RNA id: XM_043239815.1


Basic Information

Item Value
RNA id XM_043239815.1
length 4716
RNA type mRNA
GC content 0.47
exon number 36
gene id pnpla7b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10533187 ~ 10546933 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTTTGGAAGGATCTGGCAACGCGTGTAATCGGTAGGAGTACTGACATTGTGAATGGAATCCCTGGGAGACTCCAAAGTGCATTAAGAGTGCCAAAAACAGTTTGGAAACGCCGTTCAGAAGATATGGAAGAAAAAGAACAAGATgatatatgcagtatatttcCGGCAGTGCTGCCATCTGGGACTGAGATCAAGGCTCGAGTGCAGCACTTCATAGAGGATCAGTTACAGAGTACCATGtgGACTGGTGTGCTGATTGGAGCTGCTGTTGCGGTTTCGTTCATTAGTATTGTTGCCTTTTTTCTGCACAGAAGATACAAATTGGGAGAAGAGCAAGCTGAAGGTCCTAAATACCGTTTTAGAAAAAGAGACAAAGTGATGTTTTATGGCAGGAAGATAATGAGAAAGGTCCAGACCTTATCCTCACCAGCCACCTCAGGTCCGGTATCTCAAAAGCGattcagaaaaagaacaaaagttcTATCAATAGCTCGCAAAATTCTACGCATACGAAGAGAGCCACCAGCCCTGCAGCCAAAAGAGCCTCCGCCTTCGCTCTTGGAAGCAGATTTGACTGAATTCGACATGCAGAACTCCCACCTGCCCTCTGAGGTCCTGTATATGCTGAAAAACGTGAGGGTTCTGGGTCACTTTGAAAAGCCTCTGTTCCTGGAGCTGTGTCGGCACATGGTGTTTGTGCAGCTACAGCAAGGGGAAGGATTATTTCGCCCAGGAGACACTGATGACAGCATCTTTGTAGTGCAGGATGGGCGTCTTGATCTGTGTATCCATGAGAATGATGGGACTGAGGTTGTGGTGAAGCATGTTTTGCCTGGAGACAGTGTTCACAGTCTGCTCAGCATCCTCGATGTCATCACTGGATATCCAGCTCCCTACAAAACTGTCTCAGCCAGAGCAGCAGCCCCAACTACTGTTCTCCGCCTTCCTGCACAGGCTTTCCAGTCCGTCTTTGAAAAATACCCAGAGACCCTAGTCAGAGTTATTCAGataaTCATGGTGCGTCTTCAGAGAGTTACCTTTCTTGCCCTTCACAACTATCTAGGCCTGACCACGGAACTTTTCAATAAGGAAAGTCAAGCTGTTCCGCTGGTCTCAGTGGCCAGTGCTGTAGGAGAAGGCGCTCCAGGCAAAGGGCTGCGCAGACACTCGCAGACAACTGAGGACGTTTCTGAAAAGGTCCAGCAAAGGTCAACAGACCGTTACAGTGACACAAGAGGAGAGgatgcttGGAAGCATCGCACAGAAAGTCCTACTGCTTTATTCAGAAAGTCTCGTTCACTGTCAACAccttttgacggcacccatgCTGGTTCTCCTGACCGCAATATGGCCTTTGACAGAGCAAGCATTACGAAAGAGGAAGCCCCTACAAGTCCTATTGCCGTTCCTAAATACGTAAGGAAGAAGTCGGTGACAATGCAGCATTCTCCTTCGGCTGTGTTTCACTACTCAGACACTGGGGGGCATTCCAGCCACATCCACCATTGTAAAGTTAATGCCATTTTTCAAGCTGCCAAGAAGGACTTGCTTAAAATCATTCAGCTTCAGGACACCAGTCTTCTGGAAGATAGGGTGACTCTGAGACAAGTAAAAGCGGGCTCTATCGTTGCAAGCGAGGGAGATCAGGATGTGAGCGTGCAGTTTGTCATCTCAGGAACTCTCCATGTGTACCAGAGACTGATTGACAGAGAGGAAGAAACATGTCTTTTTGTGGCTCACCCTGGAGAGATGGTGGGCCACCTGGCTGTTCTCACAGGAGAGCCTCTCATCTTTTCTGTGCGTGCCCACCGTGACTGCTGCTTCCTGTCTATCTCCAAAACACACTTCTATGAGATAATGCGTGCCGAGCCTAGGATGGTATTAAATGTGGCTCACACAGTGGTACGGAGGGTCTCTTCCTTTGTCCGACAGATTGACTTTGCTCTGGACTGGATGGCACTGGAGGCCGGTAGGGCTGTCTATAGACAGGGAGATAAGTCAGATAGCACTTTCATTGTCCTGAGTGGACGTCTGCGTTCCGTCATCATGAAGGATGATGGGAAAAAAGAGCTTGCTGGAGAGTATGGTCGGGGGGATCTCATTGGTGTGGTGGAAGCTTTGACTCATTTAAACAGAGCAACCACAGTCCATGCAGTCCGGGACTCTGAACTGGCCAAACTGCCCGAAGGAGCTCTTAACTCTATTAAGAGGAAATACCCACAGGTTGTGACTCGCCTGATTCATCTTCTTGGGCAGAAAATCTTGGGCAACATGCAGCAAGTGAATGGTCCACTATCAGTGCGCAGTCTGGGTTTTCACACCCCAAGCAGTAAGTGGGACGCAGGTAACCCAGCTGCCAATCTGTCTACGGTCGCCATACTGCCTGTTTCTGAGGAGGTGCCTTTGACTGCCTTCACACTGGAGCTGCAGCATGCTCTCAGTGCTATTGGCCCCACTTTGCTCCTAACCAGTGACATCATCAGACAGCGCCTGGGTGTTGCAGCCTTGGATAGTGTTCATGAGTATCGTTTGTCAAGCTGGTTGGGTCAACAAGAGGACATCCACCGGATTGTTCTGTATCAGTCGGATAGTTCTCTGACTCCTTGGAATCAGCGTTGCATCAGACAGGCAGACTGCATCATTATAGTGGGTGTGGGTGAACAGGAGCCCACTGTGGGAGAGCTAGAGCGAATGCTAGAGAGCAGTGCTGTGAGAGCTCAGAAGCAGCTGGTCCTGTTGCACCGTGAGGACGGGCCGCCGCCAAGAGGAACAGCAGAATGGCTCAACATGCGCAGCTGGATCTCTAGACATCTGCACCTGTCCTGTCCCCACAGGGTCTTCTCCAGGAGGAGCCTGCCTAAACTGAGAGAGATGTATCAGCGGGTATTTGAGAAGCCTCCCGACCGCCATTCTGACTTCTCTCGTCTGGCTCGGATCCTGACAGGCAACGCTATTGCTCTGGTGCTTGGAGGAGGGGGGGCCAGAGGCTGCTCTCAGGTGGGCATCATTCGGGCGTTGAGTGAGGCAGGGATCCCTGTGGATCTGATTGGTGGCACTTCCATTGGTTCGTTGATAGGAGCGCTCTATGCTGAAGAGCGAAGCGTCAGTCGTATGACGGTTAGGGCACGCCAGTGGGCCATGGATTTTGGATCCATATTTAAGAAGATCACAGACCTGACGTACCCAGTGACGTCCATGTTTACTGGAGCATCATTTAACTCCAGCATTAGTGGAATCTTCCAGGACAAACAGATTGAGGACCTTTGGATCCCTTATTTCAACATTACCACAGACATCACTGCCTCCTCCATGAGAGTGAACACTGATGGTTCTCTGTGGAGATATGTGCGTGCCAGCATGTCTCTCTCTGGGTACCTTCCCCCTCTGTGTGACCCTAAAGATGGACACTTGCTCATGGATGGAGGCTACATCAATAACCTGCCTGCTGACACAGCTCGTTCAATGGGTGCCAAGTTGGTGATTGCCGTTGATGTTGGCAGTCAGGATGAAACCGATCTGACTAATTATGGAGACTCTTTATCTGGATGGTGGCTGCTATGGAAACGCTTGAACCCTCTGTCAGAAAAAGTAAAGGTGTTGAACATGGCAGAGATCCAGACCCGTCTGGCTTATGTGTGTTCTGTGCGTCAGCTAGAGATGGTAAAAGACAGTGACTACTGCGAGTACCTGCGACCGCCCATCGATCGCTATGGCACACTGGACTTTGGCAAATTTGATGAGATTGCTGACGTTGGTTACCAGCATGGGAAGACCGTGTTTGATGTGTGGTGTCGGAGCGGGGTGAGGGAGACGATGCTTAAAGACCAGCATCAAGAGGAGTTCCACAAGTCCAGGAGCACTAATGTGACCTGTCCCAATGCTTCTTTCACTGATCTGGCTGAAATAGTGTCCAGAATAGAGCCAGTGACGCAGGCCGTGATGGATGaggagtcCGAGTGCCAGACAGACTATGATGAAGATGCAGTGCTATCAGACTTCGATCTGTCCAATCCAAACAGCGAACACAGTGAGCATActgaagatgaagaggatgagACAGCAGATACAGCCGATACAGATGATGAAATGGAGATCAGGACAAGGAGACATCGAATATTCAAAAACAACAGCCATCATAACACCTGACCTCAAATACTTTTcagagttatttttttcttaagcaACATTATcagtattaaaattaagttactTGAATGGGTAGAAACTAACAGGTACTTATTAGAACAAGCAAGCATTATGCTACATTAgaacacaatattattttttgtaaggGATTGCTAACAGAACACTAAGCTGTCAAAGTAGTAACAATTGCTAAAAAAGAAACTGTGGTTTTCTTGcctttacttttagtttttttcaaaaagttcaATAATATTTGAAGCccttaacatttcattttcatgcaaGCTGTCAATGCAAGTTCAACACAGTTTATTGTGTGAAACGATAAACTTTTGTGTCTATATTATGCTAAAAAAGTTAACCATAGTTCAGGTGGTTTATAACCTGAAGAGAAGGATGAACTAGTAAACATAATTGAGAGATATTCTGATTTGAGTATTTGTAACCATGTAAATGTTGGTAGATCACTGTATCGAAAGTCATTTTGTTGTGAATTATGAGTGAAGTGTTGATTGAAGCAGCtaacaatgttttaatgtgcTATTTGCCTTATAAAAAATTAACAGTT

Function

GO: NA

KEGG:

id description
K14676 NTE, NRE; lysophospholipid hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51632 lncRNA upstream 199379 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 202865 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 205726 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 206473 10325866 ~ 10326714 (+) True G35040
TU51492 lncRNA upstream 241326 10288424 ~ 10291861 (+) True G34959
TU51689 lncRNA downstream 288 10547221 ~ 10547625 (+) True G35081
TU51833 lncRNA downstream 266524 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 291079 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 398123 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 590119 11137052 ~ 11147242 (+) False LOC122346180
XM_043239817.1 mRNA upstream 2107 10527090 ~ 10531080 (+) False dph7
XM_043239816.1 mRNA upstream 2107 10527092 ~ 10531080 (+) True dph7
XM_043239818.1 mRNA upstream 2107 10527475 ~ 10531080 (+) False dph7
XM_043239810.1 mRNA upstream 8397 10469676 ~ 10524790 (+) True abca2
XM_043239812.1 mRNA upstream 8397 10469676 ~ 10524790 (+) False abca2
XM_043239680.1 mRNA downstream 6042 10552975 ~ 10608867 (+) False emid1
XM_043239682.1 mRNA downstream 6042 10552975 ~ 10607560 (+) False emid1
XM_043239684.1 mRNA downstream 6042 10552975 ~ 10607560 (+) False emid1
XM_043239679.1 mRNA downstream 6043 10552976 ~ 10608867 (+) True emid1
XM_043239681.1 mRNA downstream 6043 10552976 ~ 10608867 (+) False emid1
TU51450 other upstream 415061 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 733829 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1661669 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2229036 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2522588 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 182185 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 379890 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 499547 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1377295 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1702205 12249138 ~ 12255672 (+) True G35720

Expression Profile