RNA id: XM_043239704.1


Basic Information

Item Value
RNA id XM_043239704.1
length 2487
RNA type mRNA
GC content 0.44
exon number 13
gene id pmpca
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20071282 ~ 20075708 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTTCATGGTCAAATACAATCCAAGATGGCTGCTCACATGTCAAGATTAAGGGGCTGGAGCCGAGCGCAGAGGTATGGCATCGCAGTATGTAGACAGTACAGCAGCGGCAGCGCGTATCCCAACGTGTCCCTCTCCACACCGTTACCCGGGATCCCCAAACCGGTCTTTGCCTCCGTGGACGGCCACGAGAAATACGAGACTAAAATCACCACCTTAGAAAACGGACTCAAAGTCGCATCTCAGAATAAATTCGGTCAATTCTGTACAGTTGGAAttttagtaaactCAGGCTCACGCCATGAAGCAAAATATCCCAGTGGAATTGCACACTTTTTGGAAAAGCTGTCATTTTCTTCTACAGCCCACTTTGGAAGTAAAGACGAAATTCTCCTAACACTTGAAAAACACGGAGGCATATGTGactgccaaacatccagGGACACAACAATGTATGCCGTTTCAGCTGAAGTTAAAGGTCTGGATACTGTAGTGAGCCTCCTGTCAGATGCGGTGCTACAGCCACGTTTATTAGATGAGGAGATTGAGATGACTAGAATGGCTGTTCGGTTTGAATTGGAGGATCTGAACATGAGACCTGACCCAGAGCCTTTACTAACAGAAATGATTCATGCTGCTGCTTACAGAGGCAACACTGTGGGTTTGCCTCGGTTCTGCCCTGCcgaaaatgttgagaaaatcgACAGGAAGCTGCTTCATAAGTACCTACAGAGCTATTACTGTCCGGAGCGCATGGTGCTGGCTGGGGTTGGGATTGAACACGAGCAGCTTGTGCAGTGTGCCAGAAAGTATCTCCTAAATGTTAAACCGGTATGGGGTGCGAGCACGCCTGCCAACGTCGACCAGTCTGTAGCACAGTACACGGGCGGAATAGTTAAGATGGTGAAGGACATGTCAGATGTGAGTTTGGGACCAACGCCCATTCCTGAACTAACACACATCATGATTGGGCTGCAGAGCTGTTCCTTTTTGGAGGATGACTTCATCCCCTTTGCGGTCCTCAATATGATGATGGGAGGCGGGGGATCCTTCTCTGCTGGAGGGCCCGGAAAAGGCATGTTCACCCGTCTCTACCTTAATGTGCTCAACAGGCACCACTGGATGTACAATGCCACTTCATACCACCACAGCTATGAAGATAGTGGTCTGCTTTGTATCCATGCAAGCGCAGACCCTAGACAGgtGCGAGAAATGGTGGAGATCATTACGAGGGAGTTCATTCAGATGACTGGGACAGCAGGAGAAATGGAGCTAGAGAGAGCCAAGACACAACTGAAATCCATGCTCATGATGAACCTAGAGTCACGACCGGTCATCTTTGAAGATGTAGGTCGACAAGTACTTGCGACAGGAAAGAGGAAGCTGCCACACGAGCTTTGTGAGCTCATCAGTAACGTTACAGCCAGTGACATCAAGAGAGTTGCAACGAAAATGTTGCGCAGTAAACCTGCGGTGGCAGCGCTGGGGGATCTGACAGAGCTGCCCTCATACGAGGACATTCAAGCCGCTCTCTCTAGTAAAGACGGACGCCTGCCCCGCATATACCGCCTGTTCCGGTAGAGGACCGACGGCTGGCTCCATCTAGAGGCAAATATAAGGACTGACCCAAAATTATTATTCTGGACTGGAATTTAAGTGCAATGCTTAGACTGtgattgcatttcatttataaaacatttaaaacattagtttAAACCAATAGTCGAcccaaaaaatgtcaatttaatcACCCTCGTGTAATTTAAAAACCGTAGGACTTTCTGtcgtggaacataaaagaacacatttttgtCTATACAAATGTAAGTGGGTTATGTAACGggtttgctatttttaaaatatcatcttttctGTTATGCAGAAGAAaggtttgtaatgacatgagggtgtGCAAATGACAGATCTGAAATTGGCTGAGTTTGTTCACAAACCAGTGCGTTATTTTGCATTACTTTGTTCAATTCACCATgtgtttaaagtaaattaatgtgTTAATCTCACATGTCTATCTTAATTGGCTCGATAAGTAGACTTCTCCATGCCATCTTTTTTCCACATTTCTGCATTGTTGTTTATAGGCTGCTTTTCTATGTAAAACTGGGCAAACTCAAATGATATTTCACACATCACGTACTGTTTTTCAGAAAGCTCTACCAAACCCTTATGCTTTAGTTagtacattaaaatgaacagaatgaCACAAACTGTATGGTCTACCACTTATCCTAGCTGTAAAACACCCATTTTCAACCTCTGATCACGAACTAAGAGTTGGTTTGCCAGATTAATGTATGTCTTTTTACCGGTTTGTATTGGATTAccctacaaaaatatatttatttccttgTACTTCATCAGTACAAGTTTAGtgttccatttttttccccctaccTATTAAGGCAATGGTTGAATCTTTCATGAGCCCTCacgtttcctttttaaaaaataaaataaaattaaatcttga

