RNA id: XM_043239710.1


Basic Information

Item Value
RNA id XM_043239710.1
length 5358
RNA type mRNA
GC content 0.46
exon number 21
gene id tbc1d8b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11170213 ~ 11186674 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCTAAGCAGGGCAGATGTGGAAGACTACAATCCCAGCGGCGCCGGTGTTGCTGTCTTTGGCTCGGTTTCTGTCGACGTGGGAAAAGCGGTGCAAGAGCAAACAACTCAATCTATGGGTGTATGCGCTTGAGATGATACGAGTGTCATGCAAGAGGACGCGTGTCTCTGAAAACAGATTCCAGCATGTGGCTCAAACCCGAAGAGGTGCTTCTCAAAAACGCGCTGAAATTATGGGTGACGGAGAAATCCAACGATTACTTCGTGCTGCAGCGCAGACGCGGATACGGAGAGGACAGCGGCGGACTGACAGGCTTGCTGGTTGGAACTTTGGACACAGTTCTTGACTCCACAGCCAAAGTCGCCCCGGTTCGCATTTTACACCAGACGCCCGACTCTCAGGTGTACTGGAGCGTTGCCTGTGgagcATCTTTAGAGGAGATCTCGCAGCACTGGGACTGGCTGCAGCAGAACATCATCAGaactctctctgtgtttgattCTGGGGAAGACATCACCAGTTTTGTCCAGGGAAAGATCAGGGGTCTGATAGCAGAGGAAGGCACATCAACCGGTGATGAGGAGGACCCCGAACGCTTCCGGGAGGCTGTGCTGCGCTTTGAGCGTTTGTTCGGTCTGCCTCAGAGAGAGAAGCTTGTGACGTATTTCTCTTGCAGCTACTGGAGAGGACGAGTGCCAAACCAGGGCTGGATCTACCTCAGCACCAACTTCCTGTGTTTCTACTCCTATATGCTGGGAAATGAAGTAAAACTGGTGTATCCCTGGGATGAGGTGAGCCGCCTGGAACGTACGTCGAGTGTGTTGTTGGCAGAGAgcatccgtgtgtgtgtgcgtggagAGGATCATTTCTTCTCAATGCTCCTGAGGCTCCAGCAGACATACATGATCATGCAGCAGCTGGCCGACTACGCCATTGTGCGGTTCTTCgacaaagaaacatttattgctGAACATCCACTGGCCAACCCTCTTCACATCACACAGAGGGCTCTGGAAATCCATGCAAGGAATCAGTCATTTCGAGCATTTTTCCGGTTGCCACAGGAGGAGAATCTTTGTGAAGTGCATGAGAGTTTCCTCTGGGTTCCATTCAGCCATGTCAATACGCTTGGAAAAATCTGTGTCTCTGAGAACTATCTGTGCTTTGCGAGCCAGGATGGGTCCCAGTGCCATCTCATAATCCCTCTATGGGAGGTGTTTAGTGTAGAGCTGCCAGATCGTGGTAGTCGTGCCCTGACTGTGTCTCTTCGTGGCAAGAGAGCTTTGCGTTTTTCAGAGGTTCGGGATTTTGAGCGACTAGCTGCCACCATCCGCAGGAAGTGTGGAACGGCAGGAAGTCCCCAGCACTACATCAGTAATCCGGATGAGGAGGGTGTGATGGTGGGACAAAGTCAAGCTGTCAGCACTGAAGCTCTGATGAACGTCTTTCATCCGCATGATGCAGAAAACCTTGACCCCAAAATGCTAAAGGAGCGAATGAAAGAGCAGTCGTGGCAGATCCATTTTGCAGAATATGGCCGTGGAACTGGAATGTTTTGCACCAAAAAAACACGGGATCTCATTGTACGAGGAGTTCCAGAGACTCTCAGAGGAGAACTGTGGATGCTCTTCTCAGGTGCAGTACATGACATGACCTCTCATCCGGGATACTATGGCCGGCTGTTGGAGGAGTGTATGGGCAGCAGCTCGCTTGCTTGTGATGAGATTGAGAGAGATTTACATCGCTCGCTCCCAGAACACCCAGCATTCCAGAGTGATACAGGAATCTCCGCTCTTCGCCGTGTCTTGACTGCCTACGCTCATCGCAACCCCAAAATCGGCTACTGCcagGCGATGAATATCCTGACGTCTGTGTTGCTGCTGTATGCTAAAGAAGAAGAGGCTTTTTGGTTGCTGGTCGCTGTGTGTGAACGAATGCTCCCGGACTACTTCAACCGTAGAATTAttgGAGCACTGGTGGACCAGGCTGTGTTCGAGGAACTGATTCGTGAGCATCTAACCCAGCTGACAGAACACATGACGGACCTGTCCTTTTTCTCATCAGTGTCGTTGTCATGGTTCCTGACTCTGTTCATCAGCGTGCTGCCAATAGAGAGCGCTGTGAATGTTGTCGACTGCTTCTTTTATGATGGTATCAAAGCCATCCTGCAGCTTGGCCTTGCTGTCCTTGACTACAACATGGACAATCTGCTTTGTTGCCATGACGACGCAGAAGCTGTCACAGTCCTCAACAGGTTTTTTGACAGTGTCACAAATAAAGACAGTCCCCTGCCAGCTACTGTACAGCAGGCATCTGCAACAGCCAATGACAAATCAATACATAAGGTTGACATCAGTGATCTCATCAAAGAGGCGTATGAGaaatatggAGACATTCGAACGGAGGAAGTGGAAAACATGCGGAAGAGGAACAAGCTTTATGTCATTCAAACACTAGaagacacaacaaaacaaaatgtaCTGCGTGTTGTTGCCCAAGACGTGAAATTCAGTGCTGCACAGCTGGATGAGCTCTACTTGCTTTTTAAGAAGCAGCACTTTGTGAGCTGTTACTGGTCAGTGTGTAGTCCTGCCCTGCAGAACCATGACCCCAGCCTGCCATATCTGGACCAGTATCAGCTGGATCAGTCCCAGTTTAGTAGCCTGTTTAACCTCCTGCAGCCgtggaccacacacacacacgtgcgctcGCTGGCATGTTCAGCCTTTCGGCTTCTGGACGAGAACGGAGATGGACTCGTGAACTTTAAAGAATTCATATGCGGCCTGAatATCCTATACAACAGATCTTtcacagaaaaactaaaatttctCTTCAAACTGCACCTTCAACCAGGGACCCAGGAGTGTAAGATTTTACCGTCATCTAGATTCTTTCCTCCGGCTGAAGATCACTCTTTCTCTACTCGTCTTTCTGACTCTGCAGAGGATGGAGTGATTAGAAAATGTCCAGAGAGAGgtcGTGCTAAAGTAGATCTGCAGGAATATCTGAAACAGTGGCAGGAAGACTTGCAGCGAAGAGAAGAGAATATTAAAGATCTGCCCAGAATTAATCAGGTGCAGTTTATTGGTTTGACAAAGACTCTGTACGGTGTGTTCCACGGCaacgaggaggaggagagtcTGTACCGGGCTGTGGCACGAGTGACTAGTCTTCTGCTGCGCATGGAGGAGGTAGGGCGGAGACTACAGGAGAGCAGCCCGCAGAAAACACCCCAAAGCACACCCACCAGCACGGCTCAGCCGGAGACCTCCCCAACATTACCCACCAGCCCTGAAACCGAAACCCTTGCTAAGGGTGAAGGCGATCGACCCGAGTCTCCGACCAGTCAACAAGAAACCGCCCCGTCCCACTCTGACATTACCCCAACCTCAACCTCGCGCCCTTCCACTCCCACCAGCAGTCCCACCGGAACCAGCAGCCCCGTGTTGGACACGCCCACAGACACCCCCAGCTCACCCTCTGCGGTCAGAGACGGGGACTGGAGTTTCTCCTTCGAGCAGATTCTTGCATCTCTCCTGAATGAACCGTCTGTGGTCCGCTTCTTCGAGCGGGCCATTGACACCGATTCTCTGATCGCACACGCGCGTAAAAACCAGCTTAAAGACGCACACTAACACACTCTGTCAGAGCAATCACAGCAAAACACTGCCCTAAAAGCCATAAACCCCTCTCCCTTCCTCTTTCTCTTGTTTCTGTGTGACTTGTACAGGCAAGTGTTTGTGAAACACTCATGTCCTTTAAAGATGAGGAAaccgttttatttatatacagatgCACATATGCAGGAAATGAAAGggacccccccaaaaaaagtataaaatgatTCAGATTGCACagtataaagaaaaacatattttgatgtAATATAAAAGATTAGTGTTCGATGTtatttgtgtaatataaatgattGGTGTGAGATATTGTCATATAATGTAGATGAAGGTATTATAGATGagctattatattataaataatagtataaatgGCCCGTGTGATTTGGGATGACGGCTTTGCCTGCTTCATCCATTAAGTAACCTCGAAACCGCTCACACGCACATGCACTACGTCTGTCATTCCCAGCCTGACCTAACACACGTAAACACATGTGGGACCACAAAAGGAAGGATGATTCTAAGGGAAAACAAAATGCTATGCTGTTGAAATGCTAATTCTATTGTTTGAGAATGCATTCAAAACATCTTGTTCCATAACACATACATCGCCTTACATTACATACCTTGCTCGACCGAGCTATGAAAACGTACTTTCTGTAGAGGCCTGATTAGGAATGCCCAGAGCGGTTATGCTAATGAGGAGGGCGGAGTTTAGTCCACATCATATCACATTCCACTGCACTGAAGGTCTGTAATATTCCAGATAGTCGTGTAATTCTGATTcactgaatgtgtttgtgttgaaaaACCGAAATCTGTGGTTTATGCCTTATTAGTTTTTGATTCAGGACTTCAGTACGATCACAAGTGCTTCCATTTAACGAAACTTATTTcatctttaaacatttttcgCTATCATTTTAGAGAttagtttcaaaatatatatgaattttgtCATAAAGCAAGAAGTATATTTTCTCGCATTGTTTTACAGATTAGAAAATATAGAGAACATACTGAAATGCTTTAGCAAGAAATATATTTCGAAGTGTTGCGCTGTAAATGATATGCAAAGTGTACAAGTAATTCTTCTGTCAGTTCATGTAGTCGAAGCTGTAAGAAACATTAAGTGATAAATCACTTCACCTATCATTAGAGTTCTCGTATGATGCTTAAAATGGACAAATGAATATGCAGAATTGTTCTTAATTTTGAATTTGTGAGATGGTGAGAGCTTGTGGTGATGAGTGCAGGAAAAGGACGTTGGTGTTTTGTGGTTATTCTGTTTAAAGTTGTGTCAGGTCTACACCAGCTAAAGTTTTTCGTTCTGTGTGTAGTAAAGTAGTTATGTTCTTCTAAAGCTGAAAAGGACCTTGGAGTAGGAAGctgtaatgtgtatttttcttttgactGGTTGTTCATCTAAGGATGTCGTTTTGGTTTTGTATTCTTGCACACTATCCACAAAGTCCATAGAAAGTTGCATTGAAGgataaattattagtattacaTCTCAAAAGCCGCTCTCGTACTGTTCTTGCTGAACATTTGATGTTCGCTTCATGTACTTCAGGGTAATAGTGTggtcattttgatttttattttcatttttttttatgatttttgtcttaaatatataactttgtTACAATCTGTCCGTGCCTCATAAACTGTCACATTATGAAAATTTaatgatgaattaaaatgtatggaGAAAGGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19951 TBC1D8_9; TBC1 domain family member 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51912 lncRNA upstream 22971 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA upstream 22971 11137052 ~ 11147242 (+) True LOC122346180
TU51871 lncRNA upstream 151021 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 331846 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 353912 10813457 ~ 10816301 (+) True G35197
TU51930 lncRNA downstream 580 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 17826 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 19642 11206316 ~ 11208454 (+) True G35274
TU51940 lncRNA downstream 19642 11206316 ~ 11209405 (+) False G35274
TU51957 lncRNA downstream 108033 11294707 ~ 11303431 (+) False gria3a
XM_043240865.1 mRNA upstream 661 11154539 ~ 11169552 (+) True rnf128a
XM_043240867.1 mRNA upstream 19988 11136223 ~ 11150225 (+) False LOC122346180
XM_043240869.1 mRNA upstream 19988 11136223 ~ 11150225 (+) False LOC122346180
XM_043240868.1 mRNA upstream 19988 11137086 ~ 11150225 (+) False LOC122346180
XM_043240870.1 mRNA upstream 19988 11137087 ~ 11150225 (+) False LOC122346180
XM_043239778.1 mRNA downstream 11537 11198211 ~ 11204226 (+) True mtmr2
XM_043239779.1 mRNA downstream 11537 11198211 ~ 11204226 (+) False mtmr2
XM_043240523.1 mRNA downstream 23702 11210376 ~ 11217745 (+) False fam76b
XM_043240522.1 mRNA downstream 23703 11210377 ~ 11217745 (+) True fam76b
XM_043240693.1 mRNA downstream 31849 11218523 ~ 11222820 (+) True cwc15
XR_006251083.1 other upstream 107899 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 237050 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 439161 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1052087 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1370855 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 737554 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1062464 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1062464 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1327402 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1516697 12703371 ~ 12705241 (+) False iscu

Expression Profile