RNA id: XM_043239960.1


Basic Information

Item Value
RNA id XM_043239960.1
length 3774
RNA type mRNA
GC content 0.44
exon number 16
gene id mtmr12
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15280214 ~ 15292882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTTCAGCCAAAGGAAATCGCGCCGGAGAAAGGAGAGGtggagagagagcgcgagagggAGAGGAAAGTTGGGCTGCTCGAGCGCTCCCGGATTTCCACCTGACTGCTCGGGAAGCGGGACACTGGGACAGGCAAAATGTTGAGTTTAGGGAGCGGAGGAGCGAAGTCCACTAAACCGTCATTTGTGTCTTATGTCACACCCGAGGAAATAAAATTGGAGAAAGACCCaccaaagaaagagaaacatccTGATTTGCTACCAGGTGAAGTGGAGTTCTGTAGCGCCAACCCCATTCTCAAATACACTCAAGATGATCTCTCCCAGCGTGGCGTCTTTGGCACATTGTTCTGCACCAATTTTCGTGTTACGTTCATTAGTGATGAGGCACCACAGGAGGAGACGGCCAAGACCTTTAAGAACAAACTCTACGGAGAAAATGACATCCCTTTAATGTGTGTGGATCACATCTATGGTgtttatgatgaaaagaaaaaactgataACAGGAGGCCTTGTGAAGAACAAATATCCATCTAAAATGATCATTCACTGTAAAGACCTACGAGTCTTTCAGTTCTCTTTGACATTCACTAAGGAGGAAGATGCCAAAAAGatctTTCAGGGTATTGCTCACCATTGTTTGGAAGAGAAATCTCTGAAATGTGTCTTTGCCTTTTCCTATATGGGGACGCCAAGCCCAGAAATGCCGCGGAGACAGGAGACAATTATGTTTGACTCAACAGAGGACTGGACCCAGGAAATGAAACGGACAAAAGCGAACTGTAGATTAGTCATTGAAAATGAGAACTTTGAACTCTCTCAAAGGTTACCGAAGTACTTTGTCATCCCATCAGCACTAGGAGATTTATTCAGCTACCAAGGAAAGGGATTACCAatttgGTGTTGGTCTCATCACAGCGGTTGTGCTCTCTTCAAAGCATCTTTCCTGCCTGTGACACAGGAAGATGGGGATTTCCAAAAGCACTTGGACACaatgataaATGCAGTTGCACATAATTACCTTTACTCTGTAAAAACAGAGGACCTTTCAGAATCACTTCCTAATATCCAAGACATCCAACAGTCGTATAACAAGTTTAAACAATTCTTTCTTATCGAAAATTCAACTGATTTTTGGTTGTCAGATGTAAAATGGTTCTCTTCCCTTGAAAGTTCAGGATGGCTAGACATTATAAGACAATGTCTCCAAAAAGCAGTAGAGGTGGTTGAATGTCTTGAAAAGGACAACACAAATGTTCTTATCACAGAGGAAGAGGGAACAGATCTGTGCTGTGTGATCTCCAGTCTGGCTCAGATAATGCTCGACCCTTATTACAGGACACTGATAGGTTTCCAGAGTCTAGTGCAGAAGGAGTGGGTGGCTGGTTGCCATGCCTTCCTGGATCGATGTAATCACCCCCATCAGAAAGACAAGGAGTGTCATTCTCCAGTCTTCCTCCTGTTCCTGGAGTGCGTGTGGCAGCTTGTTCAGCAGCACAGCCCGGCGTTCCAGTTCTCCGAGACTTACCTGACTGTGCTGTCCGACAGTGTTCACGTGCCTATCTTTAGCACCTTCCTGTTTAACTCCGCTCATCACAGAGAAAGTTTTATGAAGGCAGAGTCACAGCTTACACAAAGCGGCCCATTGAGCTGCCCTACAGTGTGGGACTGGTCTGTGCAGTTTGACAGCAGGGCCCAGAATTTCTTCTTTAACCCCCTGTATTCAGAAAAGGTGAAACAAGAGAAAGTCGTACGCAGACCTCACAAGCCGAAGcaCCAAAGACAGTTGTCCTTACCCAGCACAGCTTTCAAAACCCCACTGAAGAAAGGTTTCTTTAAGGACGAGACCGACAGTCTTAAAAAGATGCTGCGTGTGAAGCGTCTGAGTCGCTGGATGGGGTCTCCAGACTCCCCCGCCGCCACCACCCGAGAGTTCTACGAGTCCTGGCAGCACCGTCCCCTGGACTACCACGGCCTCCTGCTCCCCTGCCTGGACGGACCGGCTGTCCGCGTCTGGATGCAGCGTTACCTGCGCTGGATACCTGAGCTGTACATCTTGGGCGGAGGCTCTGTGGCCGTCATGACCAAGCTCATGGAACTTCTGAATCAGGTGCAGGATCTGAAGCGTGTGCTGGAGCAAAGAGACTCGTCGCAAGCTGCTAAACTTGATCACCGTCCATACATTCAGCACCGGCTGCTCTCGTTCGGCTCCTCGGGACGACTGTCATCCTCATTTCCCTTCGCTTACACCCGCAACCGATCTTTCAAGCCCATCATTCCTACTGGTCTGATGCAGAGCCTTATGTTAACTGATAGTCTAGCCAGTCAGGAGGATGAGGCCAGTTCGGTTGTGAGTTTTGTTTAACAGAGAGTCTTTTTCGCATATAAAACATTCgtccatttattattaaattataatattgtgaGGTAAATACGGGATTATAGTTGCCTTGTCAGATTCAGATTAGGTGCTTAAAGTGCCTTTGGTGCTAAAGCGTGTCCTATTGTAAAGTAAAACAGGCTTTTGTCAAACCACATGTGCCCTACTGTATCGAAAACCTAACATGAGCCTTCGAACAGGATGTaagctcttttatttttgatgttcttAACGGAACAATAACTAGAAATGTTCTCTTGCTCATCACAAAACAGGAACAGGACGTAACCCTGAGCCTCCAGGCTTTCCATAGTGCTGCGTTACATAAAATCATTACCAGGTAACATTCCAAACAGTATTCCATTCCGGTGGTCTATGAATGGATGAAATTATTCTGAATGATAGCAGCCGTTATAAGAGTTACAGATATGCGTGTCTCCTAACATGTTACTGTACTCAGAGGGCTGGAAAAAGGCCTTAAAGCATGTTTCTGTATCTAAAGAAGGTTAGCCAAGGAAAATAGTGTGGAGCCATCTGCAGGGATATTATTGTTactgctgcatttaaaaatgtattgaagattacattataattactgTGGTCCAATGTGACTGCTCATTTATTTCCCