RNA id: XM_043239664.1


Basic Information

Item Value
RNA id XM_043239664.1
length 1892
RNA type mRNA
GC content 0.43
exon number 7
gene id mrps31
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10969502 ~ 10972314 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcccctggaccAGTTTATGAACTGTTTCCTTTTTATGTTGCAGTCCGATTTAATTATCCTAAAGTAATGTATGTGATACAGACAGACTAACATAAATAACATTACTGAATGTTCAAACACAGTTACAAACGAGACGTAAGTTGTCTTTTAGTCGTTGAAATAGGCGCCCGGAACCTTAATAGGTCTCAAGCAGGCGCCTGCCGGATGGTTGATTGAGCTGCACAGGGAAACGCGCATGGACGACATTGAGATCTTCTGAGAGGGGCAATCATGTATAGAAGattgttaaaaaacatttatcagattCGTAATGGATTAGTGCATGCGCAGAATGCACGATTACCTTTCACAAAATGTAAAGATGGGGACGGTTTTGCTCCTGTTATCTGgaCCCCATGTACAGCAAGGCCATTAGGAACCAGTAGCACCTCTTTTAGTGAAAATAATGAGAACTCCACATCCCTGTCAaaagacaaaggaaaaaaatcagaAGAGAATGAGGCGAAAGCAGAGGATAACACTGATGGAGAGAAGAGCACCGAAATTTCAACTAAAACATTGACCTCACAGGTAGAGACCGAACCAGAGGTTAAACCTGAGGACAGCAAACtggttaaaaagacaaaaagtggCAAGGAGAATCTTTTGGAGCTACTTGGGGCAATGAAGGTAGAGGTCACAACAGTACGCAAAGACAGATCCTCAACCGcttcacaaataaataagaagccCAAACATGAGCCCATGGAAAGTGCACACAGTATGTTCCAGCGTGCCACAGCTGAAGGGTTACAACAACATGGGACGTTGAATCCAGGGCTGGTTGCTGCAGTCTCTGCCGCTGCTTCCACACTGCCCAACAGACATCAGGCAGAGTCAGAGCTTCTCAAGCAGCTGAGGAAACACGAAGCCGTGCCTGACACCCAGAAGAGAGCAGATGGACAGAACATATTAAACACAATTGCCAAAATGAAGGTCAAAAAGAGGTCAAATGCCAGATCAAACCTTCAACCTACAAGCCAGATTTGTTTTGATGATGATGGAAAGGGATATACTGAAGACAGAGACATTAGCACTGAATTTGCAGTCAGcagagggaaaagtCTCGTCACTGGTAAGAGGTTGAACATCTTTACTGTAGGCATGGAGCAGGCATCAGAGCTGGGCCCTACTCTTTGGGACATTGAACTAGCTCATCAGATTGTTCAGGCAACAAATCAAGCGCCTCGAAATGGCTTTGAGGAGATGATCCAGTGGACCAAAGACGGCAAACTTTGGCAATATCCAATCAACAACGAGGCTGgCCTGGAGGAAGAGGCGAGTGTGCCTTTCCATGAGCATGTGTTCCTGGAGAAGCACCTTGAATCATTTCCCCAGCAGGGTCCAGTCAGGCACTTCATGGAGCTTGTAATCACAGGACTCTCTAAGAATCACCACCTCACCgttcaacagaaaaaagaacATATCGACTGGTTCAGAGACTACTTCCAACAGAAAGATGATGTCCTGCAAGAAGCAGAGGCATAACGATCACACAAAGACAGAAGAAGCTTTCGGAGTTCACTGTACTGAATACCCTACAGCCAACTAGTTCAGATCTTGACAGCAGTAGTAATTAGCAAACTCCATTAAGCACCTGGAAGTAATAATTGCATCAATTACCAGATTAAGAGGGTTCATCATTGATCTTGTTTAATGGTCCGCTGCGTCATAGTAATATTCAACCTGCTTCAAATTTTCAGGTTTTTGTTGCTTACTAAAACTTATTGTAACAGATGTTCAATAAAATCTGGATGTTGTGAATGCTGCTCATAATTCACTTTACTTGTTGCTTTTTCCACAAtacatgttgttccaaagcagTGTAAATAAAGAATAACTCCAATTTGCAA

Function

GO:

id name namespace
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K17410 MRPS31; small subunit ribosomal protein S31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51838 lncRNA upstream 131135 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 153201 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 421877 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 635694 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 639180 10329889 ~ 10330322 (+) True G35042
TU51912 lncRNA downstream 164738 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 164738 11137052 ~ 11147242 (+) True LOC122346180
TU51930 lncRNA downstream 214940 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 232186 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 234002 11206316 ~ 11208454 (+) True G35274
XM_043239667.1 mRNA upstream 5898 10960340 ~ 10963604 (+) True tm4sf21a
XM_043238332.1 mRNA upstream 21087 10946115 ~ 10948415 (+) True sox19a
XM_043239762.1 mRNA upstream 27859 10934545 ~ 10941643 (+) True eif4a1b
XM_043240924.1 mRNA upstream 35749 10926823 ~ 10933753 (+) True senp3a
XM_043239139.1 mRNA upstream 43472 10922870 ~ 10926030 (+) True plscr3a
XM_043238571.1 mRNA downstream 9273 10981587 ~ 10986048 (+) False capga
XM_043238570.1 mRNA downstream 9275 10981589 ~ 10986048 (+) True capga
XM_043239528.1 mRNA downstream 14591 10986905 ~ 10992885 (+) True si:ch211-114c12.5
XM_043238298.1 mRNA downstream 48007 11020321 ~ 11028005 (+) False pdha1a
XM_043238297.1 mRNA downstream 48023 11020337 ~ 11028005 (+) True pdha1a
XR_006251113.1 other upstream 36339 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 238450 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 851376 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1170144 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 2097984 8867513 ~ 8871518 (+) False man1b1b
XR_006251083.1 other downstream 74166 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 951914 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1276824 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1276824 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1541762 12514076 ~ 12516108 (+) False si:ch211-225b11.4

Expression Profile