RNA id: XM_043239673.1


Basic Information

Item Value
RNA id XM_043239673.1
length 3548
RNA type mRNA
GC content 0.48
exon number 17
gene id trpv4
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5820352 ~ 5842997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATAACGGTATGACATGTCGTATGTTCTCAAgggtttaaaaatatatatatttttgctaatATTACAGTTGTTTGCGAGATGgtgaatattttgtttgtttacaaagCTTTCAAAGTCAAAATGGTGAGAGTTTAGACTGCGAGGATTTTGTTTGGTTGACACGTAAAACCATCCTTTCCTCTTACGTCTAACGCCGGGACTCTGAAGAGCTCCACACCCCTaagttcattcattttcagtggGCGGTGGGAAATCAAAACCACTTCTGCGGTCCTTCGACGTGAAACACACGGGAGCAGAGATGTCGACGTATCCAAAGTTCACCCGAAGAGCTGCACGAACCCCACCTGAGGAATAAATGGACGAATCTGAGCTCGCAAACGGAATAAATACAGACTCTACGTACGTAGCGGCGCATTTGTTTTTACAGGTCTGTCTGTGTCCCTGCAGACACTTCCTGACACTTCCCAGCCCCCCGGAGGAGTAATTTGGCATTGAGGAAGTGCACACAGCATACAAAGAAATGACTGAAGGTTTCTCCGCTTCCACTCTACTAAAGCGTTATCGTCTGGCCACGACAGAGTCAAACTCAGTCTCCTCACCATCAGGGACTGCCGCTGAGGACCTTTCAGAGAGCAAGGATATTTCAGCAGACGGGGATCCCAACTTCCCCATGTCTTCACTGGCAGAACTTCTGGAGAATGATGATGGGTCACAGCCAGCCCAGGATTCAGCTCGACCTGGACACCATAATGATAACAAGCAGAACTTGCGAATAAGGTTCCCAGGGGCCTTTAAAAAGGGAGTTCCTAACCCCATGGACCTTCTTGAGTCCACCATGTCTGAGTATCCAGTGGCACCTGGGCCGAAAAAAGCACCTATGGACTCCCTGTTTGACTACGGCACATGTAGAGAGATCAACAACCAGAAAAAACGCAGGAAGAAACTTCCACGAGGGAAGGCCGAGATTGAGATGTCATGCGACGAGGGGTCCCCGGAGCCCACTGTTCTTAAAGTCTTCAACCGCTGGCTGCTGTTCGAAGCCGTATCTCGAGCAGATAGAAGAGCTCTGGATGGTCTTCTGCAGTATCTTCAGTCAAATGAAAAGAGACTGACAGACGAGGAGTTCAAAGAGCCTTCTACAGGGAAGACTTGCCTACCAAAAGCCCTTCTGAACCTGCACGGCGGTCACAACGACACCATCCCTGCGTTGATGGACATCGCCGAACAGACCGGAAACCTCAGAGAGTTCATCAACACTCCCTTCAGAGATGTTTACTACAGGGGTCAGACTGCGCTGCATATCGCCATAGAACGACGATGCAAACAATACGTGGAGCTTCTGGTGGAGAAGGGGGCTGACGTTCACGCTCAGGCCAGGGGACGATTCTTTCAGCCCAGAGAGGAGGGTGGATACTTCTACTTTGGTGAgctgcctctctctctcgccgctTGTACCAACCAACCAGACATGGTGCACTACCTGACCGAGAACAGCCACAAGGCGGCGGATCTGCGGAGGCAGGACTCGCGGGGAAACACAGTCCTGCACGCCCTGGTCCATATCGCTGACAACACCCGGGACAACACGCGCTTCGTCACTAAGATGTACGACTTGCTGCTCATTAAATGCGCCAAACTCTACCCAGACTGCAACTTGGAGAATGTTGTCAACAATGATAGCATGTCCCCTCTCATGATGGCCGCCAAGCTGGGCAAAATTGGGGTGTTCCAGCACATCATCCGGAGAGAGATAAAAGACGAGGAGGCTCGGCATCTTTCCCGGAAATTTAAGGACTGGGCTTACGGACCTGTATACTCCAACCTGTATGATCTATCGTCACTGGATACCTGCGGAGAGGAAGTCTCTGTTCTGGAGATACTCGTCTACAACAGCAGGATTGAGAATCGCCATGAGATGTTGGCGGTGGAACCCATAAACGAGCTGCTGAGGGCCAAGTGGCAGAAGTTTGCCGCTGTGACTTTCTACATCAGCGTCTTTTCCTACCTTGCCACCATGATCATCTTCACTCTCGTGGCCTACTATCGGCCGTCCACGGGTACACCTCCTTACGCCTACAACTCTACAGAAGACAAGGTGCGCTTGGCGGGCGAGATCATAACCGTGGCTTCCGGGGTCTTCTTCTTCGCAACAAATATTAAGGACCTTTTCCTGAAGAAGTGCCCGGGGGTgaattctttatttattgatggATCCTTTCAACTTCTCTACTTCATCTACTCCTTGTTGGTGCTGGTGAGTGCAGCGCTGTATCTGTCCGGGATCGAGGCCTACGTGTCTGTGATGGTGTTCGCTCTAGCATTAGGTTGGATGAACACCCTGTATTTCACCAGAGGCCTTAAACTCACTGGAACTTACAGCATCATGATTCAGAAGATCCTCATCAAAGATTTGTTCCGTTTCCTGCTGGTCTACGTGCTCTTCATGATAGGCTACGCGTCAGCTTTAGTGTCACTGCTGAAAATCTGCCCCGAAAAGAGCGAATGCAACGGTACCTGCCCCGTATACCCGGAGTGCAGAGACACAAACACCTTCAGCGAATTCCTGCTGGACCTGTTTAAGCTGACCATAGGCATCGGAGAGCTGGACGACATGTTAAAAGGCGCGCAGTATCCCGTCGTCTTCCTCGTTCTCCTGGTCACCTACATTATTCTCACCTTCGTCCTGTTACTCAACATGTTAATTGCTTTGATGGGGGAGACAGTGGGACAGGTGTCCAAAGAGAGCAAGCAGATCTGGAAACTGCAGTGGGCAACGACTATCCTGGACATCGAGCGGTCCTTCCCCGTGTGTCTGCGGAAGTCTTTCCGCGTTGGAGAGATGGTTACTGTGGGCAAGGGCTTGGATGGGACGCCAGACAAACGCTGGTGCTTCAGAGTGGACGAGGTCAAGTGGTCCCACTGGAATCAAAACCTGGGGATCATAAATGAGGATCCAGGCCAGAAAGAGCATTACGAGCAGACGCAGGGCGGACGGGGCCTTCGAAGAGATCGCTGGTCCACTGTCGTCCCAAGAGTGGTGGAGCTGAACAGGGGCTCCAGAGACCATACCGTAGAGATGGAGCCTCTCACGGGCAGACACAGACACAAGTCTGAAAGCTAAAGAGGGTCAAagttatgtattttataaaagctgacaataattttagttttttttttttataaatcacaaTTGGGAGAACGGCTCCGATATTatgacttttatatatatatatgtatatttggaCCCATGAGACACTCAGGAacatatttgatgtttattattgtagtgtttttttatcatGGAGGGTgcaatagattttttaaaaatttttattattttgattaaaaaaaaaaacaacgctTCACAAGGACTCGGATCGGAGTATCAGCGTCTGTCTGCTGTCTGATTCctgctgacatttttttttttgtggattatGTGGAAAGgtaatattttaatcaatgaTAATGTCAGATTACCTCAGTGTTAAATGTGCCTTGTGATAAAGtacagttcctttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49258 lncRNA downstream 136068 5679683 ~ 5684284 (-) True G33446
TU49238 lncRNA downstream 165588 5654080 ~ 5654764 (-) True G33434
TU49227 lncRNA downstream 199647 5618265 ~ 5620705 (-) True G33423
TU49226 lncRNA downstream 199647 5619617 ~ 5620705 (-) False G33423
TU49210 lncRNA downstream 218148 5601409 ~ 5602204 (-) True G33409
TU49417 lncRNA upstream 53131 5896128 ~ 5897353 (-) True G33533
TU49427 lncRNA upstream 102992 5945989 ~ 5946874 (-) True G33542
TU49429 lncRNA upstream 110279 5953276 ~ 5959213 (-) True G33544
TU49440 lncRNA upstream 126245 5969242 ~ 5982803 (-) False G33549
TU49443 lncRNA upstream 127751 5970748 ~ 5982803 (-) False G33549
XM_043238430.1 mRNA downstream 149223 5668793 ~ 5671129 (-) True mmab
XM_043238673.1 mRNA downstream 167323 5648255 ~ 5653029 (-) True kctd10
XM_043238672.1 mRNA downstream 191066 5621069 ~ 5629286 (-) True foxn4
XM_043238959.1 mRNA downstream 365596 5435977 ~ 5454756 (-) True LOC122345133
XM_043240923.1 mRNA upstream 681 5843678 ~ 5849639 (-) True gltpa
XM_043240904.1 mRNA upstream 16282 5859279 ~ 5884164 (-) True git2a
XM_043238326.1 mRNA upstream 55898 5898895 ~ 5909991 (-) True slc6a4b
XM_043238540.1 mRNA upstream 243804 6086801 ~ 6089556 (-) True foxd1
XM_043239784.1 mRNA upstream 253160 6096157 ~ 6099701 (-) False ankra2
XR_006251120.1 other downstream 388958 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1197294 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1627271 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 113302 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 981174 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1080433 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1087875 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1278725 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile