RNA id: XM_043239809.1


Basic Information

Item Value
RNA id XM_043239809.1
length 1487
RNA type mRNA
GC content 0.42
exon number 7
gene id chmp1b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11439109 ~ 11442421 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAGTTGTTTGGAGAAGCCGGAAGTGAATACAGGAAAATTGCAACAAACAGAGCGGGGAGCAGTTAGTGATCTACGCGAAGAGCTTGGCGAAGACTTGACTGAAAACTACTGCCGTCTAATCGTTACATTTCTTCAAGAAGCAGCAGCCAGCAGCCGAACCGGTTTGTTATGCCTAACATGGAAAAGAATTTGTTTAACCTCAAGTTTGCAGCCAAAGAACTTCAGCGTAGCTCCAAGAAATGCGACAAAGAAGAGAAAGCAGAGAAGGCCAAGGTCAAGAAGGCAATCCAGAAGGGCAATATGGAGGTTGCCCGGATACATGCTGAAAATGCCATTCGCCAGAAGAACCAATCAGTGAACTTCCTCAGAATGAGCGCAAGAGTGGATGCGGTTGCCGCACGAGTACAGACAGCAGTCACCATGAACCAGgTCACCAAATCTATGGCTGGGGTGGTGAAGGGAATGGATGCAACTCTGAAGAGCATGAACCTTGAGAAGatttcCGCTCTAATGGATAAATTTGAGCGTCAATTTGAAACTCTGGACGTACAGACGGCTCAGATGGAAGACACAATGAGCAGCACCACAACACTCACTACACCACAGGGTCAAGTTGATTCTCTGATGATGGAAATGGCGGATGAGGCCGGgCTGGACCTCAACATGGAGCTTCCTCAAGGTCAGACAGGATCAGTGGGAACCAGTGTAGCATCTGCAGAACAgGATGAGCTCTCTCAGAGACTGGCCAAACTCAGAGACCAGGTTTAAGGAGAACTgggtgtgtgcgtatgtgtgtgaaagagagagattgtgtATATGCAAGTTTGTAAGAAACATATCCCCCGTTTACTGACCCCTGGAAATATTGGCctcattgtttatttgtttagtttagttttctttttatgctgTTGAGGATGGGTGTGCAGCTTTCATTATCCACATTAACACGCAGGAAACACAATTAGTCAAAATGTAAAGGCAAATATTACATGGGAACACTGCTGACGTAATTTTGTGGCCCTGCTCAGTAATAACTGAATTAAAGATTTATTAGACATTTCTTTGTAAGAGtgcattcatgttttattaCCAGCTTGTCTTTCGTATAGCTTTTATGCCAGTGTAGCTATATTAACCTACACCAGCGTTGATATCAGACAAAGGTTGAGTGAAATTGTGACTTCTGTTTCTTCCTGCTGCACACATGGTTTGCCTCTGCTTCGATGGATTGTGGGAATATCTAACTTTAAATGCATGTGATCAAGGTGATGATTTGAATAAAGTCTCATCATTTTGTCCAAAGCAGTAAAATCCCCAGTTTATCAGATTATTTATGTCTTATGTCTTTAGAGAAATACTGATctttatgttcatttaatttattttggttcatccaaaatgtaaaaaaaaatgcttgtcaAATGATCAGCTGGcaacatatatatgtttgtgtgtatataaataaacattttgcaaatTCTG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 108743 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 108743 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 126279 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 189103 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 218218 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 228536 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 250129 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 253770 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 255527 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 255527 11697948 ~ 11699511 (-) False G35599
XM_043239806.1 mRNA downstream 2837 11431860 ~ 11436272 (-) True cnga2b
XM_043239802.1 mRNA downstream 8049 11412416 ~ 11431060 (-) False LOC122345557
XM_043239801.1 mRNA downstream 8050 11412416 ~ 11431059 (-) True LOC122345557
XM_043239807.1 mRNA downstream 26762 11403003 ~ 11412347 (-) True zdhhc15a
XM_043240381.1 mRNA downstream 39502 11389320 ~ 11399607 (-) True nexmifa
XM_043239803.1 mRNA upstream 201 11442622 ~ 11462761 (-) True brwd3
XM_043239804.1 mRNA upstream 201 11442622 ~ 11462759 (-) False brwd3
XM_043240838.1 mRNA upstream 21442 11463863 ~ 11467122 (-) False hmgn7
XM_043238212.1 mRNA upstream 77154 11519575 ~ 11526037 (-) False radx
XM_043238210.1 mRNA upstream 77154 11519575 ~ 11526016 (-) False radx
TU52116 other downstream 512946 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 565045 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 977400 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 1103767 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 2036486 9337828 ~ 9402623 (-) True G34789
TU52322 other upstream 21410 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 141359 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 358893 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 722989 12165410 ~ 12169327 (-) False sh2d1aa
TU52745 other upstream 875382 12317803 ~ 12319685 (-) True G35825

Expression Profile