RNA id: XM_043239910.1


Basic Information

Item Value
RNA id XM_043239910.1
length 4701
RNA type mRNA
GC content 0.44
exon number 16
gene id camkk1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7794750 ~ 7829765 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aacCCCACACCCCCCTCCTCCCTATCTCCAAGCTCCTCCTACTCCATCGTCATGGCGATGAGCAGTGATCCTGGTTGCGTGGGTGTGGACCCCGACCCAGACTCCTTCCAGACGACTGAGATGGCTGACAAGATGTCGGTGGTGTCTCTACGATCTGATCCCTCCTCCAGTGTAGTGAAGAATGGGACAGGTGTTAAGAAAGCTCCGCCCACAAGGCCACACCTGTCAGGCAGGAAGATGTCGTTGCAGGAAAGAGGAACGTACGTTTCTTCTGGGAGCGGGGCTGACCGCTATTCCCGGATAGCCAGACAGCCAACTATCGAGTCCAAGCGAGTGTCCATCTCAGACTCGCAGGATTGCATCCAGCTTAACCAGTACAAGTTAAAGAGTGAGATTGGGAAGGGCTCATATGGTGTTGTCAAGCTGGCGTACAACGAGGACGATGACAAATATTAcGCAATGAAAGTGGTATCTAAGAAGAAGCTGATGAAACAGTATGGATTTCCCCGCCGCCCTCCTCCTCGAGGTCCTAAAGCAGCCCAGGGGGAGCAGCCCAAGGTGCTTGGTCCTCTAGAGAGAGTTTACCAGGAGATAGCCATCCTGAAAAAACTGGACCACCTCAACATCGTTAAACTGGTTGAGGTGCTGGATGATCCAGCGGAAGACAACCTTCACATGGTGTTTGAGCTGATGCAGAAAGGCCCTGTGATGGAGGTTCCCAGCGACAGTCCGTTCAGTGAGGACCAGGCCCGCCACTACTTCAGAGACATTGTTCTGGGCATCGAGTACTTGCACTATCAGAAGATTGTTCATAGAGATATCAAACCGTCTAATTTATTGCTCGGAGATGACGGCCACGTCAAGATTGCAGATTTTGGGGTCAGTAACCAGTTCGAGGGTAATGATGCCTTGCTGTCCAGCACTGCTGGTACTCCTGCCTTCATGGCCCCGGAGACACTGTCGGACAACCGCAAGAGCTTTAGTGGAAAGGCTCTGGATGTGTGGGCTATGGGAGTGACCCTCTACTGTTTTGTGTATGGGAAGTGCCCATTTATTGATGAGTACATACTGGCACTTCACAATAAGATCAAGAGTAAGCCGGTGGAGTTCCCTGAGATGCCAGCTATCAGTGAGGGGCTGAAGATCCTGGTCACACGGATGCTGGACAAAAACCCAGACTCCAGGATCACCATTCCTGAAATCAAAGTAAATGGACCCTGGGTGACTCAGGATGGCACTGACCCTTTGCCTTTAGAAGAGGAGCACTGTACGGTGGTGGAAGTCACTGAAGAAGAGGTGCAGAACTCAGTGAAGTTTGTCCCCAGTCTGTCTGCTGTGATTTTGGTCAAAGCCATGTTAAGGAAGCGTTCCTTTGGGAATCCGTTCGAGTGTCCCAGCAGGAGGGAAGAGAGATCCATGTCTGCACCCGGCAGTCTGCTCATGGACTCTTGGCCGTTCCGGCCCTCTTTTAAACTCCAGCCCTCGTTAAGaaaAGGGAGCAGCGGAGAGGCTGGTAGAGAAGTTGAGCTCGAGGACTTGCACGAGGACGAACCACCCACCTCTTGAGAGCCTTCATGGATCTTGAAGAGTTCCTCATTGTCCTTCCATCCCTTTGAGCAGAAGATGATCATGACCCAAACTGCTCCACTACACTCCGTTTCCACCGACTTGAGGCTTACCTTGACATTGAACTGGATTCTGCTATTGCTAGTCATGCTTCAGGCTTTTCATCTTTGTGCACAAGAATCACTTTTCCTGCCTATGGTTCTCACGAAACCTGTCCTTGATAATCTGGCGGAAAACAATTTTCTCCTTCATACAGTACAATTTGGATCTTTCCATCCTGGAATTCCTAATAGGCCAGGTTTGTGTGAAAAACAGTGCATAAGACTACAGCATGGACAAAAGATGCTCCTACTTGGTGAGATGTCGATGCCATCATAACTTCTGTACATGTGTAGAAAATAACAGCAATGGCGTCTTgcctttttttgtatatgttaATGTGCAATTCTTAACCCTATCCATCGCGGCATGCCTGAAATACGGCCTTCTCCATATAATTGGTTCCATATCTCTgttgctttccttttttttttttcacaccgTAAAATTTCCTCATTTCATTCAGATACGATATATCAACACACACAGCGTCGTACTGTGAAACAAAGGGGCTTATGTAACTACTAGACACTAAAAGAGGCTCTCGTCTGCACATTCAGTCAAGTCTAGAAAACAGGGCTTTTCTCATACAGCGTGTTTGAGCGCTCGGTATAACCATTATCTGGAACAGGGCTTATTTTCCGTGTTCGTGAATGTCGCAAATACCGCATTCGGATCGCACCGGATGCAGGGCTCTCGCGTCGCAGCGCTTTGTCTCTCCGCAGGAACAGAATGTGTCATTGTTTACCGAGTCTTCACATTCCAAAAGGCCTATTTGTCAGTCAGCAGCGCTAACGGGCCCTCGAACTCACACGCAGGCATGCCACCGAGGCTAGCGAGTGTGCGCCGATGCGGAAAGAGAGGGAGTCACTTTCACTCATAACAGACAAGCCAATTGAGGGAAGGATCTGAATACGGTGTTTAGCCGTGCAGCGAAAGTGAACTGCCATTCAATGTCATCACGGTCCCTCTCGGCCTGTATTAACTCCGTCCAAAACAATACGCCCTTGTTTACATCGGATCGTCTGCCAGGCGAACCCATCATCCCTTGTTTTTGAACCGCGCATTGAAAGTACAAAGAGAGTCCAAATGGACACGTTGACGGTCGAGATATTTAATTACCAGAGTGGAGCACTCATATTAATTCGATTATTATGAAATTGTCACTGTGCGCGTTTCAATTTAaaaaggacagttcacccagaTATTAAATGGCATTAAATGTCAGTCTGTTTGGATCAACACAAAAACTTGCCTACCactgttttatgaaaatgataTGATGATATATCTGTTCAGAAGCAGAAATACCATATTTACACTGGTATTCTAAGTATTGCACAGTCTTGTGTTTCGGATGCCCAGTCGTCAGGGAGAAAAGGGAAGTCAAAccatgtttacatgcatttttgtatttaaatgctcaaatattATTGGCCATTTTTCAGAGACTACAAACAAAAAGTTGCATAAATCAAATTACATTGAAATTAGTATTCATCATATCAAAAATTTCTCTTTATGTGAACAGGCTTTTACTCTCTTTACTCCCTACTTCtggaacacaaaatgagatatttagcagaatgtccaagctgcACTTGTATCCTACCATTTccctttgtttatataaaaagagcAGCTTTTTCAGGGTGAACTGCCCCTTTAATTCCTTTTACGAGAATAAAAGTGGACTCAATCAGGTCAGCTGCCAATTATTTCCAGTAAACCGGTTACGCAAGGAGCCAGCGCTTACCGATGCCACTCATTTAGAGGACTCATTATTGCTTATATGAAGACGGATTGATAAACCACAGTGAACCACTTTCATTATATTCTCACTAATATCCTGAGCAGATGGTGGTCCATTTTTCTGACTCCTACACATTCTTCCcttcttctccctctctctctctctctctctctctctctctctctctttctctcgatGACCCTCTTTTAGGCGTACACTCTTTGTAGATTGCTTCTTACCCAAAAACCGAATTACACAGGAAAACCATTTTCAGTGCCAAACAACTACTGTTTTTTGGGTCTGTTTATATGGAGTATTTGATTAAATGGAGTCTTGTTTCTGTCATGTATTGAGATTCTGTATGTGGTACTCAGGGTCTGGACTCAGCTGTTCGGGGAATACAGAGAGATTGGAGTAGCATATTCTGTGTTCAGGAGCTCTagggtgtgtttatgtgtagaaatTCATCAAATGGTTTTAAATGGTCCCCAAACGCATTTGTCCATTCTGTCTCAAATGTACAATAGTCTTGTCAGTTACTTCTTGATGTATGCTATGCACCTGTTAGTGTCTTGACGTACGGCATGTCCTTTAACTTATAACCTTTTACAGACTTCCCTCTAGGTTTGTTATTCCTTTTGATATCTGCGTGAGACGAAACGACTAATGTTTAAACCCCTTTAAATTGTTTCCTGCAGGACTTTTGTATAAGCTAAACATATGCAGCAAGCCAATATGCCATACCTCTGTCTGAGCGATCGACTTGAGTGTGAAggctttctttttccttttccaggTTTCGGCTCATGTGCAATAGATGAGGTTTGATCATTTGTCTACCCACATTTACAAAGGCTTCTCTCGTTTAGAGGAGGGGAGAAAAATGTGGCCGTTTGTAGCTGCAAAACATTCTTGCTATCAAagcattatgctttttttaatttcccttTCTTGATTTAAAAGTATATCAGAATTGTATATAAATCGTAGAACACTGTCTCACTCATACCCACAGTTCGAACTGCCCAGTTATTTGTGTCAGAGTGCCTGATTTTACTGGTTATTTAAAGACATCTGTATTCTGCTGCATTGATctgaatgtaaacataaaaaaaaaaaaaaaaaaaaaaaacagacaaaaaagagCATGTCCCGAGAAAGCACTGAATGCAACTCTTACTATGTAAATATGTACCAAAGTATAAAGCATATAAAGATGCtattttttgcatgctttttgtaCACATAGACATAatcaaagacaataaaaatatcacaggTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K00908 