RNA id: XM_043239783.1


Basic Information

Item Value
RNA id XM_043239783.1
length 1593
RNA type mRNA
GC content 0.44
exon number 9
gene id ankra2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6096157 ~ 6099701 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTGCCTTcgaaaaaactttatttacacTCTACCTCAAGAACAACCCGTCGTTTCAAAACAAACGATATCAATAACTCGgtacaaaaaaaaaagcttcgtTCTGCATGTGACCTAAACACCGTCCACTTACTGTAAGGGTCTGATCCTATTTAAAGGCTGTAGTAGCTTCTTTTGGAAGATCACGGATCCCAAGCGGCGAATGGCATCGGAGGAGATGGAGGGTTTGTGCCCTTTACCAGAGGTGACGGGCATCAAGGTGGAGCCGTCGGTCAGCATTGGCTCAGGAGAAGATGCCAACTCGCACAACGCCATGGGCATAAAGTTCATACTACCCAACCGCTTCGACATGAACGTGTGTTCGCGCTTTGTGAAGTCGCTGAACGAGGAAGACAGTAAAAACATCCAGGACCAGGTGAACTCCGATCTTGAGGTGGCCTCCGTGTTATTTAAAGCGGAGTGTAATATCCAGACGTCTCCCTCACCTGGTATTCAGGTTAGGCACGTTTACACGCCATCAACCACCAAGCACTTCTCTCCAATAAAGCAGTCCACCACGCTCACCAACAAACACCGTGGAAACGAGGTCTCATCCACACCGCTGCTCGTCCACTCACTGTCTATACATCAGCTGGCAGCGCAAGGAGAGATGGTGTTCTTAGCCAGTCGAATAGAACAAGAGTCTGTGATAAACCTGCAGGATGAAGAGGGATTCACCCCACTGATGTGGGCGGCAGCTCACGGACAGATCGCTGTGGTCGAGTTCCTGTTACAGAGTGGTGCGGATCCTCTCCTCTTGGCCAAGGGAAGGGAAAGCGCACTGTCCCTGGCCTGCAGTAAAGGGTACACGGATATCGTCAGAATGCTTATCGACTGTGGAGTTGACGTTAACGAGTATGATTGGAATGGCGGAGCACCGCTGCTCTATGCGGTGCATGGTAATCACGTTCGCTGTGTGGAAATCCTCTTAGAGAGTGGGGCCGACCCAACCATGGAGTCAGACTCTGGCTTCAATGCTATGGATATGGCTGTGGCGATGGGACACCGAAACGTCCAACAGGTATTAGAGGGTCATCTCCTGAAGCTTCTGCAAGGCATCAAAGAATAACCATAGCAACAAGAAGAATCTGAGTGAATATTTGAGTGTTGATTATGATGAAGGGAATGCCATTTAACGTTTGCTGAATActttatatgaatttttttttttttaaatctatcttTAAAGAAGCCAATGCACAGAGCAACATGACAATTGACGAGATCAGAACTTCAGCGTTTTGAAcctactgatttttttttttttattcaatgtgAAGTGTGTTATTAGGTCACTGATTTCTACCTAGTTACAATGTGTATTtgaaaagatatttattttgccatttaaagcaaaaaaaataagctgTTTCACATTAAACTTGACTGGCGTTATGGtttataaattaagtaaatcTAAATCTGGGCACTTTAGAATTAATCACGTGGAAAAGAacaggatgaaaaaaaatcagtacCAGTTCAGCTGTCACACTTATTGCCATTTTGTCCAGTTGTGCTACAACACTGTAAATAAACCTTAATTTATACTGAA

Function

GO: NA

KEGG:

id description
K21486 ANKRA2; ankyrin repeat family A protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49440 lncRNA downstream 113354 5969242 ~ 5982803 (-) False G33549
TU49443 lncRNA downstream 113354 5970748 ~ 5982803 (-) False G33549
TU49446 lncRNA downstream 113354 5980317 ~ 5982803 (-) False G33549
TU49448 lncRNA downstream 115275 5974699 ~ 5980882 (-) True G33549
TU49429 lncRNA downstream 136944 5953276 ~ 5959213 (-) True G33544
TU49536 lncRNA upstream 72478 6172144 ~ 6172412 (-) True G33610
TU49538 lncRNA upstream 74181 6173847 ~ 6174113 (-) True G33612
TU49541 lncRNA upstream 78506 6178172 ~ 6178671 (-) True G33615
TU49626 lncRNA upstream 509783 6609449 ~ 6611442 (-) False G33681
TU49627 lncRNA upstream 509783 6609449 ~ 6611492 (-) True G33681
XM_043238540.1 mRNA downstream 6601 6086801 ~ 6089556 (-) True foxd1
XM_043238326.1 mRNA downstream 186166 5898895 ~ 5909991 (-) True slc6a4b
XM_043240904.1 mRNA downstream 211993 5859279 ~ 5884164 (-) True git2a
XM_043240923.1 mRNA downstream 246518 5843678 ~ 5849639 (-) True gltpa
XM_043239675.1 mRNA downstream 253164 5820352 ~ 5842993 (-) False trpv4
XM_043239699.1 mRNA upstream 132600 6232266 ~ 6243818 (-) True enc1
XM_043239279.1 mRNA upstream 155752 6255418 ~ 6263302 (-) True gfm2
XM_043238967.1 mRNA upstream 166071 6265737 ~ 6281395 (-) True aif1l
XM_043238966.1 mRNA upstream 183108 6282774 ~ 6343615 (-) True lamc3
XM_043238323.1 mRNA upstream 663470 6763136 ~ 6792026 (-) False ttll11
unassigned_transcript_954 other downstream 139786 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 664763 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1473099 4622490 ~ 4623058 (-) True G33175
TU48822 other downstream 1903076 4144927 ~ 4193081 (-) False LOC122346168
TU49743 other upstream 724505 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 823764 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 831206 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1022056 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 1022673 7122339 ~ 7122464 (-) True LOC122346223

Expression Profile