RNA id: XM_043239938.1


Basic Information

Item Value
RNA id XM_043239938.1
length 4969
RNA type mRNA
GC content 0.44
exon number 26
gene id pld2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14191695 ~ 14212317 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGTCTCATCAGGGTGTTGTTTGAACTGCACAGATGCTCGTTTATCGTCTGTGAGGATTCTGTGATAAGACGCTGCTTATCAATGCTGCAGCATCCCGAGTCTCATCTACGCGTGTTACGGTGGACACGTGGGACGTTTACGCCAGGCACAGATGCAGCAAACCTACGCCTCGGGAGTTGCGATGGGGGATAAGTTATCCAGAAGTTTGAGTCCAACTGGGAAATAACAATCGACGGAACTACAAGGTGTCAGACGAGGATCAATCGCGACAGTTTCCTTGGTGGTGAGTCGCGGTCCAGTAGCCTTATGGCTAGTTCTGAGACGGATGCAGCAAAAAGGTGGCAGAAATGTGTGGACACTGTGCTGTGCAACCTTACTAAGGATCAGTTGAAATCTATTGAAAGCAACAGCGAGGAACGGGACTTTTTTGTGGTACATCACCTGGCAGACCTGAAAGAAGGTTGCATCTCTCCTCTCATTCATGGCACACCTATCACCTGTAAAGTGGAAAACACAGAGCGGTACACCACCCGCTCTAAGGTACATGTATGCACTCTATACACTGTCCGTCTGACACATGGCGAGTTCACATGGATGGTAAAAAGAAAGTACAAGCACTTCCAGGAGCTCCACAGAGACCTgtacaaacacaaaatgatgCTGCAGTTCTTGCCTCTGGGGAGATTTGCCATTCAGAGACAACAGATGGCAAGTTTGACAGAGGAAATGCCAACTCTACATGGAACCGATAGAATCAGGAGAACGTCTAGCAAACCGaaatatCTGGAGGAATATTTAAACAACTTGCTAGAAAACACTTTCTACAAGAACTATCATGGGATGTTGGACTTCCTGGCAATTAGTCCACTGTCCTTCATCAGAGACCTTGGACCCAAAGGCCTtgaaggTTATATTCTTAAACGATCCGGGGGTCACCGGATCCAGGGGCTCAACTGCATAGGTCACCATCAAGTCTGCTTCCGCTGGTCTCGTCGTTGGCTTGTGGTGAAGGATTCGTTTCTTCTCTACATGTCCAGAGATACTGGTGTTTTGTCGTTTGTGCTGCTGTTCGACCCTGAGCTGAAGGTGTTGGTTGGACGTGTTTACACTGATACCAAGCATGGCGTCTGCATCGAGAACTTcagcaggaAGCTGGTGATTAAGTGCAGTAGCTACAGGCAGGCCCAGTGGTGGAGTCATGAGATTCGGAGTCTCGCTGAGCGCAGTGATTTTCTCCAGACGCATCGCTTTGAAGGCTTTGCCCCCCCCAGACCGGACACTCTTACAAAGtgGTATGTCAATGGAAATGGCTATTTCTCAGACGTGGCTGATGCCCTGGAACAAGCCAAGGAGGAGATCTTCATCACTGATTGGTGGCTCAGTCCAGAGGTTTTCCTTAAACGTCCAGCTACAGGAATGTACTGGCGTTTGGACAAGATTCTCAAACGCAAAGCAGAACAGGGcgtgaaggtgtgtgtgttgttgtatAAGGAGGTGGAACTGGCTCTGGGTATCAGCAGTGGCTACAGCAAGAGAACACTGATGAACCTTCACCCCAATATTAAGGTTATGCGTCACCCTGATCATGTTGCCTCAGTTGTGTTTCTCTGGGCTCATCATGAGAAAATGGTTGCCATCGACCAATCAGTGGCCTTTGTGGGTGGGTTGGATCTGGCGTTTGGGAGGTGGGATGACAGCGACTATAGGCTGAGTGATTTGACACCCTCAAAAACAGCCAGTAATGCAGAGGCTGCCCCAGAGTCTGATGCTGTGGATGGCTCTGCAGTTCCTCTGACGGATCTTGTGTCGGAGTGTGGTGATGAAGTGGATCTGAGCTGTAATGCCCTCTTGTGGCTGGGAAAAGATTATAGCAACTTTATCAAGAGGGACTGGACACAGCTGGACCAGCCCTTTCAAGaCAATGTTGACAGGACTCAGGTGCCCCGCATCCCTTGGCGAGACCTGGGTGCGGTGCATCATGGGAAAGCAGCCAGAGATCTTGCACGACACTTCATCCAGCGCTGGAACTTCACTAAGATCTTTAAGAACAAGTACAAGGATGACTTTTACCCATACCTACTGCCGAAATCTCACTGCACTGCAGATAAACTGCCATTCACCATCCCTGGTGCCACAAAAGCCTCTGTACAGGTTCTTCGTTCTGTTGATCGCTGGTCTTCTGGCACATGTGAACATTCCATCCTTAATGCCTATATACATGTTATTGAGAACAGCGAGCATTACGTTTATCTAGAGaaccaGTTCTTCATCAGCTGCTCAGATCAGAAGTACGTATTCAATACCATTGGTGATGCTATTGTCAAACGGATCCTACGGGCTCACAGTGAGGGGAAGAAGTACAGGGTGTTTGTCGTGATTCCTCTGCTGCCTGGCTTTGAGGGTGACATCAGTCAGGGAGGAGGAAATGCCATTCAGGCTATCCTGCACTTCACCTACCGAACGATCAATCGAGGAGAACACTCCATTCTCTCAAGATTAAAGGAGCACATGCAGGATGAATGGACACGGTACATTTCTCTTTGTGGTCTGCGGACACACTCTGAGCTTGGCCAGTCCCCTGTAACAGAGCTCATCTACGTCCATAGCAAAGCCCTCATTGCTGACGACCGTTGCTACATCATAGGGTCAGCCAACATCAATGACAGGAGCATGCTGGGAAGTCGTGACAGTGAGCTAGCAGTGCTGGTAGAGGATGAGGAAAGAGTTCCCTCAGTCATGAACGGAGAGGAGTACCAGGCTGGACCACTAGCACTTGCTTTACGGAAAGAGTGCTTCAGCGTACTTCTCGGAGCAACATCTGATCCGAATCTGAACATTGATGATCCAGTCTGTGATCATTTCTTCAATGACGTTTGGAACAAAATCGCGCAAACAAATGCCATCATCTATGAGAAGGTCTTCCGATGTCTTCCACTGGACTCCATCCGCAACTTGCGTGAGCTGCAAGAACATGTAAATTCTCAAAACCTCAGTCTTACCGACCCGGAGAAAGCCAAAGAAGAAATACAGGCCATCCAGGGCATCCTGGTCCATTTCCCGCTGCACTTCCTGTGCGAGGAGTACCTTCTCCCACCTCTTAAAAGTAAAGAACGAATGGTTCCTATGGAGGTGTGGACCTAGCAAGGAAGACTTTCCAGTGAAGCATGCCAGTGAAACAGAAGATTTCAGAGCTTAAAATATCACACGTCTGCTAACTAAGCTGGAAGCTATGGTGTTTTCTTTCAGCCACACTTTTTGTCCATTTTGGTTTGGACTAAAGTAATGGTAGTAAATGGATGATTAGCTCTAAACACTAACGAAATTAGTGTAGAAacgcaaaaaaaatgttcttgcaTAAGAAGATAAACGTGTTTATACCAGGAGAATCACATAATGTAGTTGCtaattatatgaaaatacaatgaaattaaaagaaaaaattccaAATGGCCATTACGACCACGATTGGCACGATCTATGTAGGTAAAATGGCAGAGAATTAAAAGTGCTGCATATCAAATGAGGAAAGAAGAGCGAATCAGgcgaaaaagagagagagagtattttTGATGACCGAGGAACAGAACGTACATTTAttgttgtgaatgtgtgtgggTGGATGGTGCTGCTTTACCtccttttccctctctctttatttctttcttgtgtGCACTACACCTCTCAATGCAGTGGCAGCAAATCTGTCAGAACATTTGTGGTTGTTATGGTGACGGGTATAAAGAGCTGACTTGGTCTTGgctgctgagagagagagagagagatagagagaacgAAAGAAAGAGGCAGGAAGAGATTGAGAAGAAGCAGGAAAAAATAGACGAACCGTAAAAACACGTAtaactgtgtgtgcgtgtcgaGGCGAAGGGTATGCTGGCATACTTGGTCAGAGaaattatgtaatgttttttttttgaaacaggtAGAGGGGGAGTGTTACGGAGCAGGGATCAGGTGGGGCTTCAAACATGGTGAGATATTCAGGGGGAGTCTCAGCTCAACATTTATCACCCCCTCAAATCTCCATGACAACCAGGAGAAAttattgttatgtaataatgtCAGCAGCCCAGAAGATTCCACTTTTGGTTTTTTGGAGGGGGTGTTGACACAAGTAGAGAGTACACTGGAGGCCAAACAAGCAATGCTAATTTTGTCCGTGCCCCACTTCCACGATCACTAATCTGCGTGTGTAATGTTGTAGAATGTTATATAGTTGACATCGTCTGCACTTGAAGAGAATGTTTTAGTGTTTGACCACTGGAGACATGACCGTTATTATACTGTAAACATTCCAATCGCATCAAGCAATCACCTTTATGAAGTAACAGTTCTGAtctttttaaatttctattCCTATTAAGGCATATTAACATATCtgcttttgcacattttatactttatttacataaaattgcttttatttaaaaagcaaaactcaCTTACTAATACTTAAATGAATCTTGGCTAACACTATGTGTTTTCACAACTTTTGGACATCTGCATAGGCCTTTCCTAGGGTAGATGCCAAACTGAATTTTCTTCAGATGAAAATTATGCTGTGAACAGTCTTTACAATGGCATGCactctttcaaaacaaactcactattattatgttttttttgttttacggaggttttgttttaaatattatttttttgtaagctAAACAAATTGCTTGTTAAACAGTACAATCAGTTGAACAAACTACACTGCTTTCCCTCAcagctttgttttcatttctgtcaGAAATTAAATTTGGTGCTACCCTGACTAAGGTTTAtaagtgtgtgcgtgttttttttttctaaatgtacaaGATAATTTTTGGATTGATGACTATAAATATGTATCACAGTTGTTTGTAAACCGGTGAGCAATCAAATTTTTTCCCTCCATCTAACTTCTATCATatggacatttaaataaatgtattaattcacaagt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01115 