RNA id: XM_043239671.1


Basic Information

Item Value
RNA id XM_043239671.1
length 6647
RNA type mRNA
GC content 0.43
exon number 23
gene id ophn1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13020346 ~ 13050778 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCGATGTGGGAGTATTCAGTATGTAGCCCTGCCCGCGTTTTGTCCCTCCGCTCCCAAAACAAGGAAAAGTATAGAAACACAAATACTTTCTTTATTCGGCACTTTTAAAATTTATAGCGCGACTGAAATAACACCGCGTGCACACGGAAGCAGCCACTACCGGAGCGCTGGATTATAGTTTTTACAACTGCATATCATCCAGTATGTCAAATATGGGGAACTTTATCGAAACCGATTCATAGATATCAACTTGATTAATAGAGCCGAGCGATCAAAAGGCAGGTCTGTCGCGGTTTGGATACTTTACTGACAACAAAAGACCGGTTCTCTTCATTGATCGGTCAGAGGGTGAGAATGGGGCATCCTCCGCTTGAGTTCAGCGACTGTTACTCCGACAGTCCAGATTTCAGAGAAAGATTGAAATGCTACGAAAACGAGCTGGAGAAAACCAACAAGTGCCTGAAGGATGTCATCAAGGACGGGAACAGCGTGATTAACACGATTAAAGAGTACTCACTAGCGGTGCAGAAGTTCTCTCAGACCCTTCAGTCGTTCCAGTTTGATTTCATTGGTGACTCTTTGACTGATGATGAGATGAACATTGCTGagtcatttcgagagtttgctgGTTTGCTGCAGGACGTGGAAGAGGGTCGAATGATGCTGGTACAGAATGCATGTGACTTGCTTATCAAACCATTGGAAAAGTTTAGGAAAGAGCAGATTGGGGTCACAAAAGAGAGACGAAAGAAATTTGAAAAGGAGAGTGAGAAGTATTACTCTCAGTTGGACAAACATATGACCCTGTCCTCaaagaaaaaagagacacagCTGCAAGAGgcTGACGAACAGTTAGATAAGGAGCGCCAGACATTTTATGAGTCGTCTGTTGAATATGTGTACCAGATCCAGCAGGTCCAGGACAGGAAGAAGTTTGATGTTGTGGAACCTaCGCGTAACAACTTTGAGAGCACTAGAGAGGAGATGGAAGAGCTGATGAAGAGGATGAAGGGGTCCGCACAGATCTGTATTAGACATGGCCAGCAGGCGACTATGGAGGGATACCTTTATGTGCAGGAAAAATGGGCGCTTGGCGTAAGCTGGGTGAAGTATTACTGTAAATACTTCAAAGACAGCAAGTTATTCATCATGGTGCCAGTGGAACAAAAGACGGGAACCAAACAGACTACATCTCAGCTCACGTTGAAGTCCTGCGTGCGCCGTAAAACAGACTCCACTGATAAACGCTTCTGCTTCGACATTGAAACAAATGAAAGGTGCAGCCCTGTCCTGCTTCAGGCTATCTCTGAGGTCAACAGGAAGCAGTGGATGGAGGCCATGGATGGAAAAGAACCAATTTATCACTCTCCGATTCAAAAGCAGGCAGAGAtGGAGCTAAATGACCGTGGCTTCAAGTTCGTCAGAAGATGCATAAATTTTGTGGAAACAAAAGGGCTGACTCAGGAAGGAGTCTACAGGACTGTGGGCAGCAACATTCAAGTACAGAAACTTCTTAATGCCTTCTTTGACCAAAAGTGTCCAGCTGATGTAGATTTCAATTCCAATGACATGGACATTAAGACCATCACTAGTGCTTTGAAATTCTATCTGCGGAGTCTGAGTGAACCACTGATGACCTACAGTTTGCACGGAGAACTGATCTTAGCAGCAAAGTCGGAGAATCTGGACTATCGGTTAGGGGCGGTTCACTCGCTTGTTTACAAACTCCCAGAGCGGAACAGAGAGATGCTGGAACTGCTAATCAAACACCTGGTCAgtgtttgcaGTCACAGCAGTGAAAATCTCATGACCGTGTCAAATATGGGTGTAATATTTGGCCCCACTCTTATGAGAGCTGAGGAGGAGACTGTAGCGGCCATGCTGGATATTAAGTTCCAGAACATCGTCATGGAGATCCTCATTGAGGACTACAGCAAGATCTTTAAGGGTCCTCCTGAGGAAACCACGCCGCCTCCTATCCCACCTCCAAGGGTGACACCACGAAGAAGGCAGCCAATCACAATCTCAAAACGCCCACCCCGGCTCTACCCCGGCCTTCAGCCTCCAGTTTTTGAGCGGCGAGAGCAAAATGGTGCAACCCACAATGACGGTGAACCCGAGGGAGACACCGGTCTCACCAGTCCGGTTCCTCATCAGAGAACAAAACTGGCACCTCCTTCCATCTCTCCTCCATCAATCCCGCTCTCCTCTCCGATATCTCGGAAGCCTGCTCAACCCAGAGCTGCTCTCCGGCCCTTGGATTCGGACATCAGCAGGGTTGAAGCTAGGCTACAGGATGGCCAGAGGACAGACGCCATGGTGGCGACCAATGGGGAATCGGGAGTGACAGTGAACCGAGTTCAATCTTTCCAAGGGAAGGGGCCACTACTCAGAGGAACAGCTGGAGAGGCTCAGGGGCTGAAAGGACGGTCTTTCTCAGAGAAGAGTTCCATCTGTCGGCCACCCACTCGACCACCAGATCCACCCTCTCGTCTCCTCAATAAAACATCTAATGAAGACACTCCAGCATCGTATGTCGCCTCCAAAACCAAATTTTTTGAGAACGCTTCCAGGCAGATGGGAAGCTCCTCTCCGAACGCCTCACCTGCAGCTACTAAAGATGAGAACACTAAATAAGAACATCCTTCCAGTCACTCCTACAACTTGTGAATCAGTGTCTTGTGgaccaattaattaattttttttttggcgtgtgtgtttgattgagTTGTCAagggggctttttttttttttggcgccAGTTTTTTTGCACTTGCTTACTTTGCCGTAAAACTAAGTCTTTGATTCTTGCCTGGATCAAAGATCAAAAAGAAAGCATTgaatccttttttctttcttaaacatGCTGACCTTCCTGCGCACAACAGGGAAAACTCCCACTTGTTCTCACTCATTGTGTCTCTCAGTATCTCCCTTTTCTGTGAACTATTTAATAGAGCGATAAGACTTAGGGTTTTACTGTCTCACTCTACAGACGCACTACAGACTTCACTTTAAGAGCGACAGAAGGTGGAACAGCCCAGttgaattatataatattctGAATCAACACTAATCAGTATTTAATTACGCAAGAGCTGAACATCCTTCTATTAATTATCTGTTATTATCTCAGTAATTAGTAACTGGAAGGAGATGAATGACCTGGGTCCTGGTTCTGAATGTTTTTGACAAGCGGAATAGTTACTGTAATTTGCAACGTGTTTCTCCTTTTATCTGCTGGGACACGATAGCGGTTTtcccaagaaaaaaaaaaaactaaaaagggATTGAGGAACTTTTGTTACTTCAGCTAGTTCATAGAGCAAAGTATGCTTCAGTAagcttttctctccatctctcttgccctttttctttttaaattatcagCCGACCTTACTGATATAGAGATCAGTTTCGTTATTGAGCTTAACCAGACTTTTAAGTCTCAAACTTTGACTGAAACACGAGCCTTTATCGGTTTCTTTGGTCAGTGTGAATCTTAAATGTGAAAGCTAAAGATTTCGTCTCTTTCTCACTTTCACATAACTGTAAATGtggaaataagaaaaaagaataCATGTCAATAGGTTTTTGTAACTTAAAGTTGAAATTTTAGGTCATGTTTTGCGGATTTGGCATGAACTCAGTTTTGATTTGAAGCAGACTGGAGCGCATTCctaggtattattattattattatcataaagtTCCAAATTTCTAGTTGccgttttatgtattttttgtaaatattttgttgtttcttAAGCCGTTTGTTAAGCTCTTAACACCTAACAGTCACTAAaccgtgtttttgtttttgtttgaacgTACTGCTGcaagaaaatgcaaatttattaaaaaaaaaaaaaaaaagatgacgtgtgtttgttttgttcctaTTAAGGAGCCATAGGTAAAAGTGCACTGAGCCAACCCAGGGTAGACTAAATCCATACAATGAAATGACCTCATGAtagatagaaataaataaatgatgggAAGGAGAGCAGACCTCTGAAATctagttaaattaaaacagctGTGCATCAGTCAAAAtccaaagtgcaaaaaaaaccaaaaaacaagtcACGGCCTGAAGAGGTTAAGCAATTTTCCACCACAGAAATGCTTCTCATGCCCAGTTGCTTTTGCGTGATATTGCTTAGGTCCGACTGAGGGTGTGTCTCATGAAAAAAATAGCAGAGAACATCTTcaagattttcaaatgttttttattattattattattgttgaattGAAAGCTGTAAAACACAAACGAACCCGATTTACACAGGCATTACACAACAGGAATCAGATAAGCGATTTTCCATACGAGTAGAAATCGGTTCTCAAACTGCTCGAAAGAAATCGTCAGATAACAACTGTCAATACAACACTACATATCAGTACTAAATAATCTGCGAAAAAGCGtgcatgcacagacacacacacacacacacacacacactcacgcaacTGCTGTAAAAAAAGACTAGAAAGTTACAAAGATTTAAGTAACAAACATCATTTAAGAAGCCAGAATTTCCTCTTCTAGTCATATAAAGCCAAACTATCTAGCTCCTCCTTCTGCATATGGAAAAGCGAAAAATATCCCATAACACCAGGAAAAGACAGGAATTATTCACACCAGagaaaaagctgtaaaaaagCATTCGCCAATGATTAGTCGTGTAATTGCTCGTATCAGCCAGCGAAGGGTTCAAAAATCATGTCATTGTTACATATATGGGAGTTTACAAAGCTgaaacaggacagaaaatagACACAGCTGAGCCTGCAAACGATTCATATGGATGCATTAGCACATTGAGTGTCTGTAAACCAGTGTGGCGCTCTCAGTTTAACATACAACTTTATGTCAAGATGCTTCGCAGTAATACACACATTAGAAAGCGTGAGAAATTACTTCCCTCATTGCTGGGGAAAATATATCAGTGAGACATTGTTCGGCAAGATTTTTGCACTGAAAGACCAATTTATAACCACAGGAAGCATCCCAGTGACATGCAGACTGTTATTAAGACTCCAGGTTTTCTTGTTCGTGTGAGAGCACAAACATTAGTAGGATCcaagcaaacttttttttttttttttttcttttttttttcttttttttttaaaacgcagGCCAAATTCAATATTTAGCAAAAGACCCCAAAAATGTCTTATTGCTTTCTTCCCTGTTTGCTCCTTTGAGGGCAGCTAAGCAGAGGCCGCTAACAGATTTACAAGAGcgcatataaacacacacacatatgctttTGCTATTGGTTGaccacactgcacacacacagtaacagtAAATCCTAAGACTTTAATTGAAAACCAACACGCAACGTTCTACATCGTAGGCTCATAAGAGACGTGTTAAGAAAGTCACAAATCTGCGTATGGATCATCCAAGCGAGAGTCGGTCTCGCGAGCGCGGCGCGAGCCGAGAGAGGTGTTACGTCAGAGTGTCGCTAACTGACGTATTACAAACGTTTCATTGTAAACAGACAATTATAAGACAGCGTCTCTGGCAAAGGCGAGTGTGAATGGACTACGTCGGTGTTTACATGCAAGTGCCCCCTCCGAAAGTCCGCCGGGTAAGGAACGGCTTTGTGTTCAGACCTTGGCTTCGGCTCTGTCCTAAAGCGTTACATGTTTGTGGTGAAAGTCATGAGttcttttttttggcaaggtaaaAGTGCAGTTTGGAGTTCTGCAAATTCTAATGAGCGCTTTTGGGCCATCTAAATGGGTAAACACCTGCGTGTAATTGCGCGGTGCTCGGTGCTGTCAGCGCAGAGGAGCTGTCTCTGACAGCCTATTCTCTGCCTGGCACATTTAAACCGTCAACATGCTCCGCGGCGACAAGAGCTCGAGCAGCTAAACCGCATCTCGTCGTTTTAACTCGGCGGAAAACTCCCTGCTCTGCCGAAAGTACACCCCAGGTCACCCCAGGCCTGACAAAGACAACACAGTGCCGCAATTTTGGGGGCTCTTTAAAGAGTAATCTACATACATAACGCTGCAAGCATTATTCAATCATTTAGAAACGGATAGCATGAGGAGGAAAAAAGTTGACAAGACGTCTAGAAAAACGCGCTGCACCGGAGTATGAGGAAAGCGAGTAAAGATGTTCCTTTCTGACAGATAAATACAGAATGCTTTAATTGAAGCGAAAgcggttttaaaaaaaaatacatatgccgtgtttttttgtcttttgtttagaGCAagagttcagccaaaaatgattaTCTGTCATCATTAACTCAACCTCAAGTTCTCCCAAACCTGTAAGAGTTTCTTTATTGAAGActtgagatattttgaagaacgctGGTCACCAAACAGCAAGCGGtaggtttttttccccattctgTGCAAGTCAGTGGCCACCAGaaagttttaattttcttttgtgtcCAACAAAAGAAATAACGCGTAGTCTGCAGGTTTGGGAGAACTTGGGTAAATGACAGTTCTCATTTTTGTGTGTACTGTCCTGTTTACACCCTCGTAAATAAAGAGGAGAGCTTTAGCACCGCTTGTCGTTGATGATGATTAAGATATTTGGTACGAGTTTCTGATAAAATAACAGTACTGCCCTGTGTTAGAACATAGgcatagctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53076 lncRNA downstream 86567 12933471 ~ 12933779 (-) True G36012
