RNA id: XM_043239838.1


Basic Information

Item Value
RNA id XM_043239838.1
length 1950
RNA type mRNA
GC content 0.42
exon number 10
gene id hdr
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9571202 ~ 9575807 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gctattCAACACAACGTGAAGCTTGTAGGCGGTTCGCGGGACAACCAGGTTGTTTCGCAAATTTTAAAATTCCACTATTGCGAAggactcatgaatattaattagatgcCAGTCGTCACGTAACTGGAATCTAAGCAATTTATACAAACAACGTCACCAGAATAGAATTAATACTCATGAGCTAGGCCTCGGCCATAGTAGGATTCGTAACTTCACTTGCCGTTCGTTCTGGCTTGAAGAAGCGCTCGATTCCACGATATAAGACCGGAAGTTTTAAACTAAACGCTCAGAGGTACGCTATCAGTAGGATGGGACGCGAGCTTCCTTCAGTTTATCCGGAGAAAGTGACACAATGATTTAACTACTATGAGATACATAATTTTCTTGATCTTGTTGTTACTAAACGCCATACGTGCTGCTAAATGTCACTCGGATCTGGCCTGGACTCGAGGATCCATCAAGAACCGATCAAGTCGGGATGTTTCCTGCAAAGAGGGCTTGGAATACGAACACAGTAACATCTGCTGCCTGAACTGCCCTGCTGGCACATATGTGAAAAAGGCCTGTCTTACCGCTTTAGAGAAAGGAGTTTGCGAACCGTGCGAGTTTGACAAATACACTGAGCATGACAATGGACTGCGGAAGTGTTTATCGTGCACCAAGTGCCGTATAGATCAGGAAACCACGGAGAAATGCACAAGTACCCAGGACACACAGTGCAAGTGCAAAGAGGGCTCGTTTTGTTTACCTGACCAGGCGTGTGAGGTGTGCAAGAAATGCAAAAGATGCACAAAGGATGAAGATACTGTAAAAAGCTGTACAAGCGTTTCCAACACCGTTTGTACGAAGAGAAGCTCTTCGAACGGCTCTAACTCAGTGACTTTCATTGTTGTTGTGTCATTCTTTGCAATGCTGGCATTCGTTGTGGGTATCGTCTACTGGACAAAGTCAAAACCATGTAAAAAAGCAGTAACATCGAGAAGTCCAAGGGAAATGGTTAAAATCTGTATGGGTGACAGTGAGAAGGTGAAAGAGGAGAGGCAGAATGCCCACAACTCCAAGATGGATGACTCCTCTCCGCTCCAGCCGTTCCTTGAGCAAAACTATGCGGTGGGTACCGACATCCCTGCTTCAGCGGAGACGGAGAAAGACAGGGGACTAGGAGACAGCCTCCCCAACACCGCCAACTCCTCACAAACTAGCCTGGCTGTGTCTGCTGCGCTTAGCGATCTCCAGCTCCATCACACTAACCAGCCTCCAAGCTCCGCCGCTTTGGAAAGAGAGTCAATAAGAAGACTTGTTCCTTTAAACGGAGAAGAATCACTGAAGAAAAGCTTTggtttttttgaagaaatggATGTCCACTATCACAACAGATTTTTCCGGTTCATTGGACTGAGTGATAATTCAATCAAAAGTGCAGAGTCTCTCTTTCCGGAAGACAGAGTTTACGAACTGTTAAAAATCTGGATGGAAAAGGAGGGACTGAAGGCAGATTTCAACAGTCTTATTGAAGCATTAATCTATTTAGACCAGAAGCTGTCAGCAGAAAATATCATTTCAAAGGCAATTTCTAATCGTTACTTTAAATATGAGGATGAGTGACTGGAAGCACGCACATATTGTCACCACCTTAGTGtcaaagatatttttttgaGCTTGACTTACCTTATGCAGTATTATTTCCCAATTCTAAAATGCAAAGTTcactgacaaaatatttatgttgGCCGTAAAAGTTTTTTAGATAAGATGCCGCTGTTTACAAATGTACAttaagtggggaaaaaaaagatttaaaatttaagactcctaatattaaatgtgtggTCTTACAtgttgaaatgcattatttctcattttgtatacaaaattgaaatgtatttaatgatcTTGAAAAGTTGTTTACATATGATTATATTGTAAACTAATAAAAGCAATTTgtctgta

Function

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0007165 signal transduction biological_process

KEGG:

id description
K04722 TNFRSF10A_B, TRAILR1_2, DR4_5, CD261_2; tumor necrosis factor receptor superfamily member 10A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51125 lncRNA downstream 323161 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 510388 9013306 ~ 9060814 (-) True G34594
TU50996 lncRNA downstream 579889 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 580179 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 637063 8933911 ~ 8934139 (-) True G34583
TU51339 lncRNA upstream 188266 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 190461 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 201826 9777633 ~ 9778238 (-) True G34877
TU51619 lncRNA upstream 705602 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 761940 10337747 ~ 10341167 (-) True G35047
XM_043239201.1 mRNA downstream 1908 9566515 ~ 9569294 (-) False LOC122345250
XM_043239200.1 mRNA downstream 1908 9566515 ~ 9569294 (-) True LOC122345250
XM_043239204.1 mRNA downstream 5270 9565479 ~ 9565932 (-) True zgc:153409
XM_043239202.1 mRNA downstream 7906 9561925 ~ 9563296 (-) True LOC122345251
XM_043239198.1 mRNA downstream 12831 9535533 ~ 9558371 (-) False loxl2b
XM_043239837.1 mRNA upstream 3681 9579488 ~ 9681801 (-) True unc5db
XM_043240507.1 mRNA upstream 174845 9750652 ~ 9752957 (-) True tm2d2
XM_043240165.1 mRNA upstream 178227 9754034 ~ 9757833 (-) False tbx3b
XM_043240164.1 mRNA upstream 178227 9754034 ~ 9757833 (-) True tbx3b
XM_043239701.1 mRNA upstream 205031 9780838 ~ 9791734 (-) False araf
TU51236 other downstream 168579 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 350695 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 641149 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 893484 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1139627 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 749308 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 885401 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1292557 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1348120 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1844148 11419955 ~ 11467122 (-) False hmgn7

Expression Profile