RNA id: XM_043239700.1


Basic Information

Item Value
RNA id XM_043239700.1
length 4298
RNA type mRNA
GC content 0.44
exon number 16
gene id araf
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9780838 ~ 9791734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGAGCTTTCGCTGTTCCGCTTTGCCTGAAATTCTTTGCTGATCCGACTTGAGACTGAGAGAATTCAAGATGGCTGTCTCAGGCTCCAGATGAGGGCTTCTTCCTGCTTTGCCCTGGTGTGTAACTTTCTTGCGGCCGACTGAGTGTCAGTGCTGCCAGTCCCTCACTGCCCCTTTGGAGACACCATGTCCAACACCTCCTCCTGTTCCTCCTCGGGGGAAACCAGCCCGGACGACACACCCCGAGGTGGGGGCACCATTCGTGTCTACCTCCCCAACAAGCAGCGGACGGTGGTAAATGTTCGGCCTGGGCAAACTGTCTATGATAGTCTAGATAAAGCCCTGAAAGTCAGAGGCCTAAGCCAGGATTGCTGTGCAGTCTTTCGCCTTCTTGAAGGCCGGAAGAGACTTACAGAATGGGACACTGACATCACACCCCTCGTAGGGGAAGAGCTTCTGGTAGAAGTGCTGGATGATGTTCCTCTTACCATGCACAACTTCGTACgtaaaacattctttaaattaGCTTACTGTGACTTCTGCCACAAGTTCTTGTTCAACGGCTTCAGGTGTCAGACGTGTGGATATAAATTTCACCAGCACTGCAGCAGTAAAGTCCCTACAGTATGTGTGGATATGGACACTGTGACAAAACGGTGTGTTACCAATACAGAAGACTGCCCTTCGATATTGATATATCCAGCCACCAATTCCATATCACAGAGTGACATTCCCTTAACTTCAGATTCTCCTGGAGAGGAACTGCTGACTGCCCCATCAAGCTTCTGTTTGATCATGCGAGGAGAGGACGGTCAGTCTCTCCAGAGGCATCGCTCCACCTCAACCCCCAATGTCCACATGGTCAGCACGCTTGAGCCTGGCGCTGCTGGCCTCATGGAGGATGCATTCAAAATCAGCACAATGGTGTTGTCCACAGGGCAAGAGTCCTCTCCCAAGCCTTCCACTAGCCCACCCCACCTAGGGTCACCAGGAAGAAGACCCCCCAAATCCCCTTCAGAGCCCAAGGAACGAAAGCAGTCCTCATCTGATGATAAAAAGAaagtgcaCCGGGGAGGTTACAGAGACTCCAGTTACTACTGGGAGGTGCACTCACGGGAGGTGTCCATGTTGAAGAGGATTGGAGCAGGTTCTTTTGGGACTGTCTATAAAGGCAAGTGGCATGGAGACGTGGCTATCAAGATTCTTAAAGTCACAGAGCCCACACCGGAGCAGCTCCAGGCCTTTAAAAATGAGATGCAGGTTTTACGAAAAACACGCCATGTCAACATTCTGCTGTTCATGGGCTTCATGACGAAGCCTAATTTTGCCATTATCACGCAGTGGTGTGAAGGCAGCAGCCTCTATCGCCACCTGCATGTTACCGAGACCAAGTTTGACGCCATGCGCCGTATTGATGTTGCTCGCCAGACTGCACAGGGCATGGaTTATCTTCATGCCAAGAATATCATTCATCGGGACTTGAAATCTAATAATATCTTTCTGCACGAAGGCTGGACAGTAAAGATCGGTGACTTTGGGCTGGCCACAGTAAAATCTCGCTGGAGTGGCTCTCAGCAGGTCGAACAGCCCAGTGGCTCCATCCTGTGGATGGCCCCTGAGGTGATCAGAATGCAAGACACTAACCCATATACCTTCCAGTCAGATGTATATGGATATGGAGTGGTGCTCTATGAATTGATGTCTGGGACTTTGCCTTATTCGAATATCAACAACCGCGATCAGatTATTTTCATGGTGGGTCGTGGCTACTTGTCTCCAGACCTCACTAAATTATACAGTAACTGCCCTAAATTGCTGAAGAGGCTCATCATCGACTGTCTGAAATTCAAACGCGATGAACGGCCCCTCTTCCCACAGATCTTGGTGGACATTGAGCAGGTCCAGTATCTGTTGCCAAAAATTGAGCGGAGTGCCTCTGAGCCCTCTTTACACCGTGCTGTACACGCCGAGGACCTGAATCCGCTTCTCCTTCACACCACACACCTCTTGCCTCTTCCAAATGCCGTGCAGCATCATTCCCAGCATGGAGTTCCTCAGAGTTCCTCTCATTATTCCACACATTCCTGAGAGCACCCTAAGTACTTCGTCAGTCACACGTATAGTCAGACACATTACATTTATCTACTTGTTCATGCTTCCTCCCTTCTCTTTTCCATTCTAGCTGCCTGTAGAGAATGTCAGATTCTTTCTGGACCAGTTGCTTTATAAAACAGAAGCAGAGAATAAACCGTGCTCTCTTACTACACTTAATGGATTTCGAAATCCAAGCATCATATCAGCAATGTATCGGCACAATCTTAATGACCTCCTTTTTGaggtatatttcaaaatgtgttaTGGTTGCTTACGTtaccttttttacttttaagattAAAGTAGCGTTTTACTTTAGAACAAGCAAACTAGCAtggagattttctttttttcctctctgttcTTCTGGCTTAAAAAACATTAGCCAATGACAGCACAACGTTGATGGCTCTTCATCTGCATCAGTCACAGAGACTCTTCTTCCAGACCGATTCGCAGTCAGTTTATCATCATGAACATGACCATGCACCCATTACAGTTGTTTTTCAgttgtcatcttttttttaaaattccgTTTTAATTCCGTTTTTGTGGAAAATACCGGTGTCAGATTTGGTTAGACATACACATAACTTGTCCCCTTAATAATTGTGCTGTgctttttgtgatatttataaAAACCCATGACTGATTTGGCTCTAGCTTTGCACTTCCTCTGTACGCTGGTGAGCTTTAAATTGTAGAAAAGTGAAATTcaagaaaaagacacaaagcAGTAGTGCACTTCCTGAAGTGATGGGGAAGAAATAATATACACTTCTTTTGTTGCTTTGAAATCGGTGCATTTGCTTTCTGGAAGTAAAATTACTAAACTAAACTGGCCCATGAAGACCATAAGCAAGACTTGTGAACAAGTACTGACACTTCATGCTAAGTTCACAAGTTCAACTATtaactgtgtgtgcgtgtggtgGTGTTAAGCGGTCGCCATTGCTGCTCGTGCTGTTGAAcgttaagagttttttttttttttaatcctggtCCAGGGTTCATGGAATCATGTGTGTTACATAATGGAGACCTCCAAAATGCACAAAGCAGGGAATCAGCAGGACAAAATTAAGAACACTGCTGAAGAGATTTTAATAACGGTTCTACATTCAGATATGGTTGAGAGAGTTTTGGACGGTGTTGATTGGATTTGCATCTTGGAACTTAAGTGTCATTTTTGAGTGTCTGAGAACAATGTCCGTAAACggtcttttattttgtagtcaGCAGCTTTAAGGTGGAGTTCCAGTTGAAGCCCTCAAGCAGTTTTCAAAGAAATAACACTTCTTAAATAAGGCTGCTAACTTTAGACCCGCCGCTGACCTCTGGTTAATCGACTAAGTTTAGTTATGAGTGAGATGATCAAACTCTTTTCACTTTGCCAGCACCCATTCTCTGAGGGCTCTGATAGGAGCAGGAAGAACAGACACTTTGTAGCGTTTCCTTTTAGATCAAATTTGTGGCAGTGCTTCTGGATGCTGTATTTTTCTGTCAGTTAGTTCAGTTTATTCCATACACTCAAAAGCATGTCTCTGCTGTTTAATAGCAATATTAAAGTTAATTTCCTCCCATTCAGCTGGTTTCAAAAGGACTGACTGAAACCTACAATGATGGGGCCTTATGTGATCTACATTTCCATCTGTCCTTTTAATGGAGTCTTAATATATGTAACTTATTAATTCATAACTGACACTTGTACTAAAGACAGAGCTTTGGTTCTTTCTAGCAATATTCAAATGGGGCTGGGTCCCCCGTTGAGCTGTACTCATTCAAAATACAATGCCTATGGAGGATTCACCAGGTGATTCTGTGCTTTTTAAGACCGTTTCACATCGCCTCAGTGACTAATGGAAATGACTATGTTGTAGTTTCAGACAAACCTGGCTATCTCTATATATTTCAGCTTGATTACGCACTTTCTCTGTCATTAGCAGAGCTTGATGTGCTTCTGGATTCTTGTAGAATGATCATGTGGTACTTCCAAGTGTAGGATTTTTCCTAAGAAACCAGCAGTAATAATATTGCTCAGTACAAGGAAGAAATTGCGTTATCAAGCATTTGTTAGATGGCACTATATGCTCTTCTCTATTCGTAACGGTTGAGAAAGCAAGACTATccgtttatttttgtatgtatttggaTGCACAGCTTGTCCTGTTAAAATGTAGGATGCAATTAAAGCTATAAATGAA

Function

GO:

id name namespace
GO:0060389 pathway-restricted SMAD protein phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:1900108 negative regulation of nodal signaling pathway biological_process
GO:0005057 obsolete signal transducer activity, downstream of receptor molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0046332 SMAD binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08845 ARAF, ARAF1; A-Raf proto-oncogene serine/threonine-protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51347 lncRNA downstream 2600 9777633 ~ 9778238 (-) True G34877
TU51341 lncRNA downstream 14231 9766268 ~ 9766607 (-) True G34871
TU51339 lncRNA downstream 16306 9764073 ~ 9764532 (-) True G34869
TU51125 lncRNA downstream 532797 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 720024 9013306 ~ 9060814 (-) True G34594
TU51619 lncRNA upstream 489675 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 546013 10337747 ~ 10341167 (-) True G35047
TU51725 lncRNA upstream 587032 10378766 ~ 10378998 (-) True G35107
TU51762 lncRNA upstream 721196 10512930 ~ 10513285 (-) True G35139
TU51766 lncRNA upstream 724937 10516671 ~ 10517342 (-) True G35142
XM_043240165.1 mRNA downstream 23005 9754034 ~ 9757833 (-) False tbx3b
XM_043240164.1 mRNA downstream 23005 9754034 ~ 9757833 (-) True tbx3b
XM_043240507.1 mRNA downstream 27881 9750652 ~ 9752957 (-) True tm2d2
XM_043239837.1 mRNA downstream 99037 9579488 ~ 9681801 (-) True unc5db
XM_043239839.1 mRNA downstream 205033 9571202 ~ 9575805 (-) False hdr
XM_043238424.1 mRNA upstream 453 9792187 ~ 9796033 (-) True imp4
XM_043239067.1 mRNA upstream 6560 9798294 ~ 9808373 (-) True rabl6b
XM_043239068.1 mRNA upstream 17135 9808869 ~ 9813130 (-) True tcn2
XM_043240797.1 mRNA upstream 25134 9816868 ~ 9829040 (-) False si:ch211-102c2.8
XM_043240796.1 mRNA upstream 25134 9816868 ~ 9829039 (-) True si:ch211-102c2.8
TU51236 other downstream 378215 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 560331 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 850785 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 1103120 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1349263 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 533381 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 669474 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1076630 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1132193 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1628221 11419955 ~ 11467122 (-) False hmgn7

Expression Profile