RNA id: XM_043239846.1


Basic Information

Item Value
RNA id XM_043239846.1
length 1732
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC122345582
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13965155 ~ 13967827 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCTCAAATCACTGCTGGCGACTGAGCAATCAAGTACTAGCTTTCAAACAGAGATGTTTCGGCGGTGTCTGTCTCCTCTTtgcatcctcatcctcatctgttTGGTGTTCACAAACTCTTCTTACCCTTTTGGACACAGAGGGGCGCTGTCCTTCTCCAATTCATTGCGCCTTACTCTCTCTATTCGTGCACGTGTTCAGCAGCTGCTGTCCCGCTACaaaCAACAGCTGTTTGGCGACGAGCTCTTTGAATACAGGGAGCTGATGCTGAATACGCTTCCCGCGGTCACCGTCAGCTATCGGACCTGGCTACGCATGCAGGACACTGAGCGTCTGCGTTTGGCCTCTCGCAACCTCCAAACTTTCTGGACTCATCTGGAAGTTCAACGGCAgcagctggagagagagagggacgcGACGAAGGAAAGAAGAGAGCAGAGAAGGGGCAAACGAGGAAGGCCTCAGCTCACCTTGTGCCAAAGATTCGATAGTCTGCAAGTAGATTTGCGGGACTTAATGAAACAAGTCAACTCTCAGTTGAACAGTCTGAGTATCACGGCATCTACAAATTCCCCACTTCTACACGCAACTTCATCTTCCAGTCCgactcccagcatgcatcatTCCACAGAGAGCACCACAATACTGCAGACCCCAACTCAGACAGATGATCATCGCAGCTCCACGCAGTCTTCTACTTCAGTGACGGAGAAGATTTCCGTCAGCCTTCCACAACCCACCCAGGCATCAGCAGGCTTAATTTTCACGGGAAGCCAGTTATCTGTGGACACCCTGCAGACAACAACAGCAGAGATGTCCCGCTGGATTCAGCATCTGAGGGGGTATGTGATACTGAGAGACCTGGAACGGTACTTAAGCAGATTGGCACGAGATTACTCTGTGCTCCAATCTAAATACTGACAAACGCACTTAAGTAATTTAACCAATGCggttaaaaaagtacaaaaaaaacaagtattgCACAAGTATTACACAGAATTAATTCTAAAACAAAACCAAGAAATTACGTAATTGAATACACTAACATTCATATCCATAAACATTTCCATGTCAGTTTCTGTTTACCttgtgctttaaatattttatttatgaaaataatttattactattttttatttactgtttgtttacaattaattaaacagattttactgcattctgtattttatatttaagtatttttgatGTATTTGGTAAGTCTCAGGGGTTCAGTACATCAGCAGGCAGCTAGTGTGGGTTATCATGAGATTgccaaacagtgtttttttgatCCAATAGTATTTTTAGATAATACAATTATTGTACTTGAATGTATATTTGTCTGTTTGAAGGGTAAGTgcgttattttatttatattggacaattttactgaaacaaaaaaaggttagtCAGCCATTCTGGAAGACCAAAATTCCCCAAACACCCCACTTCCCTCCTCTACTGTTAATCAGTAAATCAGAGGTCAGAATGAGATTTTACATCCCTTTTTCATTGTCATTCCCCTGTACTTTCCAccttgtgttatttattaaattatttattttatttatgtgatttatatttttttatagaatatttattgtttgtaattaaGTGCATaagtgaaatgtttattttgtacaagcttgatttgaataaaaccaTGAAGTGCATCTAGTGCATATTTGTGTgacagttttttcttcttttacatACAATAGACAGTAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53531 lncRNA downstream 145821 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 251735 13712680 ~ 13713420 (-) True G36297
TU53382 lncRNA downstream 253196 13708100 ~ 13711959 (-) True G36224
TU53457 lncRNA downstream 321830 13642526 ~ 13643325 (-) False LOC122345175
TU53448 lncRNA downstream 327832 13633670 ~ 13637323 (-) True G36279
TU53602 lncRNA upstream 7525 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA upstream 7525 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA upstream 7525 13975352 ~ 13977070 (-) False G36385
TU53878 lncRNA upstream 308269 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA upstream 311847 14279674 ~ 14282516 (-) True znhit1
XM_043240379.1 mRNA downstream 24939 13938641 ~ 13940216 (-) True chrm1b
XM_043240423.1 mRNA downstream 117085 13845403 ~ 13848070 (-) True LOC122345901
XM_043238578.1 mRNA downstream 232672 13720781 ~ 13732483 (-) True wdr44
XM_043239036.1 mRNA downstream 265940 13654294 ~ 13699215 (-) False lrch2
XM_043239548.1 mRNA upstream 19662 13987489 ~ 14000256 (-) True arhgap35b
XM_043239554.1 mRNA upstream 32732 14000559 ~ 14002075 (-) True fxyd2
XM_043239549.1 mRNA upstream 34107 14001934 ~ 14009536 (-) False tmprss13b
XM_043239552.1 mRNA upstream 34107 14001934 ~ 14009536 (-) False tmprss13b
XM_043239551.1 mRNA upstream 34107 14001934 ~ 14009536 (-) True tmprss13b
TU53547 other downstream 117096 13846378 ~ 13848059 (-) False LOC122345901
unassigned_transcript_957 other downstream 120196 13844887 ~ 13844959 (-) True trnam-cau_27
unassigned_transcript_956 other downstream 126193 13838890 ~ 13838962 (-) True trnam-cau_26
TU53529 other downstream 146213 13817742 ~ 13818942 (-) True G36336
TU53475 other downstream 246612 13717124 ~ 13718543 (-) True G36298
XR_006251003.1 other upstream 34107 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other upstream 35387 14003214 ~ 14009536 (-) False tmprss13b
XR_006250968.1 other upstream 77650 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other upstream 77650 14045477 ~ 14056705 (-) True rnf214
TU53907 other upstream 324236 14292063 ~ 14302381 (-) True LOC122345141

Expression Profile