RNA id: XM_043239831.1


Basic Information

Item Value
RNA id XM_043239831.1
length 3577
RNA type mRNA
GC content 0.44
exon number 12
gene id tmem161b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17616213 ~ 17632162 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCAACACAGTACTCTCAAATAACAGCACCGCAAGACAGGCTTATGTGCTCCGTGCCGCTGGATCTCCGCTCAGGGGTGCTCAGAGTGTCAGCCGGCTTTGAGATCTATCACAGCACTGCAACATCACTATGGGTGTGATCAGTGTGCAGCTGgtggttaccatggtaatgGCCAGCGTGATTCAGAAGATCATACCCCACTATTCCTTTGCACGATGGCTCCTCTGCAGTGGCAGCCTGCGTTGGTACCAGCACCCCACAGAAGATGAGCTGAGGACTTTAGCTGGAAAACAGCAGAAAGGAGGCAAGAGCAAGAAGGACAGGAAGTACAATGGGCACTTGGAGAACAAGCCGATGACTATTCCCAAAGACATCGACCTTCAACTGGAGACTAAATGCATTGCAGAAGTGGACACACTAGCTCTGCATTACTTTCCTGAATTCCAGTGGCTGGTGGACTTCACGGTGGCTGCCACTGTGGTGTATCTCATCACTGAGCTCTACTTCTGTGTAGCAGAGCCAAGTGGAGAGATGAACATCAGTGTGGTGTGGAGCCTGCTGGTCTTGGCCTTTGTCATGAAGATCCTTTTCTCCCTCACGGCTCACTACTTCAGACTAGAGGAGGGCGGTGAGCGTTCCCTCTGCATCACCTTtgcctttttcttctttgtgaAAGCCATGGCTATTCTTATTATCACAGAGAACTACCTGGAATTTGGCCTTGAGACAGGCTTTGCAAATTTTTCCGAAAGTGCCGTGCAGTTTCTGGAGAACCAAGGCCTTGATTCTCAGGGCCCCATATCCAAGCTGACCTTTAAGCTGATCCTGGCTCTGCTTTGCGCTCTCATTGGAGCCTTTCTCACCTTCCCCGGCCTGCGATTGGCTCAGATGCATCTTGATGCCCTCACACTGAACAACTGCAAAGTCACGCAGACCTTGCTACATATCAACTTCTTGGCTCCCTTAATCATGGTACTGTTATGGGTAAAGCCCATAACAAAGGATTACATAATAAATCCCACATTTGGGAAAGATAGTGTGCCTTTGATGTCTGAGAAGACATACGACACATTGCGTCTGTGGGTGATCCTGCTTCTGTGTGTGCTGAGACTAGCCATGATGAGGCATCATCTCCAGGCCTACCTTAACCTGGCCCAGAAGGGCGTCTTGCAGATGAAGAAGGAAGCGGGACGCATTAGTACAATGGACCTCCAAAAGATGGTCGCCCGAGTCTTTTACTACCTGTGCGTAATAGCTCTTCAGTACGTTGCACCTCTGGTGATGCTGTTGCACACTACTTTGCTGCTAAAGACATTAGGTGGATACTCGTGGGTGATTTACCCTGAAGAGAATTTGCCGTGTCTGTCAGATGAGGACTCAAGCCCCTCCGAGGTGGGGCAGGGCGAGATGCAGGCCTCTCAAACCGTGGCCCAGCTGTCGGTTGCTCTCGGGGGGCTGAGGACTGTTTTCTCGCCCTTGCTTTTTCGAGGGCTCCTGTCCTTCTTCACTTGGTGGATTGCCGCATGCCTGTTCTCCACCTCTCTCTTCGGCCTCTTCTACCACCAGTATCTGATGGCTGCATAGCATCGGGAATCACCTTTCTGACTGAACTGTGCGACACGAGGCCCTGGTACATTCCCCCTTTTTGACAACCATATCAGCTGGGTTCTCCTCTGAGGGGGCTTCCTCCATGAACACGTTATTTTAACCTAGCCGTAAACCACAACAGTAACAGTCATTGTAACATTTCTAAGCATCAGTGGATGGAGAACAGTGTCTGAAGGAGACCTCAAAATAATGCTGATTTTAAAGGGGACGGTGTCTTCGAACCACCACAAGGTTAAAAGCGAGGGATCACTCATGTCCGTTGACATtgtgtattttctattttctttttgatgaTGCTAGACAAATTTCATAAGAATGACggtttttaatagtgttttaaagCTCTCTAAAGTAGAAACTGACTTCTGCTTTAGGGGAGGATTTCATCGCTGATTCGTGAAAAGGAAACGGTGTTTTAGTCGAGCTTGGAGAGTGTAGAGAGGGGATTGATCAAGGAGAACAGTGTGTGTTAAAGgtatatttatttgtccattTTAGAGGGACTGAAGCCAGCCTTCCCACAAGGAGCGTTTTTCGTTTGACTGTAGAAGACTGAGAGATAATTTaagtgtgcgtgcgcgtgtgagAGTGATGGTTCGTGTGTTAACATCAGTGCCTGCAGGCTCCCAGTGACCCCTGCTGCTGGTGGGTAAATCTAAAAAGGGCATTTTGATCAAGTATAAAAGCTAACTCAAAAAACTGTCTAAAGCAGTGGCCTCCGCTCTTCTGATACCCTTCCCTGTCATTTAACCGGTCGGATGTTTCACTTTGAATTTGGGTCCAGTGACATCAAACGCATCCTGTACGCGTGCTCCGTGTTTCTGTATGGAGCCTATTGATTTTCTGTAATGCATCAAATAACAGGATTGGATTTGTTTCATGTGAAGGTGCCAAGGATGCTTGTATTCCCCCGTGAGTGTGTACAGTACTTCCTGTTGGAAATCGGAAGCACACATGCTGAGGTACGAGCCAAAGCAGAACATGCTGCTTGATCACAAAGAAACGTCTACGAGGTCCactttaatattgtttttttttttttggcactaCAGTTACAAAAACCACACAAAGGCATatctgaagtatttttttttttctgtttgtctttttttagtgTTAACCTACTGTACTTTTTACTGTTAACCTAAGTCTTATTCTCTCCTTCCGTTTTGAGTTCTTGGAAGGTACGCAGACAATGAATGTATTGATCCTgcctgattttatttcattttctttttttttgttatcatagaaaaaaatctaatacaGTTTTGGTGCTCCACATACGAAATGATCTCGACTTTTAACAAATgtcagttacatttaaaatccgGTTGTGGATACTCTCAAGGATATTTATATTGCAAAGGAGCATCCGCTATTATCAAAAGCACACTATACAATCAATACGTGTTAACAATGTGGCAGTTAGATGCTgaattccaatttttttttctactctgCCGTTGATTATCAAGCTGTGAAGATTGATGGATGCAAAGGGGagtttattttagctgtaaacATTTGCAATTTTTGGTAATCATCAAGCAGGGCCGTTTTAGTCCTACACTCagctatagttttttttcttttacgctttaccatattttgatttttctcaccataaaaaaaaaataataataacaacatcaaGTGACCAAAATTTATCTAAAAATCTTATAGTATAGCCCCTTTTAtgagatgttcaataaacatctgtacattttttaacCCTAATGCCAAATACTATACGAGACTCAGAACTGAGCCAATAttaatttaagatattaaaaacaaatcactcttcttctttttttcctcccacaGTATTCCAGTAGTGAAGTAGCTGGGATCTCTTTTAAAACCTATGAGCCTAAATGGGTCTGTTATTCTTTAATGCGTTTTAAGTacttattctttatttattacttttcagtttgtttaataaatgattgtCAAAAAAGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55147 lncRNA downstream 263803 17351315 ~ 17352410 (-) True G37363
TU55140 lncRNA downstream 266247 17346469 ~ 17349966 (-) True LOC122344738
TU55103 lncRNA downstream 451061 17162677 ~ 17165152 (-) True G37340
TU55038 lncRNA downstream 725023 16890704 ~ 16891190 (-) True G37310
TU55037 lncRNA downstream 725895 16889042 ~ 16890318 (-) True G37309
XR_006250975.1 lncRNA upstream 14017 17646096 ~ 17686024 (-) False LOC122345155
XR_006250974.1 lncRNA upstream 14017 17646096 ~ 17684773 (-) False LOC122345155
TU55241 lncRNA upstream 14020 17646099 ~ 17679650 (-) False LOC122345155
TU55242 lncRNA upstream 14020 17646099 ~ 17684795 (-) True LOC122345155
TU55243 lncRNA upstream 14020 17646099 ~ 17679650 (-) False LOC122345155
XM_043239051.1 mRNA downstream 23856 17586823 ~ 17592357 (-) False ccnh
XM_043239049.1 mRNA downstream 24766 17586823 ~ 17591447 (-) True ccnh
XM_043239050.1 mRNA downstream 24791 17586823 ~ 17591422 (-) False ccnh
XM_043238260.1 mRNA downstream 232065 17382031 ~ 17384148 (-) True LOC122344712
XM_043239777.1 mRNA downstream 256472 17354929 ~ 17359741 (-) True LOC122345546
XM_043238994.1 mRNA upstream 54422 17686501 ~ 17755766 (-) False mef2cb
XM_043239005.1 mRNA upstream 54422 17686501 ~ 17746521 (-) False mef2cb
XM_043238998.1 mRNA upstream 54422 17686501 ~ 17746519 (-) False mef2cb
XM_043239000.1 mRNA upstream 54422 17686501 ~ 17746519 (-) False mef2cb
XM_043239004.1 mRNA upstream 54422 17686501 ~ 17746519 (-) True mef2cb
TU54999 other downstream 903046 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 903046 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 983092 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1237718 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1359474 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 2235307 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 2235307 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 2236735 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2419580 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2493510 20125589 ~ 20127390 (-) True G38140

Expression Profile