TU53073 lncRNA downstream 93884 12924743 ~ 12926462 (-) True G36009
TU53068 lncRNA downstream 103532 12913626 ~ 12916814 (-) False G36004
TU53066 lncRNA downstream 104333 12913626 ~ 12916013 (-) True G36004
XR_006251055.1 lncRNA downstream 136189 12880061 ~ 12884157 (-) True LOC122345905
TU53124 lncRNA upstream 3355 13054133 ~ 13054857 (-) False G36047
TU53126 lncRNA upstream 4791 13055569 ~ 13056705 (-) True G36048
TU53144 lncRNA upstream 57921 13108699 ~ 13108948 (-) True G36063
TU53200 lncRNA upstream 266457 13317235 ~ 13317462 (-) True G36104
TU53204 lncRNA upstream 272153 13322931 ~ 13323222 (-) True G36108
XM_043240166.1 mRNA downstream 65501 12943325 ~ 12954845 (-) True eda2r
XM_043239055.1 mRNA downstream 108583 12894584 ~ 12911763 (-) False ttc33
XM_043239056.1 mRNA downstream 108602 12894584 ~ 12911744 (-) False ttc33
XM_043239054.1 mRNA downstream 108602 12894584 ~ 12911744 (-) True ttc33
XM_043240130.1 mRNA downstream 156648 12844251 ~ 12863698 (-) True map1b
XM_043238349.1 mRNA upstream 67589 13118367 ~ 13150538 (-) True rxfp2l
XM_043239540.1 mRNA upstream 219624 13270402 ~ 13303696 (-) True efnb1
XM_043240077.1 mRNA upstream 337234 13388012 ~ 13391957 (-) False zgc:158432
XM_043240076.1 mRNA upstream 337234 13388012 ~ 13391957 (-) True zgc:158432
XM_043239924.1 mRNA upstream 341878 13392656 ~ 13407947 (-) False taf1
TU52956 other downstream 514388 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 700661 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 851019 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 1204536 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 1367719 11583780 ~ 11652627 (-) True G35554
TU53125 other upstream 3066 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 324851 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 528283 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 608299 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 609196 13659974 ~ 13699226 (-) False lrch2

Expression Profile