RNA id: XM_043239905.1


Basic Information

Item Value
RNA id XM_043239905.1
length 2219
RNA type mRNA
GC content 0.38
exon number 5
gene id zmat5
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7501635 ~ 7504656 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaatgtttggggtcaatcgtttttgtttgaaagaaatgaaattcTGATCTGTTAAATTGATAATAAGTGATGGCAAAGATTTATATTGTTTgaaatgatttgtatttttaacaaatgctgtCCTCGTTGacattctattcatcaaataatcctgaaaacaaatattgcagtttccaaaaaaatatttatacaaacattttcccaatattttaattcttttcatccccagattccagattttcaaataattgtatatCAGACAAATATCGTCCTATCCTAACATAgcctatttattcagctttcagatcaTGTATGAAtctcaattttttaaaaagtacccttatgactggttttgtggtccagggtcacatttattaaatatggttgttatatttatattatgacCTTCTTTAGATGCTTCTTTTTACAGCcacaaacatgtaaaaataaaaccatagcaatctgtacatttatatatgataacTCCACCCAAACACCACCAACAATTGTTGACAGCGCAGCACGAGTTTCAGTCTCAAATGTAAACGTGTTGTGGGCGGAGTTTGGCCGCTAGAGGGTGCTATACGTCACTGAACGCCGCGTCTGCGCAGCCGGTTTGTTGTGTCCGCCATATTGAATTTCTCACAGAAGAAGCGTGTCTTTCACCGAGGACGAGTTCTAAACTTATATCTAATCTACgtgaatcagtgttttgtttgGAGTATTACTCAGCGATGGGGAAGAGGTATTACTGCGACTACTGTGACCGCAGTTTTCAAGACAACTTGCACAACAGAAAGAAGCACCTGAACGGCGTCCAGCATCACCGAGCGAAAAAAGCCTGGTTTGACAACTTCAGAGacGCTGCCACGGTTTTAAACGAAGAGCGGACAAAGGAACCCTGTAGAAAGTTTCTCCAGACAGgACAATGCGTATTTGGCACAAACTGTCGTTTTTCTCACATGTCTGAGAGGCATATTAAGATGCTGGAGCAAAAGATTGATGATGAAAAGCAGCAGAAGGAAGACCCTGACCAAGATGGATCGTCTACTGGGCGTAGAATTGATGAATGGCTCTCCAGAAGAGAGAAGAAACTGGCTGCTTTGACATCAGGAAGAGTTTTAAAGATGGAAGAGGAAGAATGCGCTGAAAGCATTGAGATACCTGCATATTTGCTGTCTATTCCAGATCTTCCTCCATCTCTTCACCCCCCGCCAACTGGTGGTTGGAGAGTGACGCTACACAATGAATGGggttgaaatgtaatttacaaaagttattttattgctttttttctttaaggacATGCTGCTATCTTTTATCATTATAAAGCCATTGTATGCAAATCCTTATGAAGGAagttcacagaaaaataaactaaatttgctgaaaattttttttcaccctcaggCTGTCCAAGATCATTTTTTTGTTCCCGCCAATGCCTCCAAAATCTTCCATTACTTGCTTGCCAGtagattctctgcagtgaatgagcGTTGATCCATTAGTACGCAGCAAGCGATGTAACGCTAAATTTCTCCAAtcctgttcagatgaagaaacaaactcttggatggcctgagggtgagtgaatTGTCAGCTAATTTTTCtttctgggtgaactgtttcttcAAGGGCCaacagtgtgtatatatttgtgtcaAATTTTAAATCTGTGCAAGTTGAGGTGCaacaaaatcatgttttgcAAGAATAAACACGTTTGCATTTTGGACAGTTCATAGGAGTATTTTGAACAAACCCAGTGCAGtgaatttcataaaatgtgGAGCTGAAACTTGTGTGTTCGGAAAAAGAACGCAAtgttattttcttgtaaaagtTGACATAATTGATTGCTTTTATTTGCTGTGTATCATAAAGTTGACAGTGTTCCCAAGCTGAACGGTACACTATATAgaaagttattgtttttttctgcgTCTGTGTCGGTGGTGTAGATTAAAATTCAGATGAGGGAGGCGTTTTCAATTTATTCCTGATTGCTTGTTCCAAGGAGGTTTTGTACTGCTAGCTTGCATGGCCTGCACTTATAAAAGGTCTTATTGGCTAGATGCTTTTTGATGGTCTAGGTGAGATTAGCTACTTAATACTAGCAccggtgtgtgtatatatagctCGTGGACCTCTACTGATGCGTTCTATATGCATACTCTTGTGGAAGTATGACCAAATAAATTAAGCTAAACCAGCA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13152 ZMAT5; U11/U12 small nuclear ribonucleoprotein 20 kDa protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251016.1 lncRNA downstream 2847 7495614 ~ 7498788 (-) True LOC122345617
XR_006251018.1 lncRNA downstream 41524 7450377 ~ 7460111 (-) False LOC122345654
XR_006251019.1 lncRNA downstream 41524 7450377 ~ 7460111 (-) True LOC122345654
TU50073 lncRNA downstream 106403 7366250 ~ 7395232 (-) True G33990
TU50064 lncRNA downstream 165090 7334414 ~ 7336545 (-) True G33985
TU50121 lncRNA upstream 67506 7572160 ~ 7578212 (-) True G34025
TU50415 lncRNA upstream 138316 7642970 ~ 7644229 (-) True G34214
TU50458 lncRNA upstream 205251 7709905 ~ 7710223 (-) False LOC122345606
TU50461 lncRNA upstream 207389 7712043 ~ 7712494 (-) True G34248
TU50441 lncRNA upstream 212919 7717573 ~ 7760165 (-) True G34231
XM_043239901.1 mRNA downstream 21831 7475268 ~ 7479804 (-) True tescb
XM_043239874.1 mRNA downstream 32478 7461261 ~ 7469157 (-) True taok3b
XM_043239974.1 mRNA downstream 52177 7438835 ~ 7449458 (-) True myhz2
XM_043239975.1 mRNA downstream 72169 7419287 ~ 7429466 (-) True LOC122345653
XM_043240529.1 mRNA downstream 157498 7340212 ~ 7344137 (-) True c9
XM_043239858.1 mRNA upstream 7663 7512317 ~ 7536783 (-) False scai
XM_043239857.1 mRNA upstream 7663 7512317 ~ 7536782 (-) False scai
XM_043239859.1 mRNA upstream 7663 7512317 ~ 7536782 (-) True scai
XM_043239861.1 mRNA upstream 7663 7512317 ~ 7536781 (-) False scai
XM_043239860.1 mRNA upstream 7663 7512317 ~ 7536780 (-) False scai
TU50081 other downstream 104482 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 379171 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 379786 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 558432 6930872 ~ 6943203 (-) False usp20
XR_006251011.1 other downstream 558443 6923430 ~ 6943192 (-) True usp20
TU50440 other upstream 215042 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50633 other upstream 907228 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 925046 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 1169895 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 1424816 8929470 ~ 8930053 (-) True G34580

Expression Profile