RNA id: XM_043239730.1


Basic Information

Item Value
RNA id XM_043239730.1
length 4735
RNA type mRNA
GC content 0.45
exon number 14
gene id stard8
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13066436 ~ 13107572 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCCTCCACAGTAAATCGGATCCCACTCTACTTCTCAGAGACGATTTGGTTAAACATGACTCTTCGCAATGGCCCTGTTTGgataaaaactgttttctgtttggacCTTTTGGAAATCTATAAGTGTATGTTGGCCTGAAGCAAACTTTAGGTGTTTGAATGGCTGTTGCAGGCACTTTTCTGTGTCCCCTAATGGTTAACCCGTAATGTTGGACCGCTGGAGTTTAAGTGATTAGGATGGAGAGGTCGTCTCCACAGCATCGGAAGGGTCACGagCTGGAGGCGAAGGAGGCCTGTGAATGGCTTCGAGCGGCGGGGTTTCCACAGTATGCTCAGCTCTATGAAGCCTCTCTGTTCCCCATTGAGATCTCTGCTGTGAGGAGAGACCATGAGTTTCTGGATCAAGACTCTCTCAAGGCATTATGCAGgaGGTTAACAACCCTGAACAAATGTGCTGCGATGAGCTTAGAGGTTCATTTCCAGTGTAAacagCAGAGTGAGGACTCAGAAGAGGATGACGCATGCGCCCTTAGTTCTCGCTGGGCGTTTCAGCGTGAGAGTAAAACTTGGTCCCGCCTCCGCACTCTCTCACCGACCCCTGTCCCTGCTGCCAACCGGGCCACGACCCTACGACCCTCAGGCAGTAGTGATAGCGTGCTGAGTGACATTAGTCTCCTAGAAGTCACCTCGCTGACCTCCGACCTCAGTGCTAGCAGCTTAAGCTTAGACAGTGCTCGGGAAACAACTTCTCCAGAGGTTGCAGCTTTCAGTGACGTCACAGTGGATGAGGGTGCATTGTCAGTTTGCGTCTCAACTGGCCAAGATGACAACGATGACACCGGATCCTCATCTTCCTTGCCATCCGTAAGAGAGAAGCCAAAGCGTCCTTCTAGATCATTTTTACGGAGGAAAGAATCGATAAAGAAACGAgactgtgagagagagatggccCCAAGGAACATTTCAATGGTGACTCAACACAAGGCACCCTCAGGTCTGCACTGTACATCTGATGCAAGTTTGCCTGGCCAAACCACAAATAAGTGCAGAATTGCCAAAGATATGGCATGGAGGTCACATACAATATGCCGCAGTAACGTTAGCCAGAAAGACACTCTGCACAAGCCTCACAGAGCATGCCTCTACCTGGAAGACTACCAGTTAACTTGGGAGATGCCCAAGTTAACCAGTCAAAACAGCTGTCAGAGGAAAGAAGGTCGTGTGATCCACCTCCCCTTTGACCACAAGCCTGGAACTTTCCCCAAGTCTCTCTCAATCGAAAGTCTCTGTCCACTCTCTGTTAATCAAAGTCCTGACCATATTGACTGGGCTGGAGATGATGTAGACCTGTCCTTGGATGGAAGCATCAGTCACAGTGGGTCGCAAGACTTTCTCTCAGGTTTCGGGAGGAGAAGGAACTCTTTGAGCTCTATTGGAAGCATTTACGACAATGTTCCTGAGACACCAGGCAGTCCATGTGACATATTTGACCCTGGAAAAGAGAAAGCCTTCCAGCATCTGGATGACATTCTACAGCATGTTCATGGGCTGCAGCATAACATTGACGAATGGTCACGCTCGCTTGGCATTCAACCACAGGACCAATCAAATGAAGAAACTGAATCCACGGCTGACACAACGTTACTCAGCAGTCTGAATTACGATGAGCAATCCATGTCGGATGTTGGGACAACCGTGAGTGATTATGATAGTCCAGGAAACTCTGTGAATGAAGGAGAAGGAGGAATGAGAGAAAGGAGGGACTCAGGGGTGGGGGCATCACTCACAAGACCCAGCAGAAAGTTGCGCTGGCATAGTTTCCAGAACTCTCATCGTCCAAGCGTGACCTCAGCATCTTTAGAAATCAACAGGCAGTCAGCTGCTCAGCTCAATCTTCTGCAGAAATTCAGCCTTTTACGACTGACCGCCATTctagagaaacacacagacaccacCAAACACGGCTGGAACTGGGTGGTTCCAAAGTTTATGAAGCGTTCCAAAGTTCCAGATTACAAAGATAAACATGTGTTTGGAGTGCCGCCGATTGTAAATGTCCAGCGAACTGGTCAGCCTCTGCCTCAGAGCATCCAGCAAGCGATGAGATACCTGCGCAGCCAGTGTCTAGAGAAGGTGGGATTATTCCGCAAATCAGGGGTTAAATCCCGAATACAGGCCCTCAGGCAGCTCAATGAGAATTCCCCTGATCATGTGACCTACCAGGGCCAATCTGCTTACGATGTGGCTGACCTgattaaacagtattttaggGATCTGCCTGAACCCGCACTCACCTCCAAACTTACAGACACTTTTCTACATGTGTACCAGTTTGTTCCAGCAGAGCAGCGTTTACAGGCCGTGCAGGCAGCCGTGATCCTGCTGCCAGATGAGAACAGAGAGGTTCTACAGACGTTGATCTTTTTCCTCAGTGACATTGCATCTGCACAGGAAAACCAGATGACTGCGGAGAGTCTAGCTGTCTGTCTCGCACCCTCCATACTGCACCTGAATGCCTCCAAGAAAGATGGAGCTTCACCGAGGCTCATAAGCAGGAAGGGTGGAGCAAAGCCAGACCACAAGGACCTGAGTGAGAACATGGCTGCCACACACTGCCTTAGTCACATGATCACAGAATGCAAGAAGCTATTCCAGATCCCGCATGAAATGATGCTTCAGTCTAGGAATTCTTATGTGGCTGCTGACGCTCAGCCACTGCCTCTGCACGGGCTCGGGGTAAACGCCCTGGGCGAGCCTGTGGATTATCGGGCGTACCTAGAAGACAATGTTCAGTGTCTTCTCAAAGAGGCATCTGAGAGGAGTAAAGGCTGGCACCATGCCCACGGACCTGACAACACTGAGCTGGCTTATAAAaagGTAGGAGACGGGCACCCAATGCGTCTGTGGCGTGTTTCGGTGGAGATAGAGGCCCCGCCGGCTGTGGTGCTGCAGCGTGTTCTGCGAGAGCGCCACCTGTGGGATGAAGACCTACTACACAGTCGAGTCATTGAGACTTTGGAAAACAACACAGAGGTTTTCCATTACATCACAGACAGCATGGCTCCACATCCTCGTAGAAACTTCATAGTGCTCAGACGCTGGTGTAGTGATCTACCAAAAGGCGTGTGTGTTCTAGTGTCATCTTCTGTGGACCATGATAATGTCCAGCTGGAGGCAGGATTACGGGCTGTGCTTTTGACATCACGCATCTTTATTGAGCCATGTGGAATGGGCCGGTCCCGGCTCACACATTACTGCAGAGCTGACCTACGGGGACGATCTCCTGATTGGTATAATAAAGTGTTTGGCCATCTGTGTGCAATGGAGGTTGCAAGAATACGCAGTTCTTTTCCTGTTTTGTCAGCACGAGGACCTGAGACCAAACTCTGAACCCACTTTGGTTAAATCTAAgactatttttttatgataaagaatgaaaataatgagAGCACAGGTGCAAAATCAAGATGGCCTCGCAAGTCAGAAGGTGGAAGAAGTAGAGAATGTTTTTAACTGGATTATTAATGAGTTtgggaatgaatgaaaaaagacaGTGCTGTGTAGAATAGTAGTTGGactatgcaaaaaaacaaaccggTTGTGGTTTTTAAAGCCGTGGATGATTAATGTGAAAAAGCTCAAGATCACAATCATACTGTTGACATTGCGACTAACGTCTATGCGTGTTTCGTTGTGTGAGCctgtatatttgtttgtgttaagCAACGTGTCTTGGTAGACATTTGATGCCTTAAATTCTTTGTCTAATAATCTGGTGTGGACTGTCAGACAGCTCATTCATTCTCAgggtaaatgtaaaaattaaacagtttttttttttttttttggtttgttttttaattgcacaAGAATTTTGCCATGTGGCACTGATACTGACCAGCCAGCAAAGAGAAACAGCCAATCACCAAACATGTGTAACATCATAAGAACGGGGTCTGTTGTTATAAGCTTCCTGTATACTTTGCATTTATCAGTCTGACATGACAGACGACTCGTAGAGACTCTGTGGTGCTGTTCAGTAAAATTGACACCCTCTCCACTGATACAGTATAGTTGTATTTGTGACCTCAATCCCTTTCTTCCTTTTCTCCCAccctctttttatttatttatttgcattagcCATTTGCATTTGGCAAACTTCCTTTGTGAAGTTTTAATAACTTAAGGTCTGCATGGAATCCATGGGAATGATATTCAAAAGACTTTAATAcagctttacttttttaattttacatttctattttctataaaggtaaagaacatttttatgttataattagATAATTCACTTTCCTATTACTGTTCTTAATTGTGCCTTTGAGCAACTAAAGAgaaaactgtgtgtttgtcatTTGTCTTATATTTGTCATTAAATCTGTGCTTTTCACCAGggcattatgtaatattaatattttatttatttaaaagtataactGCATGTATGTTGTTTTAAGCATTCTGCCTCAAAGTGAAATGGTTCAAGTGCCACAATGTGGTTATGTGTGCCTTTTGTGATGTACAGAACTCCATTTacctatattgtttatttcattgtgtgttttttttgttttttttttcagataattcAGTGTTAAACACGTGTCATTTTCTAATAACgcagatttgatttatttcaatttcaattgtACTCTGTGTATCGTGCCAATTTAGCCCCcagtgcaattaaaataaataaagtttcagtcattg

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52892 lncRNA upstream 190435 12885331 ~ 12885934 (+) True G35905
TU52891 lncRNA upstream 191085 12885005 ~ 12885284 (+) True G35904
TU52890 lncRNA upstream 193857 12882260 ~ 12882512 (+) True G35903
TU52809 lncRNA upstream 307819 12767948 ~ 12768550 (+) True G35847
TU52801 lncRNA upstream 423086 12650021 ~ 12653283 (+) False G35843
TU53143 lncRNA downstream 1060 13108632 ~ 13108853 (+) True G36062
XR_006251001.1 lncRNA downstream 192183 13299755 ~ 13312652 (+) True LOC122345423
TU53187 lncRNA downstream 192237 13299809 ~ 13311692 (+) False LOC122345423
TU53198 lncRNA downstream 204489 13312061 ~ 13312385 (+) False LOC122345423
TU53205 lncRNA downstream 216461 13324033 ~ 13324383 (+) True G36109
XM_043240839.1 mRNA upstream 20009 13051667 ~ 13056360 (+) True yipf6
XM_043239668.1 mRNA upstream 53596 12965936 ~ 13022773 (+) True ar
XM_043239686.1 mRNA upstream 141217 12930223 ~ 12935152 (+) False ch25hl3
XM_043238327.1 mRNA downstream 44049 13151621 ~ 13157237 (+) True steep1
XM_043238511.1 mRNA downstream 227183 13334755 ~ 13338138 (+) True nalf2
XM_043240760.1 mRNA downstream 234574 13342146 ~ 13372469 (+) False eda
XM_043240759.1 mRNA downstream 234577 13342149 ~ 13372469 (+) True eda
XM_043240761.1 mRNA downstream 234577 13342149 ~ 13372469 (+) False eda
XR_006251084.1 other upstream 269153 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 371128 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 560261 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 820697 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 876525 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1182848 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1192471 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 1192471 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1539917 14647489 ~ 14651911 (+) False fgf5

Expression Profile