PLD1_2; phospholipase D1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53602 lncRNA downstream 214625 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA downstream 214625 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA downstream 214625 13975352 ~ 13977070 (-) False G36385
TU53531 lncRNA downstream 372361 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 478275 13712680 ~ 13713420 (-) True G36297
TU53878 lncRNA upstream 63779 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA upstream 67357 14279674 ~ 14282516 (-) True znhit1
TU53914 lncRNA upstream 98307 14310624 ~ 14310860 (-) True G36561
TU53915 lncRNA upstream 98645 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 99451 14311768 ~ 14320994 (-) True G36537
XM_043240386.1 mRNA downstream 1223 14156523 ~ 14190472 (-) False mink1
XM_043240384.1 mRNA downstream 1223 14156523 ~ 14190472 (-) False mink1
XM_043240385.1 mRNA downstream 1223 14156523 ~ 14190472 (-) False mink1
XM_043240383.1 mRNA downstream 1223 14156523 ~ 14190472 (-) False mink1
XM_043240382.1 mRNA downstream 1223 14156523 ~ 14190472 (-) True mink1
XM_043238279.1 mRNA upstream 342 14212659 ~ 14220080 (-) True chrne
XM_043238378.1 mRNA upstream 13673 14225990 ~ 14238346 (-) True atp1b2b
XM_043238372.1 mRNA upstream 28022 14240339 ~ 14274137 (-) True LOC122344799
XM_043238380.1 mRNA upstream 67964 14280281 ~ 14282620 (-) False znhit1
XM_043238379.1 mRNA upstream 67964 14280281 ~ 14282620 (-) False znhit1
XR_006250968.1 other downstream 134990 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 134990 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 182159 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other downstream 182159 14003214 ~ 14009536 (-) False tmprss13b
TU53547 other downstream 343636 13846378 ~ 13848059 (-) False LOC122345901
TU53907 other upstream 79746 14292063 ~ 14302381 (-) True LOC122345141
XR_006251010.1 other upstream 993634 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 1083701 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 1137699 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 1360794 15573111 ~ 15574817 (-) False alkbh2

Expression Profile