RNA id: XM_043239722.1


Basic Information

Item Value
RNA id XM_043239722.1
length 2004
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC122345519
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11109781 ~ 11124349 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAAATGAGGAttcaactgtttaaaaaaaatgcggGTAAATCCCGTTCTGGTGTTATTTGGCATCTTACTAAGTGGACTCATTTTTTTGGGCTACAACACTAACTCATTTGGATACAAAGAGATAAGAATATGCATCAAtCTAACAAAAGAACATCAGGAAAACTCAAATTTTCAATCACCACAAGGGCTTCAATACAATCAGCCAGGTGTAGTCGGCCCGGATGGGAAAGTTATTGCTGTGACCCCATGGTTAGCCCCAATTGTATGGGAAGGACACTTTGATTCATTCCTGATTGATTCAATCGTTAAACCACAAAACATCACCATTGCAACTACAGTCTTCGCTCTGGGAAAATACACACAGTTCCTTAAAGATTTCCTGGAGTCCGCAGAGCTGAATTACTTTGTTGGGTTTCGTGTGCGTTATTATCTGTTCACCGATCATCCAGAACAGGTTCCTGAAGTGAAACTGGGTGAAGACCATCATCTTACAGTAATAAAAGTGGCCAGTTCTAACAGATGGCAGGAGATCAGTTTGAGCAGGATGGAAAGGCTGGAGAAACTAATCGAAAGTCGATTGATCAATGAAGCCAATTACGTTTTCAGCCTTGATGTGGACACAAAGTTCTACGGGCGATGGGGGGCGGAGTCTTTGGGTCGTCTCATAGGTGTGATACATCCTGGGTACTATCAAACGCCACGTGATCAGTTTCCATATGAACGCAGGCCAGAGTCTCAAGCGTTCATTTCCGCTGCCGAGGGGGATTATTATTATGGAGGAGCTGTCATCGGTGGCTCAGTGAAAGATGTATATCAGCTTGCTAAAACATGCCGGGAGCAGCTGGACATTGATAAAGGTAACCAAATCGAGGCGGCGTGGCAGGAAGAGTCTCATCTGAACAAGTACTTCCTGTATAACAAACCCAGCAAAGTGCTCTCGCCAGAATACCTGTGGCAGGACTTCAAACCTCACACAAACGAAGTCAAAATCATTCGCTTCTCACAAGTTATTAAAAACTATGCCGCAGTTCGTCCAAACCCATAATAACTGTTACATaactaaattatacatatttatgcaCTTTAAGTGTAATTGAAAACACCTGCCAGGCATGCAGGATTGATCGACTAACAATACCTGTggccaaatttttttttttttagacacaaTCCCCAGAAACAATCCTAAAACACATTTCCTGCAAGCTTCCCCATTGAACTTCCCTTTTGGTATATATATCATGCTGCTCTTTCGCCTATACCTAGATATACCATTAAAATATAACACGCAAATCAATACTATTAATACCACACTATGATGTCCTTAAACTAAAGTCAACTTAATCTAAGATAATGAAACCATAGTGTATGACAATCAagaataacactttatttagatATCAATGTAAAGCAATGATCACACTTGGAGAGCCCAGATATAGTTTTTTTCCATAACCGCTTAGTGCTGCTCATTGATCTGCAACGACTATCAACAAGTGTCAAAAACATACTACAAATATAACAGCTCTGTGGTCAGCCTATTTATGTACTGTGATGGAAAGAAATTCTAAGCTTATTTCCAAAACATATTATATCACTTTTATAACTATTTGAACTGATGCATTATTCATAGACAACCCGCACAGATACTCCCAATAATACACCCAAATACAACAGATAATAAATGCTTAAACATGACAGTAATGAAATCCAACCACAGTACTTCTGCAAAAAAGAAAgggaatgtaaaaaaaatgtttactgcgCACGAAAAACCAACAATGCTGAAAGATTTGAATGATGTTTTCCCCGACGCTGGGATTGTGTTTCTGTATAAAACAAATTCTGAATGTTTTGTGAGTTTGTGAgagattttctcattttattctcattttcgTTACTGtggattttgtttgtgtgttctgtttctgatgtatgtgttttgtaacttttttgttattttaaccaAGCCCTTGGTGTTGAAATAAAACCAGAAAAACAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51871 lncRNA upstream 98368 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 279193 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 301259 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 569935 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 783752 10333219 ~ 10333808 (+) True G35043
TU51912 lncRNA downstream 12703 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 12703 11137052 ~ 11147242 (+) True LOC122346180
TU51930 lncRNA downstream 62905 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 80151 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 81967 11206316 ~ 11208454 (+) True G35274
XM_043240116.1 mRNA upstream 18223 11090267 ~ 11099337 (+) False LOC122345703
XM_043240113.1 mRNA upstream 20245 11073890 ~ 11097315 (+) True LOC122345703
XM_043240866.1 mRNA downstream 2778 11127127 ~ 11136085 (+) True LOC122346179
XM_043240867.1 mRNA downstream 11874 11136223 ~ 11150225 (+) False LOC122346180
XM_043240869.1 mRNA downstream 11874 11136223 ~ 11150225 (+) False LOC122346180
XM_043240868.1 mRNA downstream 12737 11137086 ~ 11150225 (+) False LOC122346180
XM_043240870.1 mRNA downstream 12738 11137087 ~ 11150225 (+) False LOC122346180
XR_006251083.1 other upstream 55246 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 184397 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 386508 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 999434 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1318202 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 799879 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1124789 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1124789 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1389727 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1579022 12703371 ~ 12705241 (+) False iscu

Expression Profile