-) True poli
XM_043240187.1 mRNA downstream 24344 5383555 ~ 5388325 (-) True LOC122345752
XM_043238965.1 mRNA upstream 1098 5430566 ~ 5435131 (-) True ranbp1
XM_043238962.1 mRNA upstream 6509 5435977 ~ 5454756 (-) False LOC122345133
XM_043238964.1 mRNA upstream 6509 5435977 ~ 5454756 (-) False LOC122345133
XM_043238959.1 mRNA upstream 6509 5435977 ~ 5454756 (-) True LOC122345133
XM_043238960.1 mRNA upstream 6509 5435977 ~ 5449196 (-) False LOC122345133
TU48850 other downstream 789611 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1219588 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 1219588 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 1219588 4144927 ~ 4193081 (-) False LOC122346168
TU48804 other downstream 1518194 3885550 ~ 3894475 (-) False piwil2
XR_006251120.1 other upstream 1796 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 526831 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1394703 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1493962 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1501404 6930872 ~ 6943203 (-) False usp20

Expression Profile