RNA id: XM_043239679.1


Basic Information

Item Value
RNA id XM_043239679.1
length 3169
RNA type mRNA
GC content 0.47
exon number 17
gene id emid1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10552975 ~ 10608867 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

accctacacgGGCTGTGGGACTCAAGGCGACTATAAAACAGCTTTCTTGCCCATTGTGTTGATGTAGTCAAGAAATATACCGTAACGCACAGACAGAGTCAGAGATGGAGGAGTGAGGCGGGACCGGTTTGGGTGGCTGCTAAGAAACGTTTGTCTTGCGGTTTGCGAGCAAACTTTGTGAGGAGATTTATTTGTGGCGGGGTCTGCCGATGACAGTCTTCCGAAACTTTAACTCTCGTGTTTGAGACGCAACAGTGCACATAAACAagacttttattatttgaatgctCGTAAGAGAAGCGGCAGTTCAGAAAAATAGTCGTATATCAGTGCCCTAGCCGCAGTTTGAACATAAGCGGGACAGTGTTAGGAGAGGTAGCTATTTTGCTGACTAGGGTCTCCGTGTAGTTGACGCGGCTGAAATGGGAGCGGGTGACGGGCGCTCGGTGTCTGCGGTTCACCGGAGCTCTTTTCTCCTGAGGACGCCGCTGCTGCTGATGATACTGGGGCTGACTTGCGTTCAGGGGACGTGGGGACCCGGAGTTTACAAATACCAGACCGGGACAGCTCTCCACAAAGATCAGCCGAAGAGGAACTGGTGTCCGCAGACAGTGACTAAGACGGTGACCTGTCAGGTGCAGAATGGCACCACTCTCCAGAGGGTCTATCAGACCTGCAGGTGGCCTCAGGGATGCAACGGAGGAAGCTATCGCACCGTGGTCCGGCCATCCTATAAAGTTGTGTACCGCACCATCACCTCTTTAGAATGGAAATGTTGTCCTGGATACAGTGGACCTCAGTGTGAGGAAGGATCATCAAGTAACCTGGTTGCCCAGGAGGCTGTAAGAAAACAGGCTACACTTCTGAAACCTGCTTCTAAAACAGGAGAACATATCTCAAactgTCTGAACTGCAGTCGTATCACTGCCCTCACAGATCGTGTGAGCTCTCTGGAGGCCAAGGTTCAGCTTCTTACCGCTCCTGCCTCCAACTCTCATCGACAGACGCAGATAAAAAATGAACCTGACTCCTCCTTGCTAATGGGGGCTCCACCTGCCAAAGGTTCTCCTGGGGCTCAGGGTCCCGCAGGTCCACAGGGTGAGAAAGGCCGGGATGGCTTACCCGGTAAAGACGGTAAAACAGGGTCTCGGGGTCTGCCAGGACCCAAAGGGGACGCAGGCAGCAGAGGTCCATCTGGGGTTCCAGGGTCTAAAGGAACAGCTGGTCCACCAGGTCCTCAGGGACCACCGGGCCTCCCGGGAGAGAGGGGCCTCCCTGGGCCACCTGGGCCCCCCGGACCACCAGCCCCTGTACCTGAGCAAGATGGCCTGAAAAAAGATGGTCTGCTTCATAATAACTTCCCCGACCTCAGAGTGACACCTTCACACGGACCACCAGGTCCACCTGGGCCCACCGGTCCTCCAGGACCGATAGGACCCAGTGGACCACCGGGCCCTATTGGACAAACTGGAAAACCGGGAGCTCCTGGTGTGCAAGGCCCCGTTGGAGCAAAAGGCGACCGAGGCGAAAGAGGACCTCTTGGATATCCAGGAGAGAGAGGGTTCAAAGGAGAGCCGGGAGTGCCAGGACCTAAAGGAGAGCCAGGGGAGAAAGGTCTTCCGAGCGAATTGAACGGGGATGGGATACACCAAATCCGCGAGGCCCTGAAGATCTTAGCCGAGAGGGTTTTAATCCTCGAGACTATGATCGGTATCCATGAACCAGATCTAGGGTCAGGAGATGGCCTCTTTGGCACACCGTCCCCAGATGTCTACCGGATTAAGAGGGCAAGAATGTCATCTTTCCGAGTCAATTCTCCTTTAATCACTGCTGAGACCAAGGTTCGAGGGAAGTAGTCTGCATATTCCAAAGAGCGAAGCCATCATTTCCATCTCAATCTGACCATCAATAAATCAGCCGAACTGGAAACAACTACGCGAGTCTCctgagatacacacacacacacacacacacacacacacacatcctacAGATCCGACCGCTTTGGAATATTCCAGTTAGTCACGAAGGAGGAGACACCTCAGGGAAGACCAAATGGTGCTGTATTAATTAACCACCTCTAATGGCACTCGCAGGTTCCTAGCACCTCTCCTCTGGCAAATGAATGTGGTTTGCCATTATGTTGTGTCACTCTTATGACATAACCGAATAAATTCATCAACTCGTTTCacgtgaaaaagaaaaaacatggaTTTAAAATACGATGCATTGGTGCTTGTATAATTGTTTAACAAAACTGCGGGCAAAAAAGGGTACAAAATGTCATGGAGATgaagaacgttttttttttaagagagcATCAAAACATATTATTAGTCTTTCCAGCTGCTGTTAGGAGCTCACAACTTCAGCAAATGTACTGTATGACGAAATGCACATAACAATTCTGCTATTCAGCCAAACGCCACACTTTCCTCAATGATAAAAACTGATTTCATATTCCGTTCCTTGGATTAAATGCACTATGTAGATAGAGAATCaccttgttttttgtttattttttaaagagaaagacaacTGAAGGACATAAacatgtattaattttaatagaCAGTTCTGCGGTAATAGGCTTTGGGATTGGGTTTCCTCTCTTTGTTCAAACAGCTGTAACTAAATTTGAATtagtgaaaatgtgtttttaaaatatcttgttCAAACATGCCTTCGGAAATGATTTCAAGTGGTTCCAAATCCAATTTTTGTATTCTCCTCTAGCTCAGGACAACAATTATTaagtaaccgtaaaataaataagataaaaatgtgCAACTGTACGAGCTAGAGGAGCTAAACCCATAACCCACACAAAATCCAACTGGAGCACAAGGGGAAGCGGGAAAACTACTCATATAACTTGAATtctgttttttgtgtttcatgcaTGTCTTTCCATCACAGTTACATGCACATGCATAGGACTGGTTTCCTTCCTCGATACCTTTCCATGTCTTTGTATtcctatataaatattgttgtattaattatttatagatGACTATTAGAAATTGATGTTTTCTCTACTCTGTATAGCAATTCATGTAACGTTGCctgtattttttccatttctagCCTCGTGTGAATTTGTCTTGCCAGTGTGCGGTCTTACCAATTGGTGTTAAAACGAAATAAactttgttgtgtgtttcta

Function

GO: NA

KEGG:

id description
K24248 EMID1; EMI domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51689 lncRNA upstream 5351 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 219168 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 222654 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 225515 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 226262 10325866 ~ 10326714 (+) True G35040
TU51833 lncRNA downstream 204590 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 229145 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 336189 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 528185 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 528185 11137052 ~ 11147242 (+) True LOC122346180
XM_043239815.1 mRNA upstream 6043 10533187 ~ 10546933 (+) True pnpla7b
XM_043239817.1 mRNA upstream 21896 10527090 ~ 10531080 (+) False dph7
XM_043239816.1 mRNA upstream 21896 10527092 ~ 10531080 (+) True dph7
XM_043239818.1 mRNA upstream 21896 10527475 ~ 10531080 (+) False dph7
XM_043239811.1 mRNA upstream 28186 10469676 ~ 10524790 (+) False abca2
XM_043239678.1 mRNA downstream 2707 10611574 ~ 10619892 (+) True ewsr1b
XM_043239677.1 mRNA downstream 12790 10621657 ~ 10647143 (+) True gas2l1
XM_043239222.1 mRNA downstream 38726 10647593 ~ 10672570 (+) False ap1b1
XM_043239224.1 mRNA downstream 38748 10647615 ~ 10672570 (+) False ap1b1
XM_043239225.1 mRNA downstream 38748 10647615 ~ 10672570 (+) False ap1b1
TU51450 other upstream 434850 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 753618 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1681458 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2248825 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2542377 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 120251 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 317956 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 437613 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1315361 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1640271 12249138 ~ 12255672 (+) True G35720

Expression Profile