RNA id: XM_043239924.1


Basic Information

Item Value
RNA id XM_043239924.1
length 6297
RNA type mRNA
GC content 0.48
exon number 40
gene id taf1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13392656 ~ 13407947 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTTccgaacaaaacaaacagaaacagaacGCACGCAGCTCAGCTGCTTCTGCTCGCACATTCAGCAGCGGCAGCTCATTCATTGTAAAATGAGTTAGAGTTTTCTTTATATCTGCTTTAAACAAAACTGATCTTGCGTATAATATTCTTTAACGCGACTAAGTTTGACGTTCATGCTTTCGCGCGTTCTGATTTAGCTATCTGCTAACAGCTAATCTACCGGGGTCAGGGAGTTCCTCCTTCGGTCATATTCTCACTCGAGCCCGAGGTTCCAGAGGCCTTCGAGATAACAGCAACAGAGGAGCAGaatGTCAGATTCAGACAGTGATGAGGACCAGGACCGGCCCTTCCACCTAACAGGGTTTCTCTTTGGAAACATAAATGAGAATGGACAGCTGGAAGATGACAGCGTGCTGGACACGGAATCAAAGAAGCATCTGGCTGGGCTGGGCTCTCTGGGTTTGGGTTCACTTATTACGGAGATCACAGCCAGTGAGGATGACACAGCTGAGCAAGAGCAAGACCAGGGCAACACTGACTCAGAAgGGTGGGTGAGAAGCACAGAAGATGCAGTTGATTACTCTGATATCAGTGAAGTTGCAGAAGATGAAACCCGCAAATACAGACAGGCCATGGGCAACCTGCAGCCATCACGGAGAACAGATGAAGAGGAAGATTACGATGCTGATTGTGAAGATGTTGATGCCAAACTCATGCCGCCTCCCCCTCCACCAAGTCAGCCAACCCTCGCCAAGAAAGAAGACACGGCCACTCAAAACAGCAGTGtgACAGATGAAGGTGATGGCATTATCCTACCTTCCATCATCGCTCCATCATCGGTGGGTGATAAAGTTGATTTCAGCAGTTCATCAGACAGCGAGAGTGAGAGCGATCGACCGTCTCAGGGTTCAGGAGCAGGAGGACAGGCAGGGTGTCTTACCCTCCCTCTTGCAGGCATTATGCAGAAAGATGCTGCTAAAGCCCTTCCTGGAGTCACGGAGCTGTTCCCTGAGTTCAGGCCTGGAAGGGTGTTGCGGTTCTTGCGGTTGTTTGGACCTGGTAAGAACATGCCATCTGTATGGCGAAGTGCTCGCAGGAAACGAAAGCGGAAGCAAAGAGAACCACAGTCTGACATGGCTACAGGTGACAATGAATCACAGCCATCTGAGCCAGGTGCCAAGAAAAAGTCAGGATGGGACTATGAGTAtgcaccaccaccaccaccggAGCAGTGTTTGTCTGATGATGAGATCACCATGATGGCTCCGGTAGAGTCTAAGTTCCTGCAAGTGTCTGGTGAAGGTGATAAGGTGTCTGAGGTACGGCCAAAGGTGGCTGAGTGGCGTTATGGTCCAGCACAGCTTTGGTACGACATGCTTGGCGTCGCAGAGGATGGCAGTGGCTTCCATTATGGGTTTAAACTCAGAGATGACCAAAAGCAAGACACTACAGAAACTGCAGCTAAAACTGCAAACCCCCCAGCTGCTGAACCAGTCAGTGAGCAGGAACCACAACCAGAAGCACATTCTGAGGAGGATGAAGCATCTTCAGTGCAGGATGAGGTGTTTTTAATGGTGACCCAACTGCAGTGGGAGGATGATATAATCTGGAATGGAGAGGATGTGAAACACAAGGGCACTAAAACTCAGCGTGCCAGtttggctgggtggctgcctaCTAGCATGACCCGCAATGCCAATGCTTACAACGCTCAGCAGGGTCTAAGTCGCAGTAATTCTCTGTTGGTTCCCCCAACCCCACCACCTTTGGCCAAAACTCCATCAATATCAGGCTCTAAGAGGGACAAGCATAATCATGATCATCAAGCTTCTCATGAGGATGACACTCCCTGGTTCTCCATATTCCCAATTGATAATGAGGAGCTTGTTTATGGCCGTTGGGAAGACAACATAATCTGGGATGACCAGAGCATGGACTGCCTCCCTTCTCCTCCCATTCTCACACTTGACCCCAATGATGAAAACATTATACTCGAGATTCCAGatgaaaaagaagagagagcCTCTCATTCACCCtccaaagaaaacaagaaagagaCAGCACTGAAAAAAAGTCGCATTCTGTTGGGAAAGACTGGTGTCATCAAAGATGAACCTCAACAGAATATGTCCCAACCAGAGATTAAAGATCCTTGGAATCTGTCCAACGATGAGTTCTACTACCCCAAACAGCAGGGGCTTAGGGGCACCTTTGGAGGAAATATCATTCAGCACTCTATTCCTGCTGTTGAGTTGAGGCAGCCTTTCTTCCCCACTCATATGGGACCTATGAAACTACGGCAGTTCCATCGACCCTCCCTTAAAAAGTACTCATTTGGAGCCCTGTCCCAGCCTGGCCCACATCCAGCCCAGCCTCTCCTCAAACACATCAAGAAGAAGGCTAAGATGCGAGAGCAGGAGCGTCAGGCATCAGGTGGAGGGGACATGTTTTTTATGCGCACAGCTCAGGATCTGACGGGCAAAGACGGAGACCTGATTTTGGCTGAATATAGCGAGGAGTATCCTCCCCTTCTCATGCAAGTTGGCATGGCAACCAAAATCAAGAACTACTACAAAAGAAAACCAGGTAAAGATCCAGGAGCACCTGACTGTAAGTACGGAGAGACCGTTTACTGTCACACTTCACCATTCCTGGGATCATTGCACCCTGGACAACTACTGCAGGCCTTTGAAAATAACTTGTTCAGAACTCCCATCTACCTACATAAGATGCCTGAGACTGATTTCCTGATTATCCGGACAAGGCAGGGCTACTTCATCCGAGAGCTTGTGGACATATTTGTTGTGGGTCAGGAGTGCCCTCTTTATGAAGTGCCGGGGCCCAACTCTAAACGAGCCAACACACACATTCGAGATTTCCTACAGGTGTTCATCTATCGACTCTTTTGGAAGAGTAAAGATCGCCCTCGTCGTATACGTATGGAGGACATAAAGAAGGCTTTTCCTTCTCACTCTGAAAGCAGCATCCGCAAACGTCTCAAACTCTGTGCTGACTTTAAACGAACAGGCATGGACTCTAACTGGTGGGTGCTGAAACCAGATTTTCGGCTTCCCACTGAAGAGGAGATCAGAGCGATGGTCTCTCCAGAGCAGTGTTGTGCATACTATAGCATGCTGGTGGCAGAGCAAAGACTAAAGGATGCTGGTTATGGTGAGAAATCATTTTTTGCACCCGAGGAAGAGAACGAGGAGGAATTCCAGATGAAGATTGATGATGAGGTACGCACTGCCCCATGGAACACAACTCGGGCATTCATTGCAGCCATGAAGGGGAAGTGTCTCCTGGAGGTCACAGGGGTTGCTGACCCCACCGGCTGTGGAGAAGGATTCTCATATGTTAAAGTCCCTAACAAACCCACACAGCAAAAGgaTGATCGAGAGCCCCAGCCAGTGAAAAAGACAGTGACAGGGACTGATGCGGATCTGAGacgtttgtctctcaaaaatgCCAAACAGTTGCTCCGCAAGTTTGGAGTTCCCGAGGAAGAGaTAAAGAAACTTTCCCGTTGGGAGGTGATTGATGTCGTCAGGACCATGTCTACAGAACAGGCTCGTTCGGGGGAGGGGCCTATGAGTAAATTTGCTCGTGGGTCTCGATTCTCTGTAGCAGAACATCAGGAACGTTACAAAGAGGAGTGCCAGAGGATTTTTGACCTGCAGAACAAAGTATTAGAGTCAACAGAGGTGTTATCGACGGACACGGACAGCAGCTCAGCAGAGGACAGTGATTTTGAGGAGATGGGCAAGAACATCGAGAACATGCTGCAGAATAAGAAGACCAGCTCTCAgctgagcagagagagagaagagcaggAGAGAAAAGAACTGCAGCGGATGCTTATGGGAGAGGATAATGAGCGAGAGAGAGGCCGCAAAGAAAGACGCAAAggctCAAGCGCCCTTTCCACCAGCTCTCACAAAGACGATGACGCTTCCTCCGTCACTAGCCTGAACTCGTCAGCAACAGGGCGAAGGCTTAAAATTTATCGCACATTTCGTGATGAGGACGGCAAAGAGTATGTGCGCTGTGAGACTGTACGCAAGCCGGCGGTTATTGATGCTTACTTGCGAATACGCACCACTAAGGATGATGACTTCATACGCAAGTTTGCACTATTTGATGAGCAGCACAGGGAGGAAATGAGAAAGGAACGGCGACGAATTCAGGAGCAGCTGCGTCGCCTCAAACGAAACCAGGAGAAAGACAAGTTTAAAGGTCCGCctgagaaaaagacaaagaaggCCAAAGAACGACCAGACCTGAAGCTGAAATGTGGAGCTTGTGGCGCTATTGGCCACATGAGGACCAATAAGTTTTGTCCATTATACTATCAAACCAATGCCCCGCCTTCTAATCCCGTGGCAATGACAGAAGAGCAAGAAGAGGAGCTTGAGAAGACTGTGATCCACAATGACAACGAAGAACTTATTAAAGTGGAAGGAACCAAGATTGTGCTTGGAAAGCAGCTCATTGAAAGtgCTGATGAAGTGCGGAGGAAATCTCTGGTTCTGAAGTTTCCCAAGCAGCAGCTTCCTCCTAAAAAGAAGAGACGTGTGGGGACAACGGTGCACTGTGACTACCTCAATCGTCCTCATAAGTCCATCCATCGCAGAAGGACAGACCCCATGGTCACGCTCTCTTCAGTGCTGGAGAGCATTATTAATGACATGAGGGACCTTCCTAATACATACCCGTTTCACACTCCTGTGAATGGCAAAGTAGTTAAGGATTATTACAAGATCATCACTAGGCCGATGGACCTGCAGACGTTGCGTGAAAATGTTCGCAAGCGCATGTACCCTTCACgggaagagttcagagagagTGTCGAACTCATCTTCAAAAACAGTGCTACATACAATGgtgtGAAGCATCCTTTAACCCTTGTCAGTCAAGCAATGCTTAATCTGTGTGATGAGAAACTTAAAGAGAAAGAAGAGCGTTTGGTTCGTTTGGAGAAAGCCATTAATCCTCTtctggatgatgatgatcagGTTGCTTTCTCCTTTATCCTCGACAACATTGTCACACAGAAGATGATGGCCGTACCTGACTCCTGGCCCTTCCATCATCCAGTAAATAAGAAATTTGTTCCTGATTATTATAAAGTcatcatcaaccccatggatcTGGACACACTCCGGAAGaacaTCTCCAAGCACAAGTATCAGAACCGAGAGGTGTTTCTTTCAGATGTTGGTCTCATTCACACCAACAGCGTTAAGTACAACGgaCCTGATAGTCCTTACACCAAAACAGCTCTGGAAATAGTAAATGTCTGTAAGCAGACTCTAGCAGAGTATGATGAGCACCTAACGCAATTGGAAAAGGACATCTCTACTGCTAAAGAAGCTGCTCTGGATGCTGCAGATCTTGAAAGCTTAGACCCCTTGACCCCTGGACCGTACACGCCTCAGGGTCGTCACGGCAGAGGCCGATTGGGCGAAGAGGAGTCTGATGTGGACATTGAAGGTTTTGAGGAAGATGATGATGGCAAACCTAAAACACCTGCTCCGGCTGAAGAGGGAGATCTGGACGATGAAGATGAcgaggatgatgaagatgatctCCTAATGCGGCCCCAAAGGCGTATGCATAgggatgatgatgaggaggaggatgatgaaggCTCCAGCCGGCCAGCACAGGCCAGTGTGCTCTACCAGGATCTGCTGATGTCAGATGCAGAAGACGACGCTAGTGAGGAAGAAGGCGATAATCCATTCTcctCTATCCAATTGTCAGAGAGCGGCAGTGACAGTGATGCTGAGCTGGGGCATCAAGAGAGCACCCGGATTGGACTAGAGCAGGAAGAGAGTATGATGTCTTACGAGGGTGAGGGACCTGACGGGGTAACGCACATGGAAGACAGCAATGTTAGCTACGGCAGCTATGATGATGGAGACAGTCAGATGCATAGGCATGTGTCCAGCCCCAGGACAGGAGAACAAGATGTAGAGGAGGTGTACGGGATAAGTGaagaggacgaggaggaggaagacgaACGGAGGAGAGGTCCTAGTGTTCTCACGCAGGCACAGCTTAGTGACGATGAAGAGGACAGTGAAGAATTCAGATCTGTAGGAGGAGACAGTGACATGGATTCTGACAATTAGCACATGCTGTCCAGGAGGTGATCATGGTGTTGCATATAACTGTATATTTTGTCCTGCTTTTATGGTTGTgttttacatgttatttttatatgactGTTTGAGAGGTTCTGACAACTTGATGAAGAATGTGAGAAATAAATTTTTATGTAAGAAATGAa

