RNA id: XM_043239890.1


Basic Information

Item Value
RNA id XM_043239890.1
length 1649
RNA type mRNA
GC content 0.42
exon number 7
gene id ppp6c
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7537347 ~ 7540940 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACCGCTGTGCCAATCATTACCGCCCAGCGTGACGTAGAAAGACTTCCTCTTTGCTTCTTCTATCGACTGTTGTTCTTAAAATGGCGCCGTTGGACCTAGATAAGTATGTTGAAATTGCGAGACAGTGCAAGTACCTTCCAGAGAACGACTTAAAGAGATTGTGTGACTATGTATGCGACTTGCTACTCGAAGAATCAAATGTACAGCCAGTATCCACTCCAGTCACTGTATGCGGAGATATTCACGGACAGTTTTATGACTTATGTGAACTCTTCAGAACTGGGGGCCAAGTACCAGacacaaattacattttcatgGGTGACTTTGTCGACCGAGGATACTACAGCTTAGAAACGTTCACGTATTTGCTAGCACTTAAAGCTAAGTGGCCTGACCGCATCACACTGTTGCGTGGCAATCACGAGAGCAGGCAGATAACACAAGTCTATGGTTTTTATGATGAGTGCCAAACGAAATATGGAAATGCTAATGCCTGGCGATACTGCACTAAAGTATTTGACATGCTGACTGTTGCTGctTTGATAGATGAGCAGATCCTTTGTGTACATGGTGGCCTTTCACCTGACATCAAAACTCTTGATCAGATACGCACCATTGAACGCAATCAGGAAATTCCTCACAAGGGAGCATTTTGTGATCTTGTCTGGTCTGATCCAGAGGATGTGGACACCTGGGCTATCAGCCCGAGGGGAGCTGGCTGGCTGTTTGGTGCTAAGGTTACCAATGAGTTTGTCCACATTAACAACTTGAAGTTGATTTGCCGTGCACATCAGTTGGTTCACGAGGGCTACAAATTCATGTTTGATGAGAAGCTGGTGACCGTCTGGTCGGCCCCAAACTACTGCTACCGCTGCGGTAACATCGCCTCCATCATGGTCTTCAAAGACGTGAACACAAGGGAGCCCAAGTTATTCCGGGCCGTCCCTGATTCGGAAAGGGTCATACCACCTAGAACGACAACACCCTACTTCCTCTGAGTTCCTCATTGTCGCCTGCGTCCAGCCCTCTCCTTTTCATTGTTCGTTGTTATGGTCTTTAATTTCtgttgcattttttcttttttgactattttttgtaaagatCGAAGTGCTCTCCAGAATAACAACGGTAAACTATGGTCAGGATTATGAACTCTTTAGACTGTGTTTAAGTTAGTCATTATTTGGTCAGTGCAATCTTGTTAATGTGAGCGTGTGACCGTAAATAAGTGGACATCCTCATGCTCTTCTTACAGGGCTTTAAATGTAGATCTAACAGCCATTGACCATTTAATGATAAAAGTTCATGATGTAACAACTTGCCTGATCGGAGCAATGTggtgtttgtggttttttttacagaacagATCAGAAAGTCACTGACACAACAAAGTACTGGTCCAAATTTCTCCAAAACCGTGACACTTTTTGTTGCTTTCAAGTGTAGACAAGGGTTAAGGCCATGACCAGACAACAGGACAAAGAAGGCTGtgattattttgtacatttaatataattgtattgatttaatcctcttttttttttttttttttttttctcagatttgttgtattttattattgtagaaAAACTGCAGCCCATTTAccaattaaatattgaaaataaacacCTTTATTATTAAGTTACA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251016.1 lncRNA downstream 38559 7495614 ~ 7498788 (-) True LOC122345617
XR_006251018.1 lncRNA downstream 77236 7450377 ~ 7460111 (-) False LOC122345654
XR_006251019.1 lncRNA downstream 77236 7450377 ~ 7460111 (-) True LOC122345654
TU50073 lncRNA downstream 142115 7366250 ~ 7395232 (-) True G33990
TU50064 lncRNA downstream 200802 7334414 ~ 7336545 (-) True G33985
TU50121 lncRNA upstream 31220 7572160 ~ 7578212 (-) True G34025
TU50415 lncRNA upstream 102030 7642970 ~ 7644229 (-) True G34214
TU50458 lncRNA upstream 168965 7709905 ~ 7710223 (-) False LOC122345606
TU50461 lncRNA upstream 171103 7712043 ~ 7712494 (-) True G34248
TU50441 lncRNA upstream 176633 7717573 ~ 7760165 (-) True G34231
XM_043239858.1 mRNA downstream 564 7512317 ~ 7536783 (-) False scai
XM_043239857.1 mRNA downstream 565 7512317 ~ 7536782 (-) False scai
XM_043239859.1 mRNA downstream 565 7512317 ~ 7536782 (-) True scai
XM_043239861.1 mRNA downstream 566 7512317 ~ 7536781 (-) False scai
XM_043239860.1 mRNA downstream 567 7512317 ~ 7536780 (-) False scai
XM_043239849.1 mRNA upstream 302 7541242 ~ 7557708 (-) True myo1hb
XM_043239850.1 mRNA upstream 302 7541242 ~ 7552376 (-) False myo1hb
XM_043239896.1 mRNA upstream 17339 7558279 ~ 7561111 (-) False ungb
XM_043239897.1 mRNA upstream 17339 7558279 ~ 7561111 (-) False ungb
XM_043239898.1 mRNA upstream 17339 7558279 ~ 7561111 (-) True ungb
TU50081 other downstream 140194 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 414883 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 415498 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 594144 6930872 ~ 6943203 (-) False usp20
XR_006251011.1 other downstream 594155 6923430 ~ 6943192 (-) True usp20
TU50440 other upstream 178756 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50633 other upstream 870942 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 888760 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 1133609 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 1388530 8929470 ~ 8930053 (-) True G34580

Expression Profile