RNA id: XM_043239898.1


Basic Information

Item Value
RNA id XM_043239898.1
length 1390
RNA type mRNA
GC content 0.44
exon number 7
gene id ungb
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7558279 ~ 7561111 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCCTTTGTAAAGCTGCCCTAGACAATGAGGGCCTTCAAGGCGAAAAGGTTAAACTAGGGTCAAAGATGAACACATTGAATTTTTCTGCACCGAGCAATACCCGTTTCTCATAATGTTACCATTTTAGATTTCAAAACAAGATTGTGACAAACTGGTTAACGGTTACGGTCACGGTTTAGGAAACATGCTTTAGAGATGCAGTTTCACTTTCAGTTCAGAGTGAACTTGCATTTGCATGACACTGCAGAATAACGGTGATGCAGCTGTATTTGTAAAGGGGTCTTCACTGCCTTTACGCAACTCGCCtgtctttgaaaatcaaaagCCATTTCATAAACAGCTAGGTATGTAAGTGTACGCTATTCCTATCATTTCTTTGCATCAATGGCAACGCGCGTCGCAAAGAGCAAGCGTGTGGTGAGAACATGCAGCTCAGTGAGGAGCAGCTGCGTCAGATAGAGCAGAACAGACGCGCCGCTCTCGAACGACTGGCCAGCAGAAACGTACCTGTACCCGTTGGAGAAAGCTGGCGAAGACAAATCGGGGCCGAATTTGCAAAACCTTATTTTACAAAActcatGTCTTTTGTTACAATGGAGAGGAAATGCTTTACTGTTTATCCCAGCACCGAGCAGGTGTTTCATTGCACAACTTTGTGCGCAATTGAAGATGTAAAAGTGGTCATTCTTGGGCAAGACCCCTATCACCATCCAGGTCAGGCTCACGGTTTGGCCTTCAGTGTGCTGAGGCCTAAACCTCCTCCTCCTAGTTTGGAAAACATATTTGCAGAGTTGAAGGACGATATTGTCGGCTTCCGGCACCCGGGTCACGGAGACCTCACAGAATGGGCTAAACAGGGCGTTCTGCTGCTGAACTCTGTGCTGACAGTGAGGGCTCATCAACCCACCAGTCATGAGGGTCAAGGCTGGGAGGTCTTCACAGACGCTGTGGTCCTGTGGCTCAGCAGGAACCTCAACGGCTTGGTCTTTCTGCTTTGGGGCTCTTACGCTCAGAGGAAAGGCAGAGTGATCGACAGAaaacGTCATCATATCCTTGAGACTTCACATCCATCACCATACTCAGCAAATTTAGGCTTCTTCGGTTGTAGGCACTTCTCTAAAACTAACATTTTGCTTAAAGCATCAGGAAAGAAACCAGTTGATTGGAAAGCTCTTTGAAATAACATTATGCCattaattcttgttttttttttgtaaaacagagATGAactttacatattatatattgcaactgaatgtattgcattgcattgtacGGTACATTTACAATGCAAATGCGTCACAGCTGCCCCGTTGACCTTgttataatgtttgtttgttgtacTGCAAATATTCATATTAGCTGGGCAATAAATGAACAATGAATGA

Function

GO: NA

KEGG:

id description
K03648 UNG, UDG; uracil-DNA glycosylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251016.1 lncRNA downstream 59491 7495614 ~ 7498788 (-) True LOC122345617
XR_006251018.1 lncRNA downstream 98168 7450377 ~ 7460111 (-) False LOC122345654
XR_006251019.1 lncRNA downstream 98168 7450377 ~ 7460111 (-) True LOC122345654
TU50073 lncRNA downstream 163047 7366250 ~ 7395232 (-) True G33990
TU50064 lncRNA downstream 221734 7334414 ~ 7336545 (-) True G33985
TU50121 lncRNA upstream 11049 7572160 ~ 7578212 (-) True G34025
TU50415 lncRNA upstream 81859 7642970 ~ 7644229 (-) True G34214
TU50458 lncRNA upstream 148794 7709905 ~ 7710223 (-) False LOC122345606
TU50461 lncRNA upstream 150932 7712043 ~ 7712494 (-) True G34248
TU50441 lncRNA upstream 156462 7717573 ~ 7760165 (-) True G34231
XM_043239849.1 mRNA downstream 571 7541242 ~ 7557708 (-) True myo1hb
XM_043239850.1 mRNA downstream 5903 7541242 ~ 7552376 (-) False myo1hb
XM_043239890.1 mRNA downstream 17339 7537347 ~ 7540940 (-) True ppp6c
XM_043239859.1 mRNA downstream 21497 7512317 ~ 7536782 (-) True scai
XM_043239907.1 mRNA upstream 35174 7596285 ~ 7598895 (-) True iscub
XM_043239894.1 mRNA upstream 52778 7613889 ~ 7618964 (-) False zdhhc12b
XM_043239895.1 mRNA upstream 52778 7613889 ~ 7618501 (-) True zdhhc12b
XM_043239871.1 mRNA upstream 57986 7619097 ~ 7623472 (-) True uap1l1
XM_043239870.1 mRNA upstream 63013 7624124 ~ 7640250 (-) False slc25a25b
TU50081 other downstream 161126 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 435815 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 436430 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 615076 6930872 ~ 6943203 (-) False usp20
XR_006251011.1 other downstream 615087 6923430 ~ 6943192 (-) True usp20
TU50440 other upstream 158585 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50633 other upstream 850771 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 868589 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 1113438 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 1368359 8929470 ~ 8930053 (-) True G34580

Expression Profile