RNA id: XM_043239952.1


Basic Information

Item Value
RNA id XM_043239952.1
length 3219
RNA type mRNA
GC content 0.52
exon number 14
gene id srrm3
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31506479 ~ 31567684 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGCGCCGCGGTGGCTCCTCCCGTCCGCCGGAGGGCGCTGCGTCTTCCCCGGCTCGGCTCCGCTCGTCTCTCGCGCTCCAGCACCGAGCGTTCAGCACCGCGAGCGGAGGACAGCTCCCGAGCCTCCGAGAAAAACACCGCAGACCGCCGCAGAAGCGCTTCAGCCAGCCTCGTCTGCTTCCGCGCGACCCACCGAGCGCCGTGGCCATGTACGACGGGGCGAGGGTTCCCTCCCCTGAGGACGGTGCTAACGGGGTCCCTCTGCAGCCCGAGGCCCCTGCAGACCGTCCCAGAGCCGACGAGCAgcctgaggaggaagagggagTCCCGCCCGAGCCTGTCCTGGTGAAGAAGGCTCACCGCGAGATTCTGGACcatgagaggaagaggagggtgGAGCTGAAGTGCATGGAGCTTCAGGAGATGATGGAGGAACAGGGATATTCCGAAGAAGAAATCCGGCAGAAGGTTGGAACATTTCGGCAGATGCTGATGGAGAAGGAGGGCGTGATAACTCGAGAAGGCTTGCACCCTCGTCCACCGGTTAGGCTGCTTCCTCACGAGGATGAAGATCACATGGGAAATGCCGCGTACATCGATGGATATGAGGAAGACTATGATTGGGATGGAGAATATTACGAGCAAGATTCAGCTGCCTACGATGAATGCAGATCCAAGAGGAAATCCAGCAGTTCACCTTCCCCTCGGCcaaagaagaggaaaaagaagaaggCAAGGAGACACAGTCGAGCTGACAGCCCGTCTCCAACCCGCAGAGACAAGAGGAAGAAAGGCGGAAAGAAACACAAGagagacagGTCTACATCTGGCtcaaggaggaagaggagacaCAGATCTGGGAGccccaaaaacaaacacaaagacaagaacaaacagaaaaagagGTGTTCGGTGGAGTCTCCCAGCAGGAGTTCTCAGCACAGAGGCAGCTGCTGTAGTTCCCGCAGCGGATCCGTCTCCTCCACCGCCAGCGTCTCCAAATCACCCAGCAGATCAAGTGCAAAGTGCAGGAACGACAGGCACAAACAGGAAGGAAGTCACTCCAGCCACAGCCCACCGCCGTCCCCCAGCACTGATCAGCCAATCACGTGGCAGAATGGGAACCACAGCGTCCGTGTACGCAATGGCAAAGATTCAGGAGCCAATCACACGGAGGGGAATAAAGGGATCGATCTTCGCTCTCTGGCTCCGTCTCCCTCGAGCGCGCAGACGCACGCGTCGCCTCATCTAAGAGGTGCTAAACACCACGCCGACCGCCCCAGGAGCCCCGGAGGAGCAGCGGCGCAGACGGCAGAGGACGGCTGCGCAGACGACAGGCCGGCGACGGGCAAAGCGCTCTCAGACGCGGCGGGGAGACGCGGCGGGAGGCCCAGGCTTCGAGAGAAGACGTCGCGCTCGCCGGCCCACAGCACTGACACTGAGCCACACACCAAAACCAAGAATCAGAAGAAAACGAAAGGATCTCATTCGTCGAAGCGGCACCATCGCGGACGCGGCCAGAACCATCACCGGAGCTCCTCGGTGTCTCCGGGTCGACACAAACACACGtccaagaagaagaagagcaagAGCCACGGGACGAGCCGGCAGAGGAGCAGCTCCTTCAGCAGCGGGAGGTCGTCGTCTCGAGGACCCAGCAAGAACAAATCACCGCACGTCCGACAGAACAACTCCAGGGAGAGAGACAGTCCTCATCACTCGGATGCAGAACGAGCTCGGCGCCGCTCACGCAGCTATTCTCCCATCCGTAAGAGACGGAGAGACTCCCCCAGCTTCATGGAGGCTCGCAGGATCACCAGCGCCCGAAAGCGTCCCATCCCGTACTACCGGCCGAGTCCGTCCTCGTCCAGCTCGTCCAGCAGCTACAGCAGCTCCAGCCGCAGCCGCAGTCGCAGTCGCAGCTACTACAGCTACAGCAGCTCCAGCAGCTCCAGCCGGACGGGCCGGAGCCGGAGCCCCAGCCCCGCGCACAGCTACTACAGCCAAAGCAGCTACGACAGCCCCGGCTTCTGAGAGACGCCCGACAGACGTGCTAGCATGCAAAAACCGAACGCAAATGATAAGACGTGTTAAAGGTGAAGAGAGTAATTGCGCTCGCTCGGtacttttgtcttgttttccagtacaaatGTGGAGGAACGTTTTAAAGCGCTCCTGTTATGGGTAAAGAAAGtccatgcaaggtcaaaaaacacttcgttgtcttttaatatgcatttagcGTTATCTTGTTTGGTCAACGATTCTGTGGCAACATGAAAAACTGCTTGGGACTCGACTTCTTcgttttgagagacaataactaaCGTACATTatacggtgcactttcagatttaaaactaaaagatcattttcaaaaatccgtaacggggcactttaaaacaaaatacatcagGGTAACAAAACGgtgcatgaataaaaatgagtttatgcttaaaagcagaaaaaaatatcataaaactaaattgaatttaatgtgGAAGTCGTTATTTTTTTGACCACTAtcttcattttgcttttttttaaataaattttgatttatttattacatttagattacacATTTATACTGGAAAAATCCTGgctgagaatttttttttgccgtttataaatgtatttattattattatttattttttagcgtGTCTGACTCAAACTGGATTCTATTTAATTCATCTGTGACCGTGTGATGCAGAGCTCACCCCCTTCACCTTTAACATAGGCTTTGTTCGCTCAGAAAgcaaaaatcattattaacttgaaaattatttatttctgacgCAAATCCACTCTCTCCGATTTTCTATACTTCCGAAAGcataacaaatgcataaaatctGATTTTTCCAACCTCTCTTTCCGCAGCGactattaaagtaataataatgatgcttATGGCGTTATCGCTGTGGTAGATTATGTAGATGCACCAGATATGATGCATAAAGAGCACTGTCTGAACAAACACTTGAAGTGATCTTGAAGACTGGATTTGAGTGTTCAGTGCAAACTAAAGCATTTTAGGAAGCGAACTGATAAATAACTTTAATGTATTTGACGTTTAAAATCAGCTGTTCATTTCACTCAGTAAAACTGCtgactaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60683 lncRNA downstream 382 31423085 ~ 31506097 (-) True G40995
XR_006251025.1 lncRNA downstream 8385 31456500 ~ 31498094 (-) True LOC122345708
XR_006251024.1 lncRNA downstream 8385 31461934 ~ 31498094 (-) False LOC122345708
XR_006251026.1 lncRNA downstream 8385 31477391 ~ 31498094 (-) False LOC122345708
TU60685 lncRNA downstream 11210 31435649 ~ 31495269 (-) True G40996
TU60767 lncRNA upstream 79174 31646858 ~ 31648612 (-) True G41034
TU60752 lncRNA upstream 87899 31655583 ~ 31701818 (-) True G41023
TU60737 lncRNA upstream 116284 31683968 ~ 31684836 (-) True G41019
TU60730 lncRNA upstream 124182 31691866 ~ 31695788 (-) False G41018
TU60732 lncRNA upstream 124182 31691866 ~ 31695788 (-) True G41018
XM_043240695.1 mRNA downstream 3449 31498489 ~ 31503030 (-) True hspb1
XM_043239725.1 mRNA downstream 51971 31369810 ~ 31454508 (-) True LOC122345520
XM_043238678.1 mRNA downstream 156030 31346959 ~ 31350449 (-) False LOC122344987
XM_043238677.1 mRNA downstream 156030 31346959 ~ 31350449 (-) True LOC122344987
XM_043238259.1 mRNA downstream 309512 31191163 ~ 31196967 (-) True ca4a
XM_043238268.1 mRNA upstream 1096 31568780 ~ 31590397 (-) False LOC122344718
XM_043238267.1 mRNA upstream 1096 31568780 ~ 31590393 (-) True LOC122344718
XM_043238269.1 mRNA upstream 26793 31594477 ~ 31598310 (-) True LOC122344719
XM_043238270.1 mRNA upstream 26793 31594477 ~ 31598309 (-) False LOC122344719
XM_043238265.1 mRNA upstream 32541 31600225 ~ 31613830 (-) True LOC122344717
TU60335 other downstream 680121 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 680121 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 713760 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 809791 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 134769 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 153586 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 554600 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 646592 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 646608 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile