RNA id: XM_043239959.1


Basic Information

Item Value
RNA id XM_043239959.1
length 5000
RNA type mRNA
GC content 0.49
exon number 16
gene id clip2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22761711 ~ 22790807 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCTCCTGCTTAACGATCCTCATTTATTCAGCGACCATTTGCTCGCCGCTGACACACTTTCGGGACATTTCTAGGCACCCGTGTGTAAAAGAGCTCTCCTAAAATGTACCGGTGTCTGTGAGCCCGGCATCCCGTCCCGCTCTCGCTGCCAGCTGTAGCTCAGCATCCATATTTTTCGCATccgtgtgggagagagagagaaagcgagacagtgagagagagagcaaagggAGTGGCAGACGCTGACAAATCTCATGCCGGGAAGCCGACTGAGCCATCCCTGCACAGACCGTCTGAAGTTCGCCGGAGCCGACTTCTATATAACTGACAGGATTTGGACTTCATAAGTCCCGCAGGTAGAATGGAGAGGGATATCCGCCATCCTCACGTCTAGTGCCTCGAAAAAACCCTTAATAAGCTGCGAAACGTGAAGTTTCTCCAGTGGACATAATGAACATGCTAAAGTCCAGTGGCTTGAAGATCCCTGGCAGGGGTCCTAAACACTCCAGTCCAGTGGGACGAACAACCGCTGGCCCATCAACCAGTCCTGCGGCTCAAAAAGACAGTTGCCCCTACAAGCAGACGACTCCCACCCCTAGCAGCAACGCCTCAGACAAGTCCAGCTCCAAAGCCTCCGAGGTGGGTGATGAGGTGGCCGGGGACTTTGTAGTAGGTGAACGTGTCTGGGTGAACGGAGTCAAACCGGGAGTCATCGCCTATCTTGGAGAGACACAGTTTTCCCCAGGACAGTGGGCTGGAGTGGTGCTGAACGACCTGGTCGGAAAAAACGACGGCTCTGTCAACGGAGTGCGTTACTTCGAGTGCCAGCCTTTGCAGGGCATCTTCACCAGGCCTTCCAAGCTCACGCGACAACCCATCGGAGACGGGAGCGATGAGCAGCAGAACGCGCAGCTGCAGGGCGGCGCGGGAGCGTCTGGGCAGCGTGTGGTCATGCCACTCAGAGAAGGCATGCTCAACAGCTCCGTCAAAACCGGCAACGAGTCAGGATCCAACATGTCTGACAGTGGATCTGTGAAGAAAGGCGGAGAGAAGGATCTTAAGGTCGGAGATCGAGTGCTGGTTGGCGGCACTAAAACAGGAGTAGTGCGTTATGTGGGAGAGACTGACTTTGCCAAGGGCGAGTGGTGTGGAGTCGAGCTGGACGAGCCGTTAGGGAAAAACGATGGAGCTGTAGCTGGAACCAGATATTTCCAGTGCCCGCCCAAATTTGGTCTCTTTGCTCCAATCCACAAGGTGATCCGCATTGGCTTCCCATCAACCAGTCCAGCTAAAGCTAAGAAGAGCAAGCGCATGGCGATGGGGGTGTCGTCTCTGGCTCACAGCCCCTCCAGCTCCTCCATTAGCTCTGTCAGCTCTGTGGCCTCCAGCGTGGGGGGGCGACCCAGTCGTACCGGCCTGCTGACAGAGACGTCCTCGAGGTACGCGCGGAAGATCTCAGGGACCACGGCTCTGCAGGAAGCCCTGAAGGAGAAACAGCAGCACATAGAGCAGCTCCTGGCTGAGAGAGATCTGGAGCGGGCCGAGGTCGCCAAGGCAACCAGCCATATCTGTGAGGTGGAAAAAGAGCTGACGGCACTGAAGGCCCGACATCTGCAGTATGCAACGGAGGCAGAGAGCAACCTACAGCAAGCCCGAGCTCTGCTGGCAAGcacacagaaagacaaaatGGAACTGGCCAATCAGCTTGAAGAAGAGAAAAGGAAGGTGGAAGATCTTCAGTTCAGAGTTGAGGAAGAGTCCATTACCAAAGGAGACCTGGAGCAAACTACAGTTGAGGAGAAGAGTCGCGTTATGCAGCTGGAAGAAGAATTGGCGTTGCGCAAGGCTGAGGTCGAGGAGCTCCAGGCTCGGCTTCAGAGAGGTTCCTTCGGTTCAGGCACAGACGGTGGAGACAGCGGGCCAGGGATAAGCTCAGAGACTCTGGTTTTGCGGGAACAGCTTCTCTCTGCAGGCCGTGAACGCCGTGAAGAGAGCAGCCAGTTGCGAGAGAGGTACGAAGCATCCTTGAGCAGCAGCCAGAAGGAAGTTGAACGCCTTAAAGCCACAACGGAACGTCAGGGTCAAGAGATCTCCGACCTAAAGCAAAGACTTCAGCAGGCCACTCGTGAAAACATGGAGATGATGGACAGCTGGAAAGCCAAACTTGATGCTTTGGTTGGAGACCATCAACGTGCTCTAGAAGAACTGAAAGCCTCGCTAACAGGAGATCGTGGGGCCAGCGACAACATTGGTGGAGAGGGTGAAGGAACCACGCCTGAGATGAGAGCAGCTCTGGAGAGCTTAAAGATGGAGCAGCAACTGGAGTTAGAAAACCTGAAGGCCAAACATGAGATCGATGTTGCCGTAATGGCCAAAGAGCGAGAAGATCTGCGCGCTCGACTTCAGGAATTGCGGGATCAGCTAGAGGAGAATGAGGAGAACTGGAAGGTCCAGGTGGAAGCCAAGAGCAACCAGTATACTGTGGAAATCAAAGAGGTCTCAGAGAAGCTTCAGAAGGCGGAGTTGAGGATCAGTGAGTTCGATAAGTCCCATGAAGAGCATGAAAAGGCCGCCCAGCTTCTCAAAGAGCAGCTAGAGCTGGCTGAGAAGAAGATGGTAGATTATGAGGCCCTGCAGAAAGCTGAAGCTCAGAGTCGAGCAGAGATCCTTTCACTGCAAGAGAAGCTGAGAGTCAGTGAGAACCGATTGCAAGCTGTAGAGGCCGATCACACCACCCAGGATGTTAATATGATCGAAAATAATGACAACTCTGAAGAGAAGATGAAACTAAAACAGAATATGGAAGAAACTCTGGAGAAACTcacaaaaagggaaaaagaagTATCCACTCTAACAAGCCAAGTAGATGCCCTGAAGACCCAAATAACTGCCTTGGAGGAAAAGGTTCGCTTGGGAGAGAAGGCAGCAGATGGACTCTTTAAGGAAAAGACACGCTTGGAGGCAGAGCTGGAGTCCATGACCAAGAAATCCCATGATGCATCAGGCCAGCTTGTGATTATTAGCCAGGAGCTTCTGAAGAAAGAGAGgAGCCTGAATGAGCTTCGGGTGCTTCTGCTGGAATCTCCACGTCACTCTGCGGGAGTGGACCGGGACCTCAGTCGTGAAGTCCACAGAGCCGAGTGGAGGGTGAAGGAGCAGAAACTACAGGATGACATCAAAACTCTGCGAGAGAAACTTTTGCTGCTGGGTCGGGAGAGGGCGTCTCCAGACCACCGTCGATACTCGATGATGGACCCGTCTGCTTCAGACACAGAGGTGACCCGTCTGCGTCAAAGGCTGCTGAGCACAGAAGATGCCCTGAGGAACGCTCTGGAACACAACCAACACGTGGACCAGCTAGTGCAGGCCATGCGCACCCGACCGGACAAGAACCAGGCACATGCTAGTGCTAATTCTGCAAATGGAATCCATCCAGAAGACTCTTCCTTCGCGCAAGAGGAAGAACACTGATGAGGGCTAAAACGGTTCTCGGACGTTTAGGGAGGAATGGAGGTGCATTGGGAAAGAAGCCAATTTGATGCCTAGACCTTTGGACTAATGCTTCACTGGAcatcttattttctgtttacagTTAACACCAAAACAATGACTTTACAGATGAACAAACAGAAACCACAAATCGAAGAATATCTAAAATGATCCGAGATGCTATAAAAAGTGGTTTTTAAGGTCAGTGGTACAACACGGACAGACCGACACACCGATCCTGTAGACTACCTCCGAGATGGACAACAATGTCTGACTTAACATACGAGAGAGAATGTTGGTCAGGATACTTGAATCCTCGGAAAATCCAATACCCTGCTATTCTCTCAGTTGGCCGTAACCGTTTGCagtttagaaaacatttttggcCTCAATTTATACCGTTTAATTTATTTGCCGtctatgctttttaaaaatggtatatTCGAAGAGAGAAACTGGCCAACTGAGGTTTAAAGTCTGGTCACTGGTCACTAGATACTGTAGCAAGCAAGTAAATAAACCAGAGAGGCTCCCTTATTCCATTCCTGCTCAGTTTTGTGTTGATTTTCTTTATCGGGACATGAATCTTAAGGTATGAATTATACAGTATTCCGCAACCATGTTCAACAGAATTAGCAAGTTAAGGTGCACCGTAAAGCTTCAAGAACCAGTATTGCAGATTCAGTCAATATTAGCGCATACTTTTgtgatattataaaatattagccCACAATGCCAACTCCTGTCCTGTGGTTCATTTCAATGAACAGCGAACCAACGGCTTTTGTTTCTTTCGGAATCATTTGCCGAACCGTTCGATTCTTTTAAGTTCAGACTGGAGACTCTTTTCTTGAGACTCTTAAGAGGAAGTACTACATGCACAATTTGTAGCCGAATTTAACAATTTTGACTATGAACTGTTTTTCATTGCAATGACATTTTGCCcaaacgatatatatatatttacctgGATTTGCCTTTTTAAGTTCATCTTTACAAAAGTTTACACACACAGCgttgtatttaatattgaaagtaaacaaccttttttaacatttaagtaaatgtttttttttgttcatatgcaAGTATTTTGATAAAAGGAAAGGATCGACCTGTAGTACCTCCTTTTGAAAGATCAAGAAAGACTGTATCAGATTTCTCGATCCATACACGCCTTGTAgtaacaaatctaaaaaaaacataaccgGTATTCCAGAACTgattgtttcttttgaaaaaccACGTTGATGAAATACTGTGCAATTAGGTCACGTTTGTTCATTAGGCAACTTTATACTGAAGCGATTGTCATTTACAACCAagaaagcattttctttttcaaaaagaaTAGGGAAAATGATAGGGCTGGCCCCAAGTTTTGCAGTTGACGCTGCTTTAGATTGCGGTTGGATTCaataaaaatgccttttgtCTGTTGGGAAGCAGTTCACTCACCACTTGCTGTAATGGTTCCCAAGAATCagtaattaaacattaacaaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250931.1 lncRNA downstream 720444 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA downstream 720448 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA downstream 720492 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA downstream 720492 22038380 ~ 22041219 (-) False LOC122344815
TU57036 lncRNA downstream 751604 22008886 ~ 22010107 (-) True G38543
TU57176 lncRNA upstream 884 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA upstream 904 22791710 ~ 22793053 (-) False G38634
TU57216 lncRNA upstream 83165 22873971 ~ 22876437 (-) True G38658
TU57350 lncRNA upstream 245651 23036457 ~ 23037470 (-) True G38747
TU57383 lncRNA upstream 336413 23127219 ~ 23131999 (-) False nrgna
XM_043239149.1 mRNA downstream 1933 22738083 ~ 22759778 (-) False gtf2ird1
XM_043239150.1 mRNA downstream 1934 22738083 ~ 22759777 (-) False gtf2ird1
XM_043239148.1 mRNA downstream 1934 22738083 ~ 22759777 (-) False gtf2ird1
XM_043239147.1 mRNA downstream 1935 22738083 ~ 22759776 (-) True gtf2ird1
XM_043239482.1 mRNA downstream 25050 22720728 ~ 22736661 (-) True dtx2
XM_043240617.1 mRNA upstream 2699 22793505 ~ 22823866 (-) False rasa4
XM_043240616.1 mRNA upstream 2699 22793505 ~ 22823863 (-) True rasa4
XM_043238401.1 mRNA upstream 35503 22826309 ~ 22831734 (-) True upk3b
XM_043238402.1 mRNA upstream 41837 22832643 ~ 22835323 (-) True prkrip1
XM_043239969.1 mRNA upstream 53940 22844746 ~ 22874871 (-) False vps37d
XR_006251119.1 other downstream 721677 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 801827 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 877689 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 877689 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 935606 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 811438 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 961074 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1096497 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1406899 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1797222 24588028 ~ 24594116 (-) False anapc2

Expression Profile