RNA id: XM_043239690.1


Basic Information

Item Value
RNA id XM_043239690.1
length 2851
RNA type mRNA
GC content 0.40
exon number 13
gene id erlin2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12916170 ~ 12926498 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGCTACAGGCAACGTTTTTAATTGCTCATTGGTAAGCGCCAACCCTGTTTTTATACAGGAAGATATCTGTCGCCATCTAACGGTAGGATGCTCTAACAGCAGCGGAAAAGTGGGTTAAACCCGTCGTGACGTCAGACGCAAAAGAGCGTCGCTGTATTTTCCTCATCGGTCTCAGGTGTCTCTAACCGGCAATCAGGAAGGAGTTACAGTACGTACTTAGctgtttggtctcattctgacggcacccattcactgcacaggaGGTTCCAGTGTTGAAATGACATTGGGAGCAGTTGCCTCTGTGATCCTAGCCATAGGAGGAGCTGCAGTGTTTTCTGCTCTTCATAAGATTGAAGAGGGACATGTGGGTGTTTACTACAGaGGTGGAGCTCTGCTGACCTCCACCAGTGGCCCTGGCTTTCATCTGATGCTGCCTTTTATTACTACATTCAAGTCTGTACAGacaacgCTGCAAACAGATGAAGTAAAGAATGTTCCATGTGGCACAAGtGGAGGCGTAATGATCTACTTTGATCGCATTGAGGTGGTAAACTACCTTGTTCCCACAGCagTTTATGGCATTGTGAGAAACTTCACTGCAGACTACGACAAAGCTCTGATTTTCAACAAGGTGCACCATGAGCTGAATCAGTTCTGTAGTGTGCACACACTTCAGGAGGTCTACATAGGTCTATTTGATCAAATAGATGAGAATCTTAAGCTCACACTGCAGGAGGATCTAAACGGCATGGCCCCCGGACTCATCATTCAGGCGGTCCGTGTCACCAAACCAAACATTCCAGAAAGCATTCGCAGGAACTATGAACTAATgGAGAGCGAGAGAACAAAGTTACTGATTGCAGCTCAGACTCAGAAGGTTGTAGAGAAGGAGGCAGAAACGGAGAGGAAAAAGGCTGTGATTGAGGCAGAGAAGGTGGCTCAGGtggctgaaataaaatttgGCCAGAAAGTTAtggaaaaagaaacagagaaaaagatCTCCGAAATTGAAGACAGCGCTTTCCTTGCTAGACAGAAAGCAAAAGCAGATGCAGAGTTTTACACCGCACAGAGAGCAGCCGAGGCCAATAAGCTAAAACTGACCCCTGAATATCTCACGTTGATGAAATTTAAGGCAATAGCGGCTAATAGTAAGATTTACTTTGGAAGTGAGATCCCGCACATGTTCATGGACACGGGACCAGGAGGCTCCTCCTCGGCTGCTTCCAAAGCCATAGACGCCCTCTCGGAGGGCATACTGGACTTGGAATGACGACAGATGTTGCATTGTAGCATTGAGGATAAATTAACAGGTAATAAAGGAGACTAATGGTAAGTCCTTAGGTGTGTTGGTACAGTCAGTGCAGATGAAACAGCTAGTGAAGTGAAACGGTGCTGTACCAGTTGGACACTATACCTACAATTATACCCTGTTGAGTTGATCACAAGCCAGTGGTGGATAACTAGAGAATTACACTATTAAATAGAACAGAGTGTGGGAATGTGAAATCGGATGTACTGTAAGATTAGAACCTGCTTTGTgcatgatttaaatgttttaagatgCGTTGAGTTTGAAAACTAAAGaggcattcatttttttttttttttacattgtggaTTTTGACTGATCTACATTCAAAGACTTTTGTACCTCAGGGATTCTCTTGTTGGGTTTACAAAATTAAACACAGAATACATGCTAGATTAGGATTGTGTTCTTAACTATGTTGACATTTGAATTTTTACTGACTGAGCTGACTGTTCTTGTTTTTCGACCAAGCTGTAAAAAATTCAAAACGTATGGcaacaaaattatgaaaactttcctaattaaactattaactaaaatatttcgAGAGGTAACAGTTTATAGTCATGAAAATCCTGCAAAATCATCTGTAAAGTCGTGCGATACCAGTGTAAcatatagattttattattaaatataaaagtatagcATCATACGTAATTGTTTATCAGTTGTGTGCAGAGTTTAAGTATGGGTTAATAAGAATCTTTTCATCTTAAGCGATGTgcagtttactttaaaatgatatgCCCCATTAAACCGCACAGCACCCAGAGGAGTGCAATCGCGTATCTTCTCCAGTCGTTTTCACATTTCTGTGGATTTGGGACACTTAATTCTTTGTCATAGTCTCACCACTGACCTTTAGAAAGCAGCCTGCCCGTGGGCTGTTTCTCACTCGTGTCGTTAGTCATATTTGGGAAATGTTTGTAATTTCAGTTTTCCCTAAACTGTGGTTCTGTTAAAAAATACGAAAAAGTAGagcaaaggcttttttttttcagtgttaaaattgttataagatcatgtacagtattttattCTAGTAGCTCCAGATGTAGCTCAAGTGGATGAGTAGCTTGCTTTCTTTTGTTGTCAGGAATGTAGGCTACCTGTTTACATCCATACATGTCTAAATATGACGGCACATAACATAAACCGTTTTTTGCTGATATATGTATAGATGCCCCCAATAATTAACATCATTCctcttttttgtgcatttgaaatTATATCCTcactgttactttaaaaaggctttaatttagttttgaagGGCCATGTTTATTTGAACTTGTCATGCTTATGTCTGAGAACTGGCATGCTTTAAACACTGTAGCCGATTGTGTAATACCTTGTTCGAAACCTCAAAGACCCATCAGAGCTTCCCAAAGACTTTTACTGTTCATATCTGTGTTTTGCACGAGCACTGAATGCATGTTGAATCACTGTCTGTTTTTAGTAGGTTGTCATGGTTACAGTTTCTGTATGTATTGGgtgcataattgtttttatacagtaaagttTTCTAAAGAag

