RNA id: XM_043239939.1


Basic Information

Item Value
RNA id XM_043239939.1
length 1068
RNA type mRNA
GC content 0.51
exon number 8
gene id zgc:101858
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20127887 ~ 20130221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgCAACAGTAAGTCTGATataaaaatgaagacaaataTACTCTGGCACAAGAAAACAGAACAATGCGAGTAATATTTGTCTTGAGAAAGTAAAGGACTGAACCCTGAAATGCCCTTATCGCACGTGCACGTGACGTAACTGGTTCACTCGCACGTGAGcgaaaggaaaaataaaaggcCACTCAAGAGCTGTGAATATCATTTAAATCGAAATGGCAAGTCCAGACGCGTTCAAAGTTGGCTCTTTAAAGGGCAAAGTGACGCTGATCACGGGCGCCAGCTCGGGGATAGGAGCGGGCGCGGCGGCGCTGTTCTCCAGGCTGGGCGCTCACCTGGCGCTCAATGGACGCGACGTGGACAACCTCGCCAAAGTCGCCAAAGAGTGCGAGGCGCGGGGGGCAGTTAAACCCCTGTTAGTGCCGGGAGACTTGACAGATGAAGACACCGTGAGGAGGACGGTGGAAGAGGTCATCGCTCACTTTGGGAAGCTGGATGTCCTCGTCAACAGTGCAGGAATCCTTGCCATGGGCAGTATAGAGACAACAGACATGGCCCAGTATGACAAGGTCATGTCTGTCAATGTCAGATCGGTGTATCATCTCACTCATCTCTGTGTGCCTCATCTCATCAAAACAAAAGGCTCGATTGTGAATGTGTCCAGCGTGAATGGGCAACGATCATTTCCTGGTGTACTGGCCTACTGCATGTCCAAATCAGCCATCGACCAGTTCACACGCTGCGTTGCTCTTGAGTTGGCATCAAAGCAAGTGCGTGTCAACTCAGTTTGCCCAGGAGTAATTATTACCGAGGTTCACAAGCGTGCGGGACTTGACGAGGACCAGTATGCTCAGTTCCTTGAGAAGTGCAAGGTGACCCATGCTCTCGGCAGACCAGGTGAAGTAGACGAAGTAGCTCATGCTATCGCTTTCCTGGCATCTGATGCGGCAACATTTATAACAGGTGTCAATCTTCCAGTGGACGGAGGTCGACATGCTATGTGTCCACGGTAATGATTCGCTGCCACGATAACGGCTGCCAGAAGCAAAGAAATAAACCAAGTTGGAATCGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56164 lncRNA downstream 72089 20053350 ~ 20055798 (-) False G38058
TU56076 lncRNA downstream 171225 19956428 ~ 19956662 (-) True G38019
TU55943 lncRNA downstream 424202 19703420 ~ 19703685 (-) True G37928
TU55941 lncRNA downstream 425544 19702069 ~ 19702343 (-) True G37926
TU55882 lncRNA downstream 617605 19505921 ~ 19510282 (-) True G37877
TU56332 lncRNA upstream 25560 20155781 ~ 20160794 (-) True G38147
TU56349 lncRNA upstream 146447 20276668 ~ 20279101 (-) True G38156
TU56353 lncRNA upstream 154402 20284623 ~ 20286229 (-) True G38158
TU56356 lncRNA upstream 167087 20297308 ~ 20677930 (-) True G38161
TU56326 lncRNA upstream 265416 20395637 ~ 20396293 (-) False LOC122345844
XM_043240344.1 mRNA downstream 18649 20095469 ~ 20109238 (-) True ptgs1
XM_043239704.1 mRNA downstream 52179 20071282 ~ 20075708 (-) True pmpca
XM_043238273.1 mRNA downstream 66690 20058275 ~ 20061197 (-) True ptrh1
XM_043238766.1 mRNA downstream 87718 20035492 ~ 20040169 (-) True cfap157
XM_043240674.1 mRNA downstream 204707 19865019 ~ 19923180 (-) False kcnt1b
XM_043239940.1 mRNA upstream 238 20130459 ~ 20131947 (-) True ppil3
XM_043239941.1 mRNA upstream 1963 20132184 ~ 20138436 (-) True lrrc8ab
XM_043240337.1 mRNA upstream 42022 20172243 ~ 20185023 (-) True olfm1a
XM_043240318.1 mRNA upstream 149293 20279514 ~ 20285219 (-) True LOC122345833
XM_043240335.1 mRNA upstream 168925 20299146 ~ 20300348 (-) True LOC122345847
TU56325 other downstream 497 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 72089 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 192311 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other downstream 192311 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other downstream 192311 19868814 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 798929 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 1234017 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 1482467 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1678792 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 1747935 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile