RNA id: XM_043239817.1


Basic Information

Item Value
RNA id XM_043239817.1
length 1851
RNA type mRNA
GC content 0.49
exon number 9
gene id dph7
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10527090 ~ 10531080 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGACCTGGAAACTATTATAATACTACGTGGAAGCTGGAAGCTAAGATGCATactgttcattaaaataaaattgatctaaaatcacatttttaaatcagatatttGGTGACAGCTGGTCAGCGTGCTGCTTGCATGCAGGGGTCACCGACTGACAGTACGCCTACAGTCACTCATTTCTTGGTCAGTTAAAGTTATTATCCGTTCTGAGTTGCTTTATGTTATGCCGAGCCGCTTAAATGGGTTGGCAGTCTCGAACCCGAACCCTGCAGGTGTTCGACACGGAGTTAAGCGCTGACACCGTGGAGTGGTGCCCGTTACCACAGTGGTCTCATGTTCTGGCATGTGGGACTTACCAACTTCAAAAAGGCGACGAGAAGCAAACCGCAGAAAACTGTTCTGCACCGAGCAGAATCGGTAGACTTTATCTGTTTCAGTGTAATCCGCAACCGTCGTTCATCCCTCCGCTGACTGAGACTCAGAGAGTGGACACTCCTGCTATACTCGACCTCAAATGGTGTCACGTGCCGATATCAGATCGCCCAGTGTTGGGCATGGCCACTGCAAGCGGACAAATCCAGTTATACAAGCTCGTGGAACCTCAGCAGGGCACATGTGTTCTGGAGAACGAGCTGAGCACAGAATTGGGTCCTGACAGACTGGCATTGTCTTTAGACTGGTCCACAGGGAGAGGTGAGAGTGATGTGCGCGTGGTGTCCAGTGACTCGAGCGGCTCTCTCACAGCGCTGTCTCTAGGGGAAGCCGGTTTAACTGCTGTGTGTCAGTGGAAAGCTCACGACTTTGAAGCCTGGATCTCAGCATTTAGCTACTGGGATACACAGATTGTTTATTCAGGTGGTGATGACTGCAAACTAAAGGGTTGGGATCTGAGAATGAGTCCCTCTTCCCCTACCTTCACCAGCAAGAGACACACGATGGGAGTATGCAGTATACACAGTAACCCCCATCGAGAGCACATACTAGCCACAGGAAGCTATGATGAGAACGTGCTGCTCTGGGACGGGAGGAGCATGAAGCAGCCCTTGAGTGAGACCGCAGTAGGTGGAGGTGTGTGGAGACTCAAGTGGCACCCCAGTCAAGAGCACCTGCTGCTAGCTGCGTGCATGCATAATGATTTCCATATCCTCCACTGCCAGAAAGCTATGGAGGGACAAGATGCCCCATGCCCAGTTCTGGCCTCCTATATTCTCCACAACTCCTTAGCATACGGAGCAGACTGGTCCAGACTCCCCCTAAGCAACTCCTCACCCCCCTCTCCTCAGGAACCTCCCCAAACAGTTGGACTCACAGAGTCTGCAGGTCATCTCAGGATCCAGTATGAATCGCCCACCGCCAGCTTTGACACCTCTCTGGAGGATGACTCGGGGCGGTACATACCTGACCGGTGTCCTTTACCAGAAAAAAGTTCAGTTCCAGGCCCCCTCAGCAGCTCTGCTAGAGACTCCCAGTCTCTGTCCTGTCTGATGGCTTCCTGCTCCTTCTACGATCACATGATGCACGTGTGGAGATGGGACTGGAGCCCAGAGGAAAAGCAGACGCCGTTTGAACCCACCTCCTCTTCCTGATCACAGCTGATATGAGCTTTAAAAACCTTTTGAGTTGAGGTTATTTGGACCTGCACATCTCGCTGCATCATGTTGCTGTAACATATATATCATTGCTTAGTATTCCATATATGCAATTTTGAGATACTGTATCTTTATTTCAACCGAGTGTTATTTTTCTGACTATATATTTTAGCTAGAAAATGTAAAGGACCTTTTCTAGTTTTACACTGAGAACCAGACAAAGACCTTTTATAACAAATAAACCATAactctattaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51632 lncRNA upstream 193282 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 196768 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 199629 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 200376 10325866 ~ 10326714 (+) True G35040
TU51492 lncRNA upstream 235229 10288424 ~ 10291861 (+) True G34959
TU51689 lncRNA downstream 16141 10547221 ~ 10547625 (+) True G35081
TU51833 lncRNA downstream 282377 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 306932 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 413976 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 605972 11137052 ~ 11147242 (+) False LOC122346180
XM_043239810.1 mRNA upstream 2300 10469676 ~ 10524790 (+) True abca2
XM_043239812.1 mRNA upstream 2300 10469676 ~ 10524790 (+) False abca2
XM_043239813.1 mRNA upstream 2300 10469676 ~ 10524790 (+) False abca2
XM_043239811.1 mRNA upstream 2300 10469676 ~ 10524790 (+) False abca2
XM_043238899.1 mRNA upstream 93397 10408635 ~ 10433693 (+) True rorb
XM_043239815.1 mRNA downstream 2107 10533187 ~ 10546933 (+) True pnpla7b
XM_043239680.1 mRNA downstream 21895 10552975 ~ 10608867 (+) False emid1
XM_043239682.1 mRNA downstream 21895 10552975 ~ 10607560 (+) False emid1
XM_043239684.1 mRNA downstream 21895 10552975 ~ 10607560 (+) False emid1
XM_043239679.1 mRNA downstream 21896 10552976 ~ 10608867 (+) True emid1
TU51450 other upstream 408964 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 727732 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1655572 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2222939 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2516491 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 198038 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 395743 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 515400 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1393148 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1718058 12249138 ~ 12255672 (+) True G35720

Expression Profile