RNA id: XM_043239858.1


Basic Information

Item Value
RNA id XM_043239858.1
length 4751
RNA type mRNA
GC content 0.45
exon number 17
gene id scai
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7512317 ~ 7536783 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGACAAGCAGGTTAGTTTGAGCGGGTTGCCACAACAGTCAATGAAAATCCAACTGGCCAGACTGAACCGTCGACCGCAGTAGATGCCGAATGGCAGATGCTCCCTGCTCTTCCCTGGGAGGGTGATTTGAATGAGCTGGATGTAAATGACGGTGCGCCACCGCACTGGATGTCTAGATCTGTGTCGGGGCGAGATTCACAGGCGCTCTCTAACGTTACCTGGAAACGCTGTTCTTGAGGAGCATAAAGAGGAGATAGCTGCACTAAACTACACCGGTGCTCAGCAGCTGCCATGACAGGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAACAGCTTTTCAATGGCTTAAGGGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACATTTGACGTATACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAGACAAGTTCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGCTGTACTACCATTACTAcCTCCGCACTTCAGAAACAAGCTACCTTAATGAAGCCTTTTCCTTTTATTCGGCCATTCGCCAACGATCATATTACCACCAAGTCAACAAAGAAGACAGGCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTATGCTCGCTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTAAAAGTGTTGGTCAAGGAGCTGTCTGAAGAGATTGAGGACTACACCCAACGCTTCAACACGGAGGACCAGTTAGAGTGGAACCTGGTGCTGCAGGAAGTCGCAGCTTTTGTGGAGGCGGATCCTCTTATGATCCTAAATGATGACAACGCCGTGGTGGTCATGTCCAATCGGTTGCAGGAGGGAGGCGTGCCCTCACTTGAACAGGGCATGGTGGTTGGCCAGCTCACCTTGGCAGATGCGCTCATCGTTGGCAACTGTAACAATCAGGTGAAGTTTAGCGAGCTGACCATCGATATGTTTCGCATGCTTCAAGCGCTTGAGAGGGAACCGGTGAACCTGGCTACACAAAGCTCCAAGCCAGGGACACTTGTAAGAGAAGACTCTTACACTCTCCCTGTCACTCTCTATGAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAGGAACTGCCAGCCAATAGTGTCCTGCTGGTGTATCTGTCTGCCACTGGAGTGTTTCCTACTGGACGCTCAGAGTGTGAagGGCCTTATGATTTTGGAGGTGTCCTGACCAATACTAATCGAGATGTGGTAAACGGCGAGATGGTTCAGAAGAGAAACCAGGCACAAAAAGAGATGCACTGtctCCACCCAGGAGACCTTTTCCCCTTCACCAGGAAACCTCTGTTTATCATTGTCGACTCATCCAACAGCACAGCTTATAAGAATTTCTCCAATCTGTTTGGCCAGCCACTTGTTTGCCTGCTTTCTCCGACAGTGTATCCGAAGAGCATGCAAGACCAGTGTCAGCGTGGGAGTCTGTTTACTCTTTTTCTTTACAACCCCCTCATGGgcttcctgtctgtgtgtggACTGAGCAGCATGCGCTATGGATTATGGGAAAAGGCCCAGGAACTCCTACGGAAGATTTTCCATGACATCGGCCAAATGATCACGAGTTCACGAGTTATAGATCAGGCCTATCTGCAGTTTTACGGCGATGAATTTCTGCGTCTGCTCATGATCCGTTTCGTGTTCTGCTGCACCACACTCCGATTACACAAGCTTTTCCGGGAAGCGAGGAGTTTTCCAGAATCGTACCCGCCGCTGCCCAAACAAGAGATGGTGGAGAGCAGCCTTTTACAGAAACATGTGCTGGAGCTGGCGGCCATGTTGGACGTGCAAAACCTCTTCTCTGATGGCATGTTGGATAACTATTGACCACATGGTGGCACCAGGCCAACCAGCagacgcacgcacgcacacacacacacacacacacacacacacgctcatgcccatacacacacaaaaccgaGTTGTAGGTAGGTTCTTCTGAATAAGCTAGTTGTTTAACCTAATCTCATTAGATCTAGATACGGTAGTTTAATAACTATTCAAGACAAAATATCTCATCTTTGTGGgcagatatttaaaatttgtcgagttcatatgtatttttagactttaagaagctacacacacacgcacacactcacacacagatgcGAAAGAGTTGCTCCCAGCATACAGGAAAATGTACTACATGCATGTATCGTATGAGTGTATGAGCGCAGGCATACAGGCGTTCAGACCTGTTGAGGGCAGCTATCACCGTTTCTGAAGGTGATAAGAGAGCACAAGAAGAAAGCCGACTTGGAAACTTTTATGTGAATCGGTGTAATTCCAGGGAGATTCTTCCAAAAAAGATGAGCCTACGGCTTTGGCAAAACGCATTTCGGAGAAGGAagtttgttttcctttctcAACACTTTGCCTCTGCAACGTTTACACAACCTTTTTCCATAGGGAGCGTGTTGCATGTTTGCATTTCTTTGCTCCATCTTGCCTTTTCTGTTTGCTGAAACGTGTTCATTTTCCCATCTTGACACAAATTCCACAGACTTTCGCCTGGTCTTTCGAAGGAGGCCCACCGCGCCGTGCCTCCTTTTGGGTGATTTTGGTCATCGGCTACTTAATTAACGCTACGTGGACACCAGAATCTCCATTTCTTTTCGAGCGTTGATTCTTTTTAGCATGCCTCGATAGTGTGGTAAGCCCATACTTGCATAGCTGATGTAATAACCTAATGTCTTATTCCATGTGTGCAGTGGACACCAATAGCCAACAGAGTTCTCTTTTATAGTGTCACAGAGAAGTACAGGCGTACTCCTGTATATAAGTACAaatttgtgtatatatctatatataaatatatgtatagttCTATAAGAAGTCGATGTGATGCAGAGACGTGTGTCTGTCTGGGTTGTTCGTCGTGGCAGATCTGTGAAAAGATGACCCTCTGCATGTGACAGGGGCAGTGTTCTTTTGTCTAATCTGTGAATGGACCATGCCACTGTCTCAACTGCGCACCCTCCCGCTGCTTCACACGAGTGCAGTCAGCTGACATTCCAAGGATCATGGCATAAGAGCGTCCCTCTTTCACAACCCCATCTGTCTCAAGGACAAGTGCACTGCGTCGGTCTAATAAGAAGTGATGTGTTCGGTGTTTCGTTTGTTTCATTACGTCATGACGATAATTACGACGAAAACGGTTACAATAATAGCCTTGCACTTTACTTGCACTATTTAAGTTTGATTCCGATGTTATTTATTGTGCTGTTGGCAAGAGGCATGTCTGATCATTCCGTTATGTCACGCTTGGTAAATAGCTTATCATTTTCGCCGTCTGTGATCTGTGTTAGAAAACGCCACAAATGGTGACTGGTTTTTCGGCGTTTACCGACTTTTCCCCCACCCCTACGAACTTCAGGGTTGATTGTGGCCATTCGAATGGGACCAAAAGATTCTTGCATGTGAAGAGCACAATGTCCCATACGATTCTAGTACCCTGTCATCTCGCTGTCTCTATTTGATATTTTGCACGTAGCTGCTTCCAATcgcatcttttttattttcgaATAATCCTcttgaaagaaaagagagaagttTGCTAACGAACAAATCACTGCCAAACACAATTAACCTTCCCATGGAATATCCACTGCCCAAATTAAGCAGACAACATGGTTGTCTGTGCTCTCACAGGCACAAATTTGTTTTTACGACCTAGCTTTTGATGTTTTAGTTTGCCAAAAGGAGAAGGGCTGGATGGAGATGAAGAGGGAAACAGATGGTGGATGCCACCATTTCCTCTCTGTCTAGCTGTCTGACCTTGACTGGTGGACTGTCGAACGTTTTTGCCTTATTTGATTTGTATCCGTATGTGTGTATAACTTTCCAGGAACCTGTAAATTAACCCAGTTTTTGCTGGGACTGTCCCAGAACAGTGCTGTATTCACGCCGCGTCACTTAGCTGAGAGCACAGGGGTGAATACAGACTTTAAGCacttgaaaatgttaaatgtaccACAACAGAAACCTACCAACCTAAAATTCAAGGGGAAACGCAGTACcctttttaaaagacaattaacAAAGCGTTTCTCGCCGATTGCCCAAATTTCTGTAGTAGATGCATGTTAATTAGCTAATCTGTTGATGCCCCCTGCTCCATTTTAATGCAACCTGTAAATGCATTGGCGGCAATGATTGGAAGGAACGGAGTGAAAATCAACCGCATTCGTTTTCTAATGTAAACACGGGGCCAGATCTAAGGTGTAGTACGGGTGATTTCTACCAGTTCCTACTGTTGTGGGAgggaacattttcaaaaatgatgtAATGGTCAGAATACTCTTTCTTTATAAGTTAAGGGGTTCTAGAGTTGCTAGTTGAACATACTTGCATTGTCCAATTGTCGTGTTTTTAATCACTAAACCGTTATGTCTTATCTGTTGCCAAATTATATTTGATGTTTGTtgttaaatgcagaaaaaaagaatacagaaaaaaatgtgatgataCCAAACATgcaagctttttgtttttaagaatgctatttaagaacattaaaaagtttatgaatgttttgtttaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251016.1 lncRNA downstream 13529 7495614 ~ 7498788 (-) True LOC122345617
XR_006251018.1 lncRNA downstream 52206 7450377 ~ 7460111 (-) False LOC122345654
XR_006251019.1 lncRNA downstream 52206 7450377 ~ 7460111 (-) True LOC122345654
TU50073 lncRNA downstream 117085 7366250 ~ 7395232 (-) True G33990
TU50064 lncRNA downstream 175772 7334414 ~ 7336545 (-) True G33985
TU50121 lncRNA upstream 35377 7572160 ~ 7578212 (-) True G34025
TU50415 lncRNA upstream 106187 7642970 ~ 7644229 (-) True G34214
TU50458 lncRNA upstream 173122 7709905 ~ 7710223 (-) False LOC122345606
TU50461 lncRNA upstream 175260 7712043 ~ 7712494 (-) True G34248
TU50441 lncRNA upstream 180790 7717573 ~ 7760165 (-) True G34231
XM_043239906.1 mRNA downstream 7661 7501635 ~ 7504656 (-) False zmat5
XM_043239905.1 mRNA downstream 7663 7501635 ~ 7504654 (-) True zmat5
XM_043239901.1 mRNA downstream 32513 7475268 ~ 7479804 (-) True tescb
XM_043239874.1 mRNA downstream 43160 7461261 ~ 7469157 (-) True taok3b
XM_043239974.1 mRNA downstream 62859 7438835 ~ 7449458 (-) True myhz2
XM_043239890.1 mRNA upstream 564 7537347 ~ 7540940 (-) True ppp6c
XM_043239849.1 mRNA upstream 4459 7541242 ~ 7557708 (-) True myo1hb
XM_043239850.1 mRNA upstream 4459 7541242 ~ 7552376 (-) False myo1hb
XM_043239896.1 mRNA upstream 21496 7558279 ~ 7561111 (-) False ungb
XM_043239897.1 mRNA upstream 21496 7558279 ~ 7561111 (-) False ungb
TU50081 other downstream 115164 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 389853 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 390468 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 569114 6930872 ~ 6943203 (-) False usp20
XR_006251011.1 other downstream 569125 6923430 ~ 6943192 (-) True usp20
TU50440 other upstream 182913 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50633 other upstream 875099 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 892917 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 1137766 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 1392687 8929470 ~ 8930053 (-) True G34580

Expression Profile