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01412 PMPCA, MAS2; mitochondrial-processing peptidase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56164 lncRNA downstream 15484 20053350 ~ 20055798 (-) False G38058
TU56076 lncRNA downstream 114620 19956428 ~ 19956662 (-) True G38019
TU55943 lncRNA downstream 367597 19703420 ~ 19703685 (-) True G37928
TU55941 lncRNA downstream 368939 19702069 ~ 19702343 (-) True G37926
TU55882 lncRNA downstream 561000 19505921 ~ 19510282 (-) True G37877
TU56332 lncRNA upstream 80073 20155781 ~ 20160794 (-) True G38147
TU56349 lncRNA upstream 200960 20276668 ~ 20279101 (-) True G38156
TU56353 lncRNA upstream 208915 20284623 ~ 20286229 (-) True G38158
TU56356 lncRNA upstream 221600 20297308 ~ 20677930 (-) True G38161
TU56326 lncRNA upstream 319929 20395637 ~ 20396293 (-) False LOC122345844
XM_043238273.1 mRNA downstream 10085 20058275 ~ 20061197 (-) True ptrh1
XM_043238766.1 mRNA downstream 31113 20035492 ~ 20040169 (-) True cfap157
XM_043240677.1 mRNA downstream 135712 19865019 ~ 19935570 (-) False kcnt1b
XM_043240344.1 mRNA upstream 19761 20095469 ~ 20109238 (-) True ptgs1
XM_043239939.1 mRNA upstream 52179 20127887 ~ 20130221 (-) True zgc:101858
XM_043239940.1 mRNA upstream 54751 20130459 ~ 20131947 (-) True ppil3
XM_043239941.1 mRNA upstream 56476 20132184 ~ 20138436 (-) True lrrc8ab
XM_043240337.1 mRNA upstream 96535 20172243 ~ 20185023 (-) True olfm1a
TU56161 other downstream 15484 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 135706 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other downstream 135706 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other downstream 135706 19868814 ~ 19935576 (-) False kcnt1b
TU54996 other downstream 3358115 16687415 ~ 16713167 (-) False G37277
TU56325 other upstream 49881 20125589 ~ 20127390 (-) True G38140
TU56460 other upstream 853442 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 1288530 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 1536980 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1733305 21809013 ~ 21826105 (-) False akap10

Expression Profile