RNA id: XM_043239782.1


Basic Information

Item Value
RNA id XM_043239782.1
length 1858
RNA type mRNA
GC content 0.46
exon number 14
gene id kat5a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11204478 ~ 11209441 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttagcCTTATTGCTGAAATAATTGTATCAGTTAGTTGGTGCGTCACTCAAGGCAAAATAAACGCGACTGGCGTTCTACTGTAGCGCGCTCTTCTGTGCGCCTGAGAAAAAAAGATGGCGGATCACTCGGTTGAGATCACAGAGGGCTGTCGACTTCCCGTCCTGcgaaaaaatcaagaaaatgaAGACGAATGGCCTTTGGCAGAAATTCTCAGTGTCAAAGACATCTCTGGAAAAAAGCTCTACTATGTCCACTATATTGACTtcaATAAGCGTCTGGATGAATGGGTTACTCCAGACCGACTGGATATTAAGAAGCTCCAGTTTCCCAAGAAGGAGGCAAAGACTCCTATGAAGAATGGGCTGCCTGGGTCTCGCCCGAGCTCCCCAGAGAGAGACGTGAAAAGGAAAGCAGAGTCAGTCTCTTTGGCCACGCAAGTGACCGCAGCGACTCCAGTTCCTTCACTTCCTGCTTCTGCAGAAGCAAGTCAGGCCTCTGTCTATCCGGCGATGAGAGATTCCTCTTTCAGCATTAAATCCAGAGACGAGCACGAACCGCTCGCCTCTCTCACCACAAATGGCACATCATCCATCCAGCGTCATCACATTCCTCCTCAGCctgggagaaaaagaaaaagttgcgGAGGGACAGATGAGATGGTAAAGATGTTCCAGAATAACAGCCCTCGCTGCTCCACCGTCTATTTGCTGCCAGGAGAGGACTCTCAGGACAGTTCAGATGGAATCCCATCTGCCCCACGCATGACCGGCAGCTTGGTGTCCGACCGCAGTCACGATGACATTGTGACACGAATGAAGAACATAGACTGTATTGAGCTGGGCCGGCACAGACTGAAGCCTTGGTACTTCTCTCCGTACCCACAGGAGCTCACTTCTCTGCCCATTCTCTACCTCTGTGAATTCTGTCTCAAATACCTCAAGAGCCTCAAATGTCTCCAAAGACACTTGACGAAATGCAATCTGCGGCATCCACCAGGAAATGAGATCTACCTCAAAGGAACCATCTCCTTTTTCGAAATAGATGGCAGAAAAAACAAGGCATATTCCcaaaatttgtgtttattgGCCAAATGCTTCCTGGACCACAAGACCCTGTACTACGACACAGATCCTTTCCTCTTCTACGTTATGACGGAATATGACTCAAAGGGTTTTCATATAGTTGGCTACTTCTCAAAGGAGAAGGAATCAACAGAAGACTATAATGTGGCCTGTATCCTGACATTGCCACCTTATCAGAGAAGAGGCTATGGCAAACTACTAATTGAATTCAGTTATGAGCTCTCCAAGGTGGAAGGAAAAACAGGCACTCCAGAGAAACCTCTGTCTGATTTGGGCCTGCTCTCGTACCGTTCATACTGGTCCCAGACCATTTTGGAGATACTCATGGACCTCAAATCAGAGAATGGAGAGCGGCCACAGATCACCATCAATGAAATAAGCGAGATCACAAGTGTCAAGAAGGAGGATGTGATCTCAACTCTTCAATACCTCAACCTCATCAATTACTACAAGGGTCAATATATCCTCACCTTGTCTGAGGATATAGTGGACGGTCATGAGCGTGCCATGCAGAAACGCCACCTTCGTATTGATCCCAAATGCTTGCATTTCACTCCTAAAGACTGGAGCAAGAGGGGCAAGTGGTGAGGTGCAAAGGGGGTCCGCTAGCtcacagatacagacagacaggaatTAAAACCaacataaatactgtaaatggtCTTGCATTTATGTACttttatggtttttatataAAGCACTTGTCTAAAAATATCGAGCCACCtcaaaaatgtaactaaatgtGATGTGTAAATAAACAGTCTGTTTGTACTGTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52251 lncRNA downstream 53706 11145973 ~ 11150772 (-) False G35479
TU52249 lncRNA downstream 53706 11148978 ~ 11150772 (-) False G35479
TU52254 lncRNA downstream 53706 11148978 ~ 11150772 (-) True G35479
TU52205 lncRNA downstream 80131 11102653 ~ 11124347 (-) True G35441
TU52280 lncRNA upstream 2599 11212039 ~ 11213737 (-) True G35501
TU52278 lncRNA upstream 10528 11219968 ~ 11220891 (-) True G35499
TU52216 lncRNA upstream 39759 11249199 ~ 11250006 (-) True G35450
TU52196 lncRNA upstream 94841 11304281 ~ 11330366 (-) False G35434
TU52305 lncRNA upstream 102109 11311549 ~ 11312830 (-) True G35522
XM_043238519.1 mRNA downstream 7274 11193469 ~ 11197204 (-) False gjb1a
XM_043238517.1 mRNA downstream 8639 11193469 ~ 11195839 (-) True gjb1a
XM_043239712.1 mRNA downstream 12220 11189333 ~ 11192258 (-) True gja2
XM_043238145.1 mRNA downstream 133709 11064771 ~ 11070769 (-) True ercc6l
XM_043239734.1 mRNA downstream 185636 11013727 ~ 11018842 (-) True ctdnep1a
XM_043238869.1 mRNA upstream 121549 11330989 ~ 11336101 (-) True si:dkey-125i10.3
XM_043238871.1 mRNA upstream 128426 11337866 ~ 11345096 (-) True agtr2
XM_043238873.1 mRNA upstream 128426 11337866 ~ 11345013 (-) False agtr2
XM_043238872.1 mRNA upstream 128426 11337866 ~ 11344998 (-) False agtr2
XM_043238868.1 mRNA upstream 139188 11348628 ~ 11361935 (-) False tpcn1
TU52116 other downstream 278315 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 330414 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 742769 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 869136 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1801855 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 210515 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 254391 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 374340 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 591874 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 955970 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile