RNA id: XM_043239654.1


Basic Information

Item Value
RNA id XM_043239654.1
length 5854
RNA type mRNA
GC content 0.38
exon number 7
gene id scn4bb
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14014414 ~ 14024552 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggaggaggagggagaaaAGGAGCAGAGATAGAAGGGGTGAGAGGAAGGAAGGGAGAGACAGGCAGTCAGCCAAGGAGGGGAAAAGTTGAGTGTGAGCCAGATTTTAGCCGAtttttcagagagagagagagagagaggagggggggCTGCTGTTGAACAGACTAGCTGCAGTTGTCCTCAGACCTCCAGTGCTTCAATGCTCTTCACTTCTGTTTTACCGGCTGGATTGCGCGTGTCCCTCAAAAGGACACACAGATTTACCTGCTTAACAGAGGTCAGGGGACAACCAAATAACCGAAAAACGGTGCCAGATGGAGTTCTAGAAACTTCTTATTCTCAGCTGGGCAGATCCTTGTGCTTCCAGATCTCTTGAGACCTCGACAGGCCTTTGACAGAAGGAATCTTATGTTTGACTTTAGGAACTGCAAGCACAGATTGATCTAGAGCACAAGAGCTGAGAAGCGTACAGGAGCCTTTGCATCTTGAGGACTTCTGGGAAACTGACAAAACTGGACGTGAACTGCTGAGGAAGACAGGTGCACCTGAAAGTTAAGTGGAGGATGGAGACACAGAGCAGAGGACGACTGAGAGGAGGCGGTGGTGGCGTGCCTTCAGAAAGAACTGCGTGCTGTCTTCTGCTCACACTCATCATTGGTGTGTGCTGCGTTCATGCTCTGGAGATGTCTACCGGTAAGATTCCATTTCTAGAAGCAGTGAATGGCAGCACAGTCCTTCTGCCCTGCACATATGCCAGTTGCATTGGGATCACTAACCTCTACTTCAAATGGGAGTTCAATGATAATGGCACCATGCAGAAGGTGGCTGATTCTGTAATTCCAACAGACCATGTGGAGCCAAATAAAGTGAATGTTTACCGTGAGAGAGTGGACTATGTTGGCTCcagtaaagaaaataacatcTCCATCCTGCTTTGGAATGTAACATTTGAGGATGCAGGAGTCTACACCTGCTTTGGCAAAAACCCCAAAGAGAAGGGCAAGAATCACAGCGCCTATTTCACTCTATATGTGGTAGAGGAATTAAAGCAGGTTGATAACACACTTACCATCATCATTGCCTCCTGTGTCGGCGGATTCATCGCTTTGTTAATGACGTTCATGCTGCTAAAGAACTTCACTCTGTTCGTTCTCGCAAAgattgaggaaaaaaatAAGGAGTGCCTTGTCACCTCCTCAGGGATTGATAACACAGAGAACGGTCTGTCGGGCTCCAAATCTACACCAAAGAAAGCATGACAGCGTGCAACCAAACACAGTCCCACATGCACGTGAACACATGGATCAGCCATCATGCTGTGCCCTCTCTTTTTATTCACATCCGTGTTTACAAATGCTATAAATAGGTTTTTATGATATAGAGCAGTCATAGTAGGcctattaaaggggtcatcagaTGCAACATACATGCACTTTTGCAACTGAAATGCGTTGGCAGTGTGTTTACACAAACACCCCTATAATGATAAAGGTCCACccagtgtattttattttaatctcatTAAATAACGTACCCTTTCTTATATAAAGCCATTCTAATTCAATGCCTGTCTGTGTGACATCACACAGCCCCCTCCCATGATTGTCGATTGACACTAACGTTTTTCTTCGCTGCCTTCACGTCATGTAGTTATTCTGAGATGACAACACTTGACATTCTACTTCTAATCTAAATTATGTGTTTCTATTGCAACACTATCAACGACAAAGCCCTCACTTGCTCCTTAATTTGTAAACTCTGACCACTGACAGATGTACCACATGACCGCTGCTAGGTTCATTTTGGCTCTACTAAGGCTGGGTACacactaaaagattttttttaagatttcacGGTTTTGCCTCTATAGTGTGTGGTGTTCCACAATGTGATGAAGACGGCACACCACACAACAGATTTTCATCCCGACTGTAAACACGGGAAATCTCGCAAAATCTCTTGAGACTtgagaataaatatgttttccaaGACACTTCGTATCGGGACATTACCTAGGATTGTCGGAAGAGGGCAAATTGGCTCAAAATTAGCCTGATTATCTTGTGGTGTGTACCCAGTCTTAGGTGCTTCCTCTGAGTCCAACAACATGGGAATCTAGGAGTAAAATACCCTGTGTTGTCATCTCAGAATTACAGCATGGCGTGAACACAACATTACCTTAGTTCTGCCATGAGTGAGCTGTCATCAGTCTGCCATTGTTCTGAAGCAGGAGCAGATGTAGTCAAGAATGGCACTTAAGCGTTATTTTGATGGATTTAATAATGAACATAGCAGTCGTCATTTACTCCTGACATCTGAGCCGTTGGATTACCTTTGTTTTTGTACGGAATGCTCCCCAGATCTATCTAAATGTGTAAATCAATTGTGATCTTGCTTCATCTACAGGAGAAGTGATTACAAAGATTCATAAAAGAACCTTATAAATCGCCTTAGCTAATGATGTGCTGCAAGGTCCGTAGCTGAAGTAAAGAGTCCCCTGGAAGAGAGGAGcagggtcagcagagctcattaccATTTAAAGGAACATGGATTAAAATGGCTTGCTGACaacagagctgattttgacaCTGTTAAAAGGTATATTATaagcttttaattattattaggaccctaaagaatcatatcaacttTCTGGAAAATGGGCAAcagatgacccctttaaaccaGATTTTCATTCATAACATTTCCATGGATgacattcataaaataattttaaacagtTGATGCATAAACACAGATATGAATAAAAAGAGGGGCACAAAGTATttctgcatatatttaaatttatatatgcatttaaatatgcacCACACATGCAGCCTCACGCACTTTAGTTTCTTGGCCCACACTGAATCTGTGGACTATATTTATTCttatgatagaaaaaaaaaaaatttcttcaacaATGCTTGACACAGGGATAAATGTAGCTATGCTATTCATTTAGTTCATTGAACTGGACTGTAAAACTGTGAAGGGCCCATGGCCTTGTTTGTACTGTAGGTATGTGACTAAAGTAGGTTtcttgtgttaaaaaaaaaaaaaaagaaaaaaagaaatgcagtgCTGTTTGTCAAACGGCCATCGACCTTGAAAAATATATCTGTTGTAGAAAGATCAGTTATGCAACAGTGTTTTGCATCGTTTTACTGACAGAAGACAGACTGTCATAGCTGGTTAATGACACTGCATGTTTTAATGCAGTACCTCTgaatagaggaaaaaaaatgaaaaaattaaaaaataaatcagtagGACATGAAGGGAGAATTAGGCCTTATTTAAACAGTCTTGAGTCCAGTTCAAAATAAACCTCATTACCgtttttgcttgaaaattaaaCACAGGTGCCTGTTAATGCTTCTGTCGCCACCTTTTCGGCGAGGTTGACTGAATCAATGCAGAAcattacaatgcaaaaaaaagaagaaaaaaaaagcgctGCAAAAGCCACCAAACAGTTAGTTAATACAAGCTAATGAATGATACTTGACAATCTGTAGAAATCAGTATCCTCTTAGAGAAATCCCTGaatgaaacactgaaaatgctGCTTCAAATAATTTTCAATGCATTATAGCATGTGTTAAATGGCCAGAAGTTTTAGGAGTACATTGCTGACTATAACAGTAGAAACATTGtatgtaatgcttttttattgaaatattgaaacaaaattgTCACATACTGAACATAGTTATCATCAgctttgaaacaaaacaaaaaaaatagctggGTGAATTtccatgcaaaacaaaatatgattaccaaaagggggaaaaaaaattatataaccTTTTGATGCAAACAGACATACTGTGACCGGAAAACCATGCAGCTCACCCTATGACataatgaaaatgcaatatttaaaaaggcAATAAACTCATCATCATACGGTCATGCAAAACAAGTAACTAAAtgaaacagtatatatatgatgtaaatatagatttaataaTCGAGACATGGCTGAATATAGTCTCAAATTTTCAGAAGTTCAGCTAATAAGCATTTCAAACTTTCACTTGAAGGATTCAGGGAATTCAGTGGAGACAAGAGAAGGGACTGACGTCAAGCAAGTCTGGTGAGGTCTGTTCATTCAGTTAGAAAAGAAATATCAATAATCAATagacaaaatgtacaaataatctgtttttaaaatacagaggTGCTGTACAAAACTCTAAACGACTGACAACAGATTATcccattattttaattcaatttttgtCCCTttagttaaattttatttagtgAGATTTTAACAAAGCTGTTAATATAAATGCTGAAACAAATCTAATGATTTGCTTTAGAGAGCTCACCAGTTACTAATGAAtccttgatatttttttttacaggtctTCAGATTTTGCAATTGTAAATGTTACTGTGAATCTTGAATGATGTTGGTCAAGTCTTCCTTAAAAAAGCAGCTTGTTTTCAGTGCCAAATATACAATCTAGTCAGACGTTGTAACTATAGAGCACAAGAAACCGTAGGAGAAATCTGGTACATTAATACCATATTTGGACCTGAAAAACATCTATAAAAGCAATGTGTACTGTATTACCCCTATGTAACATCACTAAATGTCTATTAAAACTGGAATTTAATTtggaaatatatttaacattgtaAAGGGGAGTAGCTGAAATTATGTTTGTTAACGGGTAAAAACAGTTGTGAATGTTATTAATCCTcagattgtttttaaatatattatggcACACATGTCCGTAAAGCAATACACATTTAGAGGGCTCTTTTgcttcttttaataagaaatattggAAAGgtacattcatacattttcaaagcacTTGTACTACCTCTTATTCAAACATGTTCATATGATTGTGCTAAAcctgcatttaatattttagaacagTTGAGGTTTTCTCAGGTCGCTCAGTGAAAGAGTTTGATATTCTGCTTGATGTTGggcttttaattaatgttatcCTTACGGTCTCCCCTCTATTAATGcactattttattaacattagttttGGTTGCATTATTTGTCATGTATAGTCATGGTCTAAAATTGTGAATCACATTTTTCAACCAAACCACAAACATTAGGAGTGAATGCAAAGGGGAAGTTTCCACCATTATTTGAAGTGAATGTTTTTCCTAAAAAGCATTTCTCTGTTGATCTTTTGACACTGGAATGCGTGTCCGAAACCCTCAAAACAGACTAACATTTAACGTAGCCAAAAACTGATTCTAAAAACTTGTGTGAAGCTTTGTGGAAaacctgaaaaagaaaatgcctGAGACAAAGCAATAACAGAGGATGTGGAAGAAACCAATTAAAAAGGTGGAtgactgcttttatttttttcagttaattgtagtttttagtCATTCAGATGGATGGAGAAAATGTCTTATAATGGGAAAAACccagaatactttttttttgctttatgaaGACTGAGCTACACCAGATTGTTGAGACAAAAATGTAAGACCAAGGGGAATAGAGGCCTCAAGGACTCAAACGTCCACAGAGTCAGTAGAACACTGCCTTAGAGGAGTACTGATGGAAAATGACTTGGAATTTAAACCAATCTGGTTTAACCAAACCAAAATGGTTGATCTGAGCTCAACACACAGTAGACATTGTTTGACATCAGTCCCTGTAAAACTGAATGTAAAACACATGATGTATCATAGATGCGCCACTCAGCCCATTATCCAGAAATCTTGATCCCATTGTTTCTTTAGGCCAGTGTGCAGGCCTGTTATTCCCCATTGGACTGCACAGTCATgcatatatttctttataataagaagcaactaaaataaaatgttttggataAAACAA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53602 lncRNA downstream 37344 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA downstream 37344 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA downstream 37344 13975352 ~ 13977070 (-) False G36385
TU53531 lncRNA downstream 195080 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 300994 13712680 ~ 13713420 (-) True G36297
TU53878 lncRNA upstream 251544 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA upstream 255122 14279674 ~ 14282516 (-) True znhit1
TU53914 lncRNA upstream 286072 14310624 ~ 14310860 (-) True G36561
TU53915 lncRNA upstream 286410 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 287216 14311768 ~ 14320994 (-) True G36537
XM_043239549.1 mRNA downstream 4878 14001934 ~ 14009536 (-) False tmprss13b
XM_043239552.1 mRNA downstream 4878 14001934 ~ 14009536 (-) False tmprss13b
XM_043239551.1 mRNA downstream 4878 14001934 ~ 14009536 (-) True tmprss13b
XM_043239550.1 mRNA downstream 4878 14002973 ~ 14009536 (-) False tmprss13b
XM_043239554.1 mRNA downstream 12339 14000559 ~ 14002075 (-) True fxyd2
XM_043239655.1 mRNA upstream 3865 14028417 ~ 14032586 (-) True mpzl2b
XM_043238794.1 mRNA upstream 16430 14040982 ~ 14056705 (-) False rnf214
XM_043238795.1 mRNA upstream 16430 14040982 ~ 14047407 (-) False rnf214
XM_043238793.1 mRNA upstream 22398 14046950 ~ 14056705 (-) False rnf214
XM_043238788.1 mRNA upstream 22398 14046950 ~ 14056705 (-) False rnf214
XR_006251003.1 other downstream 4878 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other downstream 4878 14003214 ~ 14009536 (-) False tmprss13b
TU53547 other downstream 166355 13846378 ~ 13848059 (-) False LOC122345901
unassigned_transcript_957 other downstream 169455 13844887 ~ 13844959 (-) True trnam-cau_27
unassigned_transcript_956 other downstream 175452 13838890 ~ 13838962 (-) True trnam-cau_26
XR_006250968.1 other upstream 20925 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other upstream 20925 14045477 ~ 14056705 (-) True rnf214
TU53907 other upstream 267511 14292063 ~ 14302381 (-) True LOC122345141
XR_006251010.1 other upstream 1181399 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 1271466 15296018 ~ 15308440 (-) False zfr

Expression Profile