RNA id: XM_043239714.1


Basic Information

Item Value
RNA id XM_043239714.1
length 8439
RNA type mRNA
GC content 0.47
exon number 24
gene id pdzd2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15205951 ~ 15264945 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCTGAAGTACGAGGCGCTGGATGGTGTATAATGGATCCCAGACGCGCGTGCAAAGTTTGCGAGCGCCGAACCGAGACGCGTTTTCGATTGACAACCCCGGAGGCTGAGCCCCGGACACTGTCCGTGTCTACGACAGGCTGTCCTGTGAAAAAGAGCAGCCATGGACTTTAATCAAGCGCTGAGTAGATCACATGAAAGGCGCGAGTCGCTGGAGCTGTTCGaaacattttcatgaatatACAGCGAAGTCGCTCAGGGACTTTATACGGATGATTGCAATAATTATTGAACTCACGGGAGCTCGGCGCGTGCTTGCTGTCGGGAACTGACCTTAATGatgaaatgatgatgatgatgatgacgacgaaGGGGTGCAAGTGATCGTTTCAgttacTTGGCGGACCAGTGCTGGAATGGAGGCTGCATCTACCTGATCATGTTGCGAAGAATTAAACGCAAAGCTCCTCTCCCTCCATGCAATGGCAGCGGGGGCAACTCCGTGGACGTCTCTAATGAGCACCGGCGCAATGTCTCCTCCGAGCTTGCAGGCAGCCCCACACAGAATGGACAGAACGGCAAACGAACTCGCAAATTTGGCGTCATTTCCCGTTCCTCATTCACTCGCGACAGCAAAGACAGTAAAGATAGCCGGGACTTTGAGCATGAGAATGGCTACAGCTCCATGGAAGCAGAGGTCACGTCCCCAGAGAGCAGCACCCCTCAGGACACACCGACCGATGAGAGACCAGTCGTTGGCTCCTCAGTGCTGATGTCCAATCACATGAAGGTGGGAAGCACTGCCACCCTACCCAGCCGGTCCCACTCACGCCTGTCCGAAAGTTACAAAACTGAGTCGATAAGCAGTGAACCTTCCGGTCAGCCCCGTGAGGGCAGCCGGATCTGGAAGATGCACATGGTGAAGGGTCAGGACGGGCTGGGTATCCAGATCACGGGCGGGCGAGGGTCCAAGCGCTCTCCTCACGGTATCATCGTGGCCCACGTGGAGGAGGGAGGAGCCGCACAAAGAGATGGCCGTCTGAAAGCAGGTGACGAGTTACTGATGATAAACGGTCATTCCCTGGTAGGACTCTCACACCAGGAGGCTGTGGCCATCTTGCGGTCCACTGCTGGACTCGTGCAGCTGGTAGTGGCCAGCAGGGATGAATCCGAAGTGGACTTCCACAAGTACCCGTCCACCAGCTTGCCCGACCTAGTGAGCACGTGCTCTGGTCCGGACGCCTCTCCCTCCCCTGGGGAGGAGAAGGAGAACATGGAGCCGGATGTGGAGGACGTGAGGGCCAGCAGCCTTTCACTGCCCACCCAGGACTTGTTTACAGATTTTGACAGACTGGAGGAACGTGGCAGGATTGAGGGTCCCAAGGGATGTTGCCGAAGCCCCACACCAATGAAGTTCCGTAGCAGATCTCAAGGTGGAGGAAGCCGCCTGGAATCTGTTGGTGAAGATGATGAGCTAATTGTGGAAAACGGTGATGCAGGAAGTGATGTGGCAGAAAAGCCAGCGCGAGGAGGACGCAAACATTCCCTCCCGCAGCAGCTGGATACAGTTGGGATTCGACAGGAATATCAAATTGTGAAGAAATCGGCTCGTTCCCTGAGCACTGTTCAAGTGGAATCGCCATGGCGACTGGCACAGCCATCCATAATCTCCAACATTGTCCTAATGAAAGGACAGGGCAAGGGTCTCGGCTTCAGCATTGTCGGTGGGCAGGATTCAGCCCGGGGGAGGATGGGTATATTCGTCAAGACGATTTTCCCCAGTGGAGCAGCTGCAGCAGACGGGAGACTGAAAGAAGGTGATGAGATATTGGAAGTGAATGGAGAGTCTCTCCAAGGCCTGACGCACCAGCAGGCCATTCAGACCTTCAAGCAACTGAAGAAGGGAGTGGTTACCCTAACTGTGCGAACCCGTCTGAGGAGCCCAAGTCTTACACCCTGTCCTACTCCCACCCTACTCAGCAGATCCAGCTCTCCAAACTCAAATGCCAGTGGTGGGACTCCAGTCCCTCCTAGCTTTGAAGATGGGGACTCTCGTAAGGGACCTGGTCCCAAAGATCGCATTATCATGGAGGTTACACTGAACAAAGagccaGGTGTTGGGCTGGGTATCGGTGCCTGTTGTCTAACACTGGAAAACAGCGCTCCTGGGATCTACATCCATAGCTTGGCTCCAGGATCTGTTGCCAAAATGGATAGCAGACTCAGTCGAGGAGACCAGCTCCTGGAAGTGGACTCTGTGAGCCTGAGACATGCAGCATTGAGTGAAGCTTATGCTATCCTGAGTGAATGCGGACCCGGCCCAGTCAGCCTCATCATCAGCCGACATCCAAACCCCAAGGTGTCTGAACAGGAGATGGATGAAGTGATCACTCGCTCCACTCACAGAGATAGTCATTCTTCCCACACGCTTGGCCTGCCGTCAAAGAGCCCATCTCCCACTGTTAAAGTCAAGCAGGGTGAGAGTAATCCTGCTCTCAGCTGGACCATGAAGAGATTCCTTGAGCCAGCCAGCAGGCAAGGCTCGCTGAGTTCAGAGGCAGAGCTCTCTCAGTATTTCTCGGTTCACGATGTCCCCAGCCATTCTTCCCTTTCTGAGACCATGGCGATGGGATCTAGTGATGACGACATGCTGCATAGTAGCAGGAGCTGTAATACGTCTGTGGAGGAATCAGCAACACCTCAGTCACATGCAGTCTATCAGGATTGCTCCTATAAAGCTTCAGAGAGTAGTCCCACAACCCCAGAATGCTGTAAAGCCTCTGGAGGAGGTGGTCGCACCGCAGACACACCCCAACAGGCCAGCGTGGGCAGCAGTCCGAGTTCTGTCCGCAGCCCGCTTCTTCGCCAGCGTCGGGTCATCTGCTATGAGGATGAGCCCAGCGACGACGAAACAGGCCTTGCAGAGGACAGTGGGCCTTTCCGTTGCCGCCTTCGCGGGGTCTCAGATGGCAGCCACAACCACCATCAAGAGGAAGACTCTGGTATCGTAATAGCCACGTCATCTCTCGAGGTTGATGATGAAAGCCAGGATAGCAGTGAGAGCCACAGACAGATCGACAGCGAACCAGCAACGCCAATCTATGGCAGCTCGCTCGAATCTGAGGAAGGACCTAGTGGCCCACCTAGCGCCGAATCTCCCTTCATGCCTATTCGCTGTATGGAGACAGCCGGAGGAACAAACCTGGGCATCAAAAAAGATCCACATCGAGAAGGGCAGGAGGTCAAACGCTCACCCAAGCTGGAGCACAAAGCCGTGACTCGTGTCAAAAGCATGATGAGCATTGAGTGCCCCAACCCTCCACAAAAAGCCAAGGGTGAAGAACCGGCTTTACTCCCGGCAGCCGCTGCCCAGGTTACGCAGAACAGCACACGGCCACCTTGCAAGATGCTACACTGCAAGAAGGGGGAATCCAGCGAGTTAGCAGGGGTCTGCACCATTGAGACAGTAGTGCTCCAGCGTAGTGAGAACGAGTCTTTTGGTCTGGATCTGGAGATTAAGTCCGCTCCACTTAAGGTGCTGATCACAGGACTGAGACTGGGAGGTGTTGCAGAAAGGGAAGCCTCAGGGAAGATGAGCGTTGGTGATGAGATTGTAACAATTGGTGACACTCCCGTGTGTACATCCACCTATCAGGAGATCTGTGACCTCATGCACAACCTGCCAATCACATTAACCTTAGAGATAAAAAAGCCAGTCTCAGCTGTAGATCGACTTTCCAGCCTGATTATGTCTTCTGGCTGTGAGGGCCCATCTAAAATTGAGACACCTAGACCTCCAGAAGAAAGGAATAATATGGACAAAACTATAGTTGCGGCCcaagaaaaccttttatcagaaACAAATGCGAAAGAGGCATTAGCAATCCACAGCAGCAGCATTCCCATCACTAACATTGATGATGTCATAACTGAACTGACCTCAGcagaaagcaaagaaaaagacaaaagtgtcTTGGATTCCACAGACGCAAATGTAAGGACAGAAGAGTGCAGTGAAGTAGATGAGAGAGGGACTGCAGCGCAATCTCAACCTAGCCTCTCGGATTTCTCTGCCCTAGATGTTGGGAATAGCACTTCCCATTTTTCTGTAGGAAAgacgtttttaaataattactcaAGGAACTTTAGTAACCTGGGAGAGGATGTTGACTCTCTAGAGAAAGGACATGAAGAAAAACCAAGTATGTACAGTCTGGTGGAAGATAGTGACTCTGAAAGTGACTCTGCAGATAGTGCTGTCAAAGTAGAGTCGTCTCAAGGTAACTGTGAGGATCCTCAGGACACCGACTCAGATGAGGAAGAAGTTGAGCTCTGTTACAGCACTGTCAGTCAGCCTgcattcagccaatcagaggccaATAGAAAAAGCATGGCCAATTGCCACACTGTTGAAATTCTTGCTAGTGGAGTCATACTTGCTAGTATGGATCGCCACAACCCTCTGTCACTCACAATGCAAGACAAGGATCCAAAAGAGAATCATACTGTCTCTGAGTTACCAAATCAACTTTGTCCTCAAGTTTCAGCTGATGATCTCCTAAATGGGGAGAGTGGACACACTGCCACACAGAGAACACCATCAAACTGCAAAACTGATGAAAAATGTGAAACCATTTCAAAAGCGGTTTCTTTTCCCACTGTTACTCAGGGCATTAGTCATGTCACCCCAAGAAGTCAAGAGAGGACAACTAAGTTGCACTCAGATGCATCTCTgtcagaagagaaaaacaatacTGGGCAAGTGACACTGGGGTCTACTGTGTCACAACCCAAGGCATTAAATGGTAAAACTAGTGGACAGGCCTCCTCAATAGTTGTTCCAAAagacaaggagagagagaaagttaaTCCTTTACTTGACTTTAAATCATCATTTTCCCAAACCCAGAGTAAATCTAATTGTGTCAGATCTTTGGGAACTAAATCCCCAAATGACAACCCCGTCTCTCCCCTGCTGAGAAGTAGACTCAAAGTTGAtgataaaaagtcaaatacCTCATCTAAACTTAAGGGTCTGAGTATTAAGAGTAAATCCAAAGATCAAGAACAGTCCGTCTCTAGAACGTCAAGGGTGGAAGGCCAAGGACAGAAAAAAGCACTCAGCTCCCCAAGTCAGTGTCCTaaacttctctccaaaaaaaccaCACCGACTGGTAGCCCTAAATCCACCAGAACATCTGAGAAGATCAGGGTTACTTCTTGTAAAACTGACCAACCAACTGTGTCCAGTGTGTTAAAGACAAATTCCATTAACACCACCAAAGAAGAACTCAAGCCTTCCAAGAAGGAACAAGTCTCGGACCTAAAGGAGCAAGTCTCAAAATCAGAGGTCATGGTCATCAACACTCAAAGAACTTTCATTGAGGTACGACTTTCATCCTCTTCATCGTCTACACCTGTGCTGACACGCAAGGAAGTTGGGAATGCAAGTCATTTAAGCTTGGCTTCTGTGTCCGTGGATCAAGTCCAGTGGGAGGAATCAAATTCTGACTCCTCTCTCGGAAGGCACAAAATCCCACTAGATTCAACAAATTCTTTGTCTATTGGTTTGCACCATAATGGTAccaataaatcaaatgaaacgTCTTTTAATGGCCAAGAAGAAAATCACCTCAGGAACTCTAATAATAAAGATGCTGCTAGTCACAAAACAAGCATATCCAAATTGTACCTGAGAGGACTAGACCGCAGGAGCTGCTCTACCGACATTAGTGGGTCACTTGACCCAAACCCCTTCTCAGTTCGTCAAAGAATCCAGTCCTTTGAGAATCTAGCCAGCTTTGATCGATCTATCATAAAGTGTATAGACATTCCATTTTATGCTAATAACTCAAAGCCACCTCTGAACCGGAGGTTATCTGGGTATGCTGGATCTGTTAGCAGTCAATCCGGTGACAGTCGTTCTTTGAGGAGGAGTTTCAGCTCTTGTGTAGACCATTTAAGCTCAACTCCATCTTCACCATACCCACAGAATTCAGCTTCCACTTCAGTTGTCACCTTCTCTGAATCAACTCCTCAAAATCAAACCACCGAAGCTGTTATAAAAGAGCAGGTGAGAAATGAGGCCTCTGTGAACCAGCCTGCTGTACACACACCACCAGTACTGCGCTCCCGCAATGCCCGCGCTCATGGAGGCCTGTCACGCTCCAAACTGAGAGAGATAAAGGCACTGAGCATGCCTGAACTGGACAAGCTGTGTACTGAGGATTTCACCAGCGACCCTGGAAATGTGGTTTTTAAGACGGAGCTGGAGATTTACCCTTGCAGGTCCATAGACCCAGCATCACCCAACCTGCAGTGCACCGTGGTGACCAGGATGAGCAGTGTTGATGCTGGGATTCCTGGTTCAACTAGTAATGGGGACCAACACGAAGGCCAGATCACAGGGCTCTCATGCTGGTCTATAAGATTGAAAGATCTCGAATCTTCTCCTTCGGACCAAAATAGAGTGCAAGATGTTTTGTGTTCCCTGACAACCAAATTGAATGTGACAAGTCTCATACAGGAAACAAGCACTCTTTCAGAGgttaaAGATGACATTTACTTTGTGGTCTTAACCAAAGAGCAAGGATCTGGACTGGGTTTCAGCATCGCTGGAGGAGTAGATCTGGAGCAGAAATCTATTactGTCCACCGGGTGTTCACTCGAGGGGTGGCAGGTGTAGAAGGTACCATTCACAGAGGAGACAGAGTTTTGTCAATAAACGGGACCAGCTTGAGTGGCATCACACACGCAGAGGCGCTGTCCTGCCTTCATCAAACCAGACTCCCGAAGCAAGCGTTAGTGATCATCCAGAAGAGCAAGAACACTGAGCCAACATCACCTAGACGAGAACTTCCTCTTCAGACTGGAATCTGTCCTACTCCAGGCCATAGAGACGACCTCAGAGAACATAAAACAAGTGTGGAAGTGGGGCCAGACGGGGCTTTGAGTGTGGAGTTACAGAAGACTACAGCCGGTTTAGGGTTCAGTCTAGACGGAGGCAAAGCATCTGCCCATGGAGATCGACCTCTTTACATCAAACGCATCTTCCGTGGAGGAGCTGCTGAACAGTCCCGGGTCATTGACGTCGGAGATGAGCTCCTAGCCATCAACGGCAGGTCTTTGCAGGGCCTTATGCACTACGATGCCTGGAACATCATTAAAACCGTCTCTGAGGGTCCCGTCCAGTTAGTCATCAAAAAACCCAGGACTTCAGTATGACGTTTGATTTATCTGCACGTGTTGCACGTTTGTGAGATGCCAAACTCTGGTGGACTCTCATTGTACGTAgactttactttttatatatatatatatgtttgttacAGGATCTCTATGATGAAGAATTTGTTGCACATTGATTTTTATACAAACCAATGCTTCTGCGGATTTGTGGTAGACTCACATATGCGGGCTTGAGGTATTTTTAGTATGTCTTAGAACTTTGTATCTTACGGACTTTGTGCATTATGACTTTTTGAAGACATTTATGCCTAATTGTGAGAATTCTAAACGATACAGTAACTGTTTCccttgtaaaatataatttaatgacaaTATTGTGGaaattgttttatatgtatagcTATGATTATGTGGTGATGATGCAAACCACTAGAGCGTGTTCACTCTGCTTCGTCTAATGGATCACAGTAGATCAGCATAGATATCAAACTCTATGTGAACCATaaaattagcttttgttttgaactggtttataactttaaaatggatttgttgaattgatttttattttttttccccgttaTCACAGTAACTGGTATTTGTATTCTTCCTTTTTGATGATTGCaattttggggtgttttggtattgacttattttaaagtgtgtatTTTTCAGTGCCACTAGCAAACAGATTTGCAGAAATTTCCTAAACACTCCTATCTTCCCCATCTGTACAGAAAAACAGGAAGCTACACCCCGGTCTCACATTATTGGTTGAAGcgcaagaaaaaagaaaatgaaaaaaaacgaaCACTGTGACAGACCCATTGCGTTTACACTTGCTTCACGTTTAAATACTTGAATTCAATCTggttattaacatatttcaaATTCAATCGTAGATTCACCTTAGCACACTTTAATTAGAATCATGACATTTCAGGTCTTGTGGTTATGTTTGATCATATTCTTTCAGCTGTGAATATTGTCATGTTTACCATCTGAGACTTTCAGTTGTCtccctaataaaaaaaaaagatatatatatcagtgatgttgttatattttactTGAACTGTCTTTGTGTAAATATTGAGGCTCCCActgattttattgtaatttaattttgctgAGTATTAAGCACAAGTGTATTAACTATAGCAGATGAAAAAAGCAATCATGATTATTTCTTTTGTCAATCTGACTTTTTGTTCTGCCCTTTGTGAATAAAGACatcagatattttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54241 lncRNA downstream 36593 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 300330 14905385 ~ 14905621 (-) True G36714
TU54099 lncRNA downstream 324886 14880865 ~ 14881065 (-) True G36708
TU54076 lncRNA downstream 506998 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 553558 14652095 ~ 14652393 (-) True G36631
TU54472 lncRNA upstream 315824 15561722 ~ 15562078 (-) True G36967
TU54473 lncRNA upstream 316250 15562148 ~ 15562363 (-) True G36968
TU54475 lncRNA upstream 318200 15564098 ~ 15565262 (-) True G36969
TU54502 lncRNA upstream 457854 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 467777 15713675 ~ 15713975 (-) True G36986
XM_043239109.1 mRNA downstream 6114 15174388 ~ 15199837 (-) True parp8
XM_043239110.1 mRNA downstream 15306 15174388 ~ 15190645 (-) False parp8
XM_043238533.1 mRNA downstream 77779 15121996 ~ 15128172 (-) True isl1a
XM_043238532.1 mRNA downstream 77779 15122000 ~ 15128172 (-) False isl1a
XM_043240362.1 mRNA downstream 182495 15016899 ~ 15023456 (-) False fsta
XM_043239676.1 mRNA upstream 22778 15268676 ~ 15279272 (-) True golph3a
XM_043239960.1 mRNA upstream 34316 15280214 ~ 15292882 (-) True mtmr12
XM_043238862.1 mRNA upstream 47958 15293856 ~ 15308440 (-) True zfr
XM_043240656.1 mRNA upstream 104118 15350016 ~ 15367413 (-) False npr3
XM_043240654.1 mRNA upstream 104118 15350016 ~ 15367413 (-) True npr3
TU53907 other downstream 903570 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 1149246 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 1149246 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 1196415 14001934 ~ 14009536 (-) False tmprss13b
XR_006250970.1 other upstream 50120 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 104118 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 327213 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 327360 15573258 ~ 15574817 (-) False alkbh2
TU54499 other upstream 457854 15703752 ~ 15709388 (-) True cenpv

Expression Profile