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53349 lncRNA downstream 18901 13370210 ~ 13373755 (-) True G36200
TU53204 lncRNA downstream 69434 13322931 ~ 13323222 (-) True G36108
TU53200 lncRNA downstream 75194 13317235 ~ 13317462 (-) True G36104
TU53144 lncRNA downstream 283708 13108699 ~ 13108948 (-) True G36063
TU53126 lncRNA downstream 335951 13055569 ~ 13056705 (-) True G36048
TU53392 lncRNA upstream 4697 13412644 ~ 13414387 (-) True G36230
TU53391 lncRNA upstream 6929 13414876 ~ 13418962 (-) True G36229
TU53385 lncRNA upstream 38674 13446621 ~ 13447119 (-) True G36227
TU53376 lncRNA upstream 154707 13562654 ~ 13563898 (-) True G36218
XR_006250978.1 lncRNA upstream 211079 13619026 ~ 13643314 (-) True LOC122345175
XM_043240077.1 mRNA downstream 699 13388012 ~ 13391957 (-) False zgc:158432
XM_043240076.1 mRNA downstream 699 13388012 ~ 13391957 (-) True zgc:158432
XM_043239540.1 mRNA downstream 88960 13270402 ~ 13303696 (-) True efnb1
XM_043238349.1 mRNA downstream 242118 13118367 ~ 13150538 (-) True rxfp2l
XM_043239671.1 mRNA downstream 341878 13020346 ~ 13050778 (-) False ophn1
XM_043238693.1 mRNA upstream 1315 13409262 ~ 13411836 (-) True rhogc
XM_043239503.1 mRNA upstream 109696 13517643 ~ 13521568 (-) True ckma
XM_043239657.1 mRNA upstream 157219 13565166 ~ 13568196 (-) True kptn
XM_043240104.1 mRNA upstream 171373 13579320 ~ 13582290 (-) False h3f3c
XM_043239037.1 mRNA upstream 204714 13612661 ~ 13618357 (-) True ftr84
unassigned_transcript_955 other downstream 16956 13375629 ~ 13375700 (-) True trnap-agg_13
TU53125 other downstream 337799 13053844 ~ 13054857 (-) True G36047
TU52956 other downstream 886698 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 1072971 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 1223329 12165410 ~ 12169327 (-) False sh2d1aa
TU53374 other upstream 171114 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 251130 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 252027 13659974 ~ 13699226 (-) False lrch2
TU53475 other upstream 309177 13717124 ~ 13718543 (-) True G36298
TU53529 other upstream 409795 13817742 ~ 13818942 (-) True G36336

Expression Profile