RNA id: XM_043239725.1


Basic Information

Item Value
RNA id XM_043239725.1
length 7264
RNA type mRNA
GC content 0.55
exon number 33
gene id LOC122345520
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31369810 ~ 31454508 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCTTAAGACGCGACCGAATCGACAACGACGACTGACGCGGTTTCTAGAGGATCAGCGCGGGTGTAAACGCGTCTTTCGGAGGTCTCCGGCGGAACGGAGCGACATATGAAGCGCGTCTTGAAGTTTTCGCGAGGAGGAAGGTCGGTGTTTGTATCTCCCTCGTTAAAGTCTCCGTGGATTGAGAAGAGACTTTTACCGCAGCGTGACACCGTGTATCATCGAGTGTGCGCGTCGTTGTATCGCCTGTGTCGTCGCGTTTGgaaacaatgaaacatttgCCGCATCTTCTCAGCGGATTTCTGAGGGACGGAGTGGCGTGTTGTGACACTTAGTTGCATGTTGGATTGTGTGTGCATGCTGTCTGCCGTGTAACATCGTAACATTCCCTCCGACTGCATGCTACTCGTGCGTGTCCGCCGTTAACGCCACCATGGGCCAAAACTCTGATAACCCCCCGATTCTCTCCTCCAAGAAGCGCCGCGGCTGCAAGCGTGACTCCGGCTCCGATCCGCGGCGAGACGTGGAGCGCCTCCGCGCGGCGTTAGAGGTGGAGCGCAGCCGAAACCAGCAGGCCCACCGGCGCTTCTCTCTGGAGCTGCGGAGGCAACGCGAGGAGGCCCGCGAGGAGAGGGAGCGAGCTCTGAGGGAGCTGACCTACAGACACGAGCAGCAGAAGACGCTGGAGCTGCTCAGGCAGCGGGAGACTCTGGGCCGGGAGCGCGCGGCGGAGGTCCGGCGTCTGCTGCGCTGGCGGAGTCAGGAGTTGAAACGTAGCGAGAACTTGACGCTCAGGCAAACCCAGGAAGTTCATCGCCAGCTAGCGGACGAGATCGCGGGCGGATCTGCCTTTCGAGGTCTCAAACCTGGATGCAACGGCAACGGGGCGGCGTATCGCAGACTCGAGGAACTCTTAAAGACTCTGCTTGCTAGGTCGGATGGACGGCAGGTCGCCGCGCTTCGGCGTCTCCAGCAGGAAGTGGAGTTAGAAAAGAGCTACTTCCTGTGCCACCTGCTGGAAGCGCATAGCGAGACGTCCCGCGTCGTGAAACTATCCAGACCGAGGTCGAAGAGTTGCGTGCATCCGCTCCCACAAGGAACGCTCGCTCTGTTCCGGTCTCGTTCGCTGTCCCAGACGTCCCGAAGCGATTCTTCTCAACctatgaagaagaaaaagaagcagGAGTGCGAAACGTCTCCTCTCAGCTCATCTCCGACCGAGGATGGAGATCTTCTAGAGGAGCCGTGCTCATCTGATGAAGGGTTGGAGAAGTGCTCACCGTACAGATGTTCAGAAGACAATATGGATGATCTGAATGGCAGGGACTACGGGTTCCTCGTGAGGCAGAACTCAGAGCTGCTTCGGGCGCTGGAGGAGATGGAGAAGTCCTGCAGCACTCTCAGAGAGGAGAACAGGATACTGAGGAAGAGCAGTTCTCCAGAGACGGAGGAGAAGGTGAAGAGGCTGAGGAAGAAGAACACCGAACTCGCCGTCATCGCCAAACGTCTGGAGGAGAGAGCGAGGAAACTACAGGAAGCCAACCTCAAAGTGGTGAACAGCCCGATGCCGGTGAAGGCGGGTGCTGTGGAGCAGTACAAGCGTGCGTTCGCCCGTCAGAGAGCCCGGGACCTGGCGCAGCACGCAGACACGCTGCTGTGTAAAGACAAACAGATCGCAGCGCTGCAGCACGAGTGCAGACAGCTGGAGACGCAGCTGGGACCGGCCAAGgGTCCTGTGGGAGTGGGTGAGTTTGAGCGTCTCCTGAAGGAGTCTCAGAAGGAGGTGTTACGTCTGCAGAGACAGCTGTCTGTCACCTCCACCAGAGACCAGAGCAGCTCCGCCACAGAAAACCCTTCAGAGAGCCAGGACCGAGACGCCAGGgttgcGTTTGAAACCCCGCCCACAGTAGTAGTAGATGAGGCCCCTGTTAAAGGGGAGGAGACTCCTGCAGAGGGGGAGGAGTCAGAAGCACAAGTGAAGCCTGAACAGGGCACAGGCTCCACCCACCAGGAAGAGCAGACCACAGAAGAGCGTCTTCAGTTGCTGGAAAGTGAGTTGGGCAAGAAGAGGAAAGAATGTGAAGTTCTTGAGCATGAGGTGCGGAAGAGACAGAAACGATGTCTCGATTTGgaGAACCAGCTAGTGGATGAGCGAAGCAGAAATGAGCACTTAGTGGAGGAGGCAGAACTCCTCAGGAGAAAGGCTCAGCTGCTCGACCAGTCGCAGGCTGAAAATGAGGAGCTAAAGGAACAGCTCTGTGTTTTGAACGCGCAGCATAGTTCAGTTCTGGAGGAGAACCAGCGACTCCGTGCAAAGCTGGAGAACCTAGAGCAGGTCCTAAAGCACATGCGAGAGGTCGCCGAGCGCAGGCAGCAGCTGGAACTGGAGCATGAGCAGGCACTTGCTATCCTCAAGTTCAAACAGGATGAAATCAAGCGACTCCAGCGGGCTCAGTTATTTGCTAAAAGAGAACATGAAGGGGTCGTGCAGATGCTGGAGGATCTGGTGCAGCTCGTATTGCACAGAGAGCTGGCAAAAGTTCGggagctggaggagaaatgCCGCAGTCAGAGCGAGCAGTTTGGGATGCTGTCACAGGAACTGGACAAATTCAGAGTTCAGGCCTCAAAGATTGACCTGTCGGGCCCCGGCCTGCTGTCCAGCCCCAGCCTGACCCAGCTGACCAATGGGGTCGTCCTGTCTGGTGAGACCGGCACAAACGCCTCATGGGAAGACATCGCGTTCTGGAGTTTGGAGGGTAATGAAGCCCTCTGTGACGCCTCTGAGCCTGATGTGGCTGCGGTTTTGCGGACGGGCTCCACTCCACACGCAGCTGAACTGTCTCGACCCGAACGCTCACCGACCGTCAAACACCGAGAGCTGCCTGCCATCAGTGTGAAGTCCGGCTCCACGTCCAGCCCTACGCCCCCCAGATCTGAGACCACTCACCTCTCACCCAAATCTGCTGGATCTCACCCGGCCAGCCCCCGAAAGGCCAGCCCTACACATGAGGTGGACACTGCTAGTGAAGTTGAGGAGCTGGATATTGATGTTTCTCCAACGCCGTATTTGGTCAGTAAAGGAGCAGCGAAACTCCAGGTCTTCATCGCGCGGTACAGttaCAATCCCTATGATGGTCCTAAtgataacccagaggtcgagtTGCCCCTCACAGCAGGAGAGTACATTTACGTCTATGGAGACATGGATGATGATGGCTTTTATGAGGGCGAGCTGATGGACGGCAGAAGAGGCCTCGTTCCCTCCAACTTTGTGGAGCGAGTGTCGGACGATGACTTCATGAGCTCACACCCTCACCAGGCCGGCGATATGTCCCATAATTCCTTCCAGGAGAGCAGCTTCCACAGCGGTAGTGAGCGGCTGCACCAACACCACTTACGCTTCGCCCACAGCGCCTCCGAGAGGACAGAGACCTCCACGACAGCCTCGGCTCCTCCTGACAATGCCAAAGCGAACCCCGCTAACCCTGCCCTGGCCGTCCCGCTCACCAACGGCTTAGACTTGGATCTAGAGGAGGTTGGGGTGGACACTGTGCCTTACCCCCGCAAGCTAGCACTAATCAAGCAGTTAGCCAAGAGTGTCATCATCGGCTGGGAGTCTCCGCTTGTCCCGGCCGGCTGGGGTTCTGTGTTTAGCTATAACGTCTACGTGGACCACGAGTTGCGACTCAATGTGCCATTTGGTACCCAAACGAAAGCCGTCCTGGAGAGGCTGGATTTGGCGCAGAAGGCGTATCGGATTGCGGTGCAGTGCCTGACGGAGCGAGGCAACTCGGATCAGCTGCGTTGCAGTGTGCTAGTCGGACGGGACGTGAGCGTAGCGCCGACTCACCTGCGCGTTGAACGCATAACGGCTACCTCAGCCAGCCTAACCTGGCTGCCTAGCAACAGTAACTATGTGCACATTGTGTCTTTGAACGACGAGGAGTGTGAGCTGGTAAAGGCGGGATGCTATTCACTGTGCCTCAGCAACCTCACACCTAACATGCAATATAACGTTAAAGTGGAGGCCAGGCCGCACCGCACAGCCTGGGAACTACCGCCGGAGTGCCGAGAACGCAAAACCACAGTGACCTCGTTCACAACCCTGACTGCAGGTCCTCCTGATGCTCCTCTGGATGTACAGTTGGAGCAGGGCCCATCTCCAGGAATAGCTCAGATAAGCTGGCTGCCTGTTACTATAGATGCCGCTGGGACGTCCAATGGTGTACGAGTCACTGGCTACACCATCTATGCTGACAAGAAGAAGGTATTAGAGGTGTCGTCACCCACAGCAGGCAGTGCTTTGATTGGTCCATCTCAGATCCAAACATTACAGGCGGCCCATGAGCTCACCGTGCGGACCATGTCAGCTTATGGTGAGTCGGTGGACTCATTGCCGGTGAATGTGCCCGCCAAATTGCCTGCCATCATGTCCGGTGCCTCATTGCCTCAATGCCAGTCTGTGCCAGCCACCGCCAGTGTCCTCACGGCCAGTGCCAACCCAGATCCTGCTGTCTGTGCCACATCTCTCTCTGCTGCCAAAATGCCCATTCTGCCACACTCTGCTACACTGGACGAACACGCCACTGGTCCTGTTCGGGGAGTCTATGTCAATACACCAAATGCAACCACTCGTGAGGCATCTCCTGCTTCCTATGTAGAAGCCTGGGCAAACCCAACATCAGCTCCATCCATGCCAGCACAGCAGGCACTTTCGCTATGTGCCTCACATACTAATTCAGCGGTGAGTGTATCTACACCCATGGTTACACCTGTACACTCGATCGTGCCTGTTTCTGTTGCTACACCAACATCCATGGCCGTACCTATTCCCTTGACCACACCGGGACCCATGCCAACATCAGTGTCCATGGTGGTGCCATGTCCTGTAGTCGTGCCGGCACCAACCACCATGCCTGTGTCCATGTCTGCGCCTATATCTGCACCTACACCTGCACCTATTGTTGTACCTGCATCAGTGTCAGCACAGTCCAGTGTGGCTCCCGCTGTGCAGAACCCaagcagagagacagacagcccAGGAGGCCTGCGACCTGTTGCCTCCCTCTCTGATTTCTTGGAGGACCCACGTGCCAAACTTCACACTCCACCACCACCCAGTACCACCTGCCCCAAAGTCAACATCCCAGGAAAGGACCCTCTTGATATCCCAGATACGCACCCACTGAGACCTCCCAATCCATCACCCTTTGAGTCAGAGCCTGAGGAGGACAGGGAAAACACCAGGCTTGTGTCCATTGAGGAGTTTCTGCGGCCTGTCCCTCAACCTCGAATAAAGGTCTATGCTGGTGGTCTTATGGATCCTCCCCCAGATTACCATGGGGAGAGCAGTCGGTCTGATCTGTCTGATATActggaagaagaggaggaagatcTGTACTCTGAACCTACCAATGACATCTGCAGAGGTTACAGTACAGCTCCTATGGGCAGGTCTGAAATGTGGGAGCCTGACAGCGATGAAGAAATTTTGGAGAGGATTATAAAGCTCCCCCCTCAAGCCTACCACAACAAGCAGCTCTTTAGCATCCCTGAAGtcacagaagaagaagacaaCACTGAATCTGAACCCCACACTAGGCCTTCTCCAGGCCGAACTACTTCTGGCAAGGGCCGCCAGAGTGGAAATGAGAGTCGCCGACATTCCCCTCACCATCATAATCAAGGACATAAAATGGAATCTGATTCATCTGTATTGAGGTACAAAGGGACTGCACCAGTCAGGACTAGACCTAGAGTGCACTATGCTGACACGGTGGACACCATCAACTATCTGGATGAGGAGGAGGTGGAGTTGGACTCTGACAGTAGCCTGTACGCTGGGCCTAGTTCTGTAAGTGTAGCTGCACGCCGCACACCACAAAAAGGCCATGGAGACCGACTCAGGAGAGAGGCCTTGCTTCGTAGCCAGATGACTTCAGGATCAGGGCAGGGAGCGTATTTACTTAGCAAGACCATACACCGTGTGAAATCACCCACTGGACCCTCAACAGAGATTGACGTAGAGTATGGAACCGATAATGATGAGGAGCCACAGCTGTTTGATCCTGGAGAAGTGGTGTTAGAACAAATGAGCTCGGAGTGGTGGGTTGAAGGTAGTAACAATGAGTACCACCATTTGCCCTCGACATGCAGACCCCAGCCAGAGCTGCCCCAAAGCAGCCGCTCATGGGAGGCAGCTGGAAGAGACGCATCGTTGGCAGATCCAGGTGCAGTGTGGTGCGATGTCACTCCAAAATCGACACGCTCTGAAATTAGACTACATAGAGAGCCCAGAGCATGTGGAGAAAATGAGGTGAGAGTCTTTGTTGCCCTCTTCCCGTACGATCCTGCAGTCATGTCACCCAATCCTGATGCCGCTGAAGAGGAGCTTCCTTTTAAAGAGGGACAGATTATCAAGGTTTATGGGGACAAAGATGCAGATGGTTTCTACCGAGGTGAGGCGGCTGGCCGTCGTGGCTATGTGCCGTGTAATATGGTTTCAGAGATCCAGGTTGATGATGAGGAGACCAGAGACCAGCTCCTGATGCAGGGCTTCCTCTCCACAGAGGCGTCCATGGAAAAGATAGACGCCCGCTTACATGCACAGCTTCCACGCCGCCCCGCTGCACCGCCGAAACCTAGACGCTCCAAGAAAGTGGAGTCGGCTGCGGTGTGGGACGACACgtccgctccggactcctccagTCAAGACCTCAGCCGCTCCGCCGGTCCGATGGGAAGCTCCAGACCTCGCAGGATGGTGGCCATCTTTGACTACGACCCCAGAGAGAGCTCTCCTAACGCAGACATAGAGGCCGAACTGACCTTCAGCGCGGGGGACATCATCTATGTGTTCGGAGACATGGACGACGACGGCTTCTATTACGGGGATCTAAACGGACAAAAAGGCCTTGTGCCGTCCAACTTCCTGCAAGCTTTTCCAGAGACGGAAGACGATGCTGCACGGACGGAGCACACGGTGACGGAGAGCCGCAGGGattcacagAAGCACAGGAGAGGTGTTCACTTTAAACAGTGACCGTAAGTGTTTCATAGACCTGACCCGACCTGCAGCAAACCCTCTCTAGCTTCTTAAGATCTAAAGACTCTGAGAGTCTGCATCATAGAATCAGTGCACATGCTTTAAAGAGTTAGCGTACTCAAAAAACTATGTTGTTtatgtcttcttcttcttcttcttttttttttttttaaacctgtctGGCTTTTCCCTGTGAGTTTTTAGTGTTTAAGTTGTC