Function

GO: NA

KEGG:

id description
K23341 ERLIN; erlin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52892 lncRNA upstream 30236 12885331 ~ 12885934 (+) True G35905
TU52891 lncRNA upstream 30886 12885005 ~ 12885284 (+) True G35904
TU52890 lncRNA upstream 33658 12882260 ~ 12882512 (+) True G35903
TU52809 lncRNA upstream 147620 12767948 ~ 12768550 (+) True G35847
TU52801 lncRNA upstream 262887 12650021 ~ 12653283 (+) False G35843
TU53143 lncRNA downstream 182134 13108632 ~ 13108853 (+) True G36062
XR_006251001.1 lncRNA downstream 373257 13299755 ~ 13312652 (+) True LOC122345423
TU53187 lncRNA downstream 373311 13299809 ~ 13311692 (+) False LOC122345423
TU53198 lncRNA downstream 385563 13312061 ~ 13312385 (+) False LOC122345423
TU53205 lncRNA downstream 397535 13324033 ~ 13324383 (+) True G36109
XM_043239689.1 mRNA upstream 150 12912655 ~ 12916020 (+) True fbp1b
XM_043239053.1 mRNA upstream 23891 12886229 ~ 12892279 (+) True ptger4b
XM_043238450.1 mRNA upstream 86566 12826590 ~ 12829604 (+) True pxmp2
XM_043240736.1 mRNA upstream 89992 12820657 ~ 12826178 (+) False usp30
XM_043239686.1 mRNA downstream 3725 12930223 ~ 12935152 (+) False ch25hl3
XM_043239687.1 mRNA downstream 3726 12930224 ~ 12933333 (+) True ch25hl3
XM_043239688.1 mRNA downstream 4523 12931021 ~ 12935152 (+) False ch25hl3
XM_043239668.1 mRNA downstream 39438 12965936 ~ 13022773 (+) True ar
XM_043240839.1 mRNA downstream 125169 13051667 ~ 13056360 (+) True yipf6
XR_006251084.1 other upstream 108954 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 210929 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 400062 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 660498 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 1057599 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1363922 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1373545 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 1373545 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1720991 14647489 ~ 14651911 (+) False fgf5

Expression Profile