CAMKK1; calcium/calmodulin-dependent protein kinase kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50441 lncRNA downstream 34585 7717573 ~ 7760165 (-) True G34231
TU50461 lncRNA downstream 82256 7712043 ~ 7712494 (-) True G34248
TU50458 lncRNA downstream 84527 7709905 ~ 7710223 (-) False LOC122345606
TU50415 lncRNA downstream 150521 7642970 ~ 7644229 (-) True G34214
TU50121 lncRNA downstream 216538 7572160 ~ 7578212 (-) True G34025
TU50476 lncRNA upstream 31710 7861475 ~ 7861829 (-) True G34260
TU50482 lncRNA upstream 106746 7936511 ~ 7937371 (-) True G34265
TU50497 lncRNA upstream 183582 8013347 ~ 8013551 (-) True G34275
TU50498 lncRNA upstream 183921 8013686 ~ 8013937 (-) True G34276
TU50512 lncRNA upstream 270721 8100486 ~ 8100700 (-) True G34290
XM_043239862.1 mRNA downstream 13805 7725961 ~ 7780945 (-) True si:dkey-220k22.1
XM_043239903.1 mRNA downstream 72992 7718565 ~ 7721758 (-) True si:dkey-220k22.3
XM_043239899.1 mRNA downstream 82926 7706970 ~ 7711824 (-) True LOC122345606
XM_043239865.1 mRNA downstream 154501 7624124 ~ 7640249 (-) True slc25a25b
XM_043238852.1 mRNA upstream 35372 7865137 ~ 7911974 (-) True atp2a3
XM_043238850.1 mRNA upstream 35372 7865137 ~ 7911973 (-) False atp2a3
XM_043238615.1 mRNA upstream 108406 7938171 ~ 7973561 (-) True zzef1
XM_043238512.1 mRNA upstream 146882 7976647 ~ 7992530 (-) True ankfy1
XM_043238516.1 mRNA upstream 163533 7993298 ~ 7999994 (-) True ube2g1a
TU50440 other downstream 73287 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 397597 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 672286 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 672901 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 851547 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 582117 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 599935 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 844784 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 1099705 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 1385743 9215508 ~ 9220507 (-) False vamp5

Expression Profile