RNA id: XM_043239660.1



Basic Information


Item Value
RNA id XM_043239660.1
length 2904
RNA type mRNA
GC content 0.48
exon number 10
gene id si:ch211-114c12.2
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10973213 ~ 10979926 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGCCCCTCGGTGACGTCACCACGGCCGCAGCTGTTCGGCTCGTCTGAATGTAATTTCACAGACAAGTCGAGCTCTTCGACGGAATGACTTCGATGTAACTACGAAGGCGACggatttttgttaattttgagAGCGCGTACTGTTCATCTTCGATGCGTAACGTCGTATAACGGAAGACGGTTGTTAGCTAGCTATCACGGCTAAGCGTTTGCTGATGAACTAGATTTGGTGATCTGTTTTCGTGTCGGACAACCTTGGATAGGTTTAACAGCTGAAAAATGGTGAGACCACATTCAGGATCTCCTCGTTCCAAACACAGgcCATTCTCGGACAACTACAGCAGCATGAATCATGAAGGGCGATTTGGCCCCCCTTCAAGAAGCCAGAGAGGTTTTAGAGGACCTCCTGGAAAAGCCCCACCAAGTTGGAGAGATAATAACAGTGGACCCCAGCCATACCCCAAGAGGCCCTCGCTCATGGGTGAACGCAGAGAGCGGCCACATGGACCATGGATGCAGCACCAGGATAACTTCCATCCATATCCCAGCTCACAGGATTCACAGCGGGGCCGCAGGAGGCCTTCTCCACCTCGCTCAAGCCGCCCTCCCCCAGTCCAGCACAGGCAGTCCCCACATGGTCCTATACATGGACCCCCTAGCCACAGAGCACCACTTTTTCATGAAAACCACCCTAGCCACACATCTCCATCTCGCCATTTCCACGGCCCCCCAGACAGGAGGATTCCTTCCCCACATAGTTCCTTCAGGGGTCCACAGCGACGCCCAAGCCCTCAGGAACATGACAGGAGCTGGTGCCCCACTCCTCGGGATAGGCCCTTTGGCCGACCAGCACTTGGCGGGCACCACTGGAATGGCCCAGGAGGTTACCCTCACCCCCCTGGTGGGGATTCAAGGCTTTCTGGCCCACTCCAGAGAAAACCCAGAGAGTTTCATGGAAGGAATTCATATCCAGAGAGGTGGTCTGCAGAGAGAGATCATCGTGCGCCACATGGAGATCTTGGAAGGGAGTCCCGGCGACCTGGCATGGAATGGGCACATGGAGGAGGGGGAAGTCCACATACTCGGCCTCCTTACAGATCGCCAGCACGAAGACCAGGCCCGCCCCCATCTGGATCGTCACTTAGACCGTATCCTCCTTTTCGACCACAGGAAAGGCCCTTTGGACGGCCAATGAAGAGGAAGAGTCAAGAATTCAGAAGGCCACCATCATCAAGCGGTTTAGAGCATGGGCCACCAAAGCGTTTCTGCAGGGAGTTCTCAGTGAGACCTGTTCCTCTCAGGGGCTTTCGAGGTCGAGGTTTGTCGCTTCAAGATAAAAGCCGACTGATAAAGGCAAGGAGGTTTAGAGCGGAGTCAGTGGCCCGGTTCAAACTGCCTCCACCGAGGCCGAGAATCTCGGAGAGAGTCCAGAAGCCTAAGCCTCAGACTGCGCCAAAGAATGCCAAAGATTCCCCAGGAGTCTCACCACGCAAGTTACCACTCAAAAAGATGTCATCATCCAGAGAGTCGTCCCCCAACACAGACTCCAAGACTGCAGAACCTGAGAGGGACTCCGAAACAAAGGTGGAATCCCGTCGCTCTGTGAGCGCACACAGCTCTTCACCAATAGACAGACGACTTTCACGTGATCTTGTTGTGGTTTCTCATTGGGAGGCGGGGCACAAACCCAGTACTAGCCCTAAGAACAATACATCCTGGAGGAATAAGGCACCCAAGAGCAAATCTGAGGAATCAGAATCCCATGGAAATTTAACACTGAATGAACGCTTCACCAAGCTGCAGAGTCCTAACTCTTCACAGGAACAGAAAGAAAGACGGTCTTCTGTAAGTCCAGAAAAAACCCTGAGGAAGCCTGGATCATTTCAGAGGCCAAATTTTCGCCCAACTGCTTTAGTGAAGAGGGGTTCAGCCCCTGATGGAGTTACCAGGAAACCATTAATGGGCACATTAATTCCAAGACCGCCCTTCAATCAGAAGCCTGTCTTCAAGAAGAGTCAAAGTATCATGTCAAAGTACAAGAACCTGCAAACGTTGCGGCATAAAGTGCCTCATCAGCGTCAAGCTACTAGCTATCGCCGGTGGTAAGCCAAAATGATATGCTGAAGCAAGTCGTCCACTGCAAAGCCTCTCTATGAAGCTCCCCTCACCTTCGCTTATCTCCTTTGATCTAATCtgttgaaaaaaagagaaaatagcaaagtattatttttcatttatataagtTCCCAATCCCCCCCCTCCTTTGGTGTGCATTAGAGATAATGtctcattcttttcttttgtcttttttagaGTTTCAAAAACGGAGATTAGCatcacatttttgtatatacatttaaccTGTACAAAAGCTCTCTGTTTTTCCGGTATTTCgtgaaaatgatttttagatttggttaaattgtttttctttgaacATGTGGTTCTGTTTATACATCAGTGTCTGAATAGCTGCTTTTTGAAAGTGACTGTTAAAAGACTCATATCATGCGAAATGATACTTGTAAAATGCTGTATGATGAGTAACTTTCATTTGATGAAACAGTTTGGTTGAGCTTCATGTGTTGATTAAATGGCTTCCCTGAAAAATTGTTTGTGTAGCTCAAACACACATGTACATTCTTTGTAATCAGACACTTTGAATAAAACTGGAATTGTCAGATGTTCTCCGTTGAGTGAAGTCAAATACTTGAACTGTAAAATAGATCTGTTGGGTAGTCTGTTAGTCACGAAACCTACCAAACACTGTGACTCGTGTGATGTAGCCATGGTATCTCAGCAGTTCAATGTTGAATTCTTTCAAACTTATGTATTTCTGTCAACCAGCAGTGTGATACTGAATTTTCTGCAACAATTTTGTCCAATAAATGGGTGGCCAATCCA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU52135 lncRNA downstream 9611 10960311 ~ 10963602 (-) True slc25a15b
TU52137 lncRNA downstream 9611 10960311 ~ 10963602 (-) False slc25a15b
TU52130 lncRNA downstream 33727 10938695 ~ 10939486 (-) True G35388
TU52118 lncRNA downstream 39468 10932350 ~ 10933745 (-) True G35385
XR_006251094.1 lncRNA downstream 86475 10875648 ~ 10886738 (-) True LOC122346117
TU52162 lncRNA upstream 58764 11038690 ~ 11039232 (-) True G35410
TU52175 lncRNA upstream 81012 11060938 ~ 11062888 (-) True G35422
TU52176 lncRNA upstream 82974 11062900 ~ 11064447 (-) True G35423
TU52205 lncRNA upstream 122727 11102653 ~ 11124347 (-) True G35441
TU52234 lncRNA upstream 135084 11115010 ~ 11119227 (-) True G35467
XM_043239666.1 mRNA downstream 4095 10963601 ~ 10969118 (-) False slc25a15b
XM_043238337.1 mRNA downstream 15242 10953770 ~ 10957971 (-) True mpdu1a
XM_043239137.1 mRNA downstream 54720 10908898 ~ 10918493 (-) True atp6v1aa
XM_043239136.1 mRNA downstream 54812 10908898 ~ 10918401 (-) False atp6v1aa
XM_043240653.1 mRNA downstream 72939 10894152 ~ 10900274 (-) True zdhhc23a
XM_043239532.1 mRNA upstream 12815 10992741 ~ 11003177 (-) False tp53
XM_043239530.1 mRNA upstream 12815 10992741 ~ 11003177 (-) False tp53
XM_043239531.1 mRNA upstream 12816 10992742 ~ 11000365 (-) False tp53
XM_043239529.1 mRNA upstream 12816 10992742 ~ 11000363 (-) False tp53
XM_043239533.1 mRNA upstream 12817 10992743 ~ 10998127 (-) True tp53
TU52116 other downstream 47050 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 99149 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 511504 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 637871 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1570590 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 440029 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 483905 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 603854 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 821388 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 1185484 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile


XM_043239660.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_043239660.1 Expression in each Bioproject

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XM_043239660.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 800.
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