Function

GO: NA

KEGG:

id description
K17591 RIMBP2; RIMS-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60460 lncRNA downstream 22787 31331349 ~ 31347023 (-) False LOC122344987
TU60456 lncRNA downstream 89379 31280177 ~ 31280431 (-) True G40842
TU60455 lncRNA downstream 96809 31272686 ~ 31273001 (-) True G40841
XR_006250951.1 lncRNA downstream 147553 31220884 ~ 31222257 (-) False LOC122344940
TU60429 lncRNA downstream 147616 31220817 ~ 31222194 (-) True LOC122344940
XR_006251025.1 lncRNA upstream 1992 31456500 ~ 31498094 (-) True LOC122345708
XR_006251024.1 lncRNA upstream 7426 31461934 ~ 31498094 (-) False LOC122345708
XR_006251026.1 lncRNA upstream 22883 31477391 ~ 31498094 (-) False LOC122345708
TU60767 lncRNA upstream 192350 31646858 ~ 31648612 (-) True G41034
TU60752 lncRNA upstream 201075 31655583 ~ 31701818 (-) True G41023
XM_043238678.1 mRNA downstream 19361 31346959 ~ 31350449 (-) False LOC122344987
XM_043238677.1 mRNA downstream 19361 31346959 ~ 31350449 (-) True LOC122344987
XM_043238259.1 mRNA downstream 172843 31191163 ~ 31196967 (-) True ca4a
XM_043238526.1 mRNA downstream 214697 31142577 ~ 31155113 (-) True gusb
XM_043238527.1 mRNA downstream 214827 31142577 ~ 31154983 (-) False gusb
XM_043240695.1 mRNA upstream 43981 31498489 ~ 31503030 (-) True hspb1
XM_043239952.1 mRNA upstream 51971 31506479 ~ 31567684 (-) True srrm3
XM_043239951.1 mRNA upstream 51971 31506479 ~ 31567681 (-) False srrm3
XM_043238268.1 mRNA upstream 114272 31568780 ~ 31590397 (-) False LOC122344718
XM_043238267.1 mRNA upstream 114272 31568780 ~ 31590393 (-) True LOC122344718
TU60335 other downstream 543452 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 543452 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 577091 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 673122 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 247945 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 266762 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 667776 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 759768 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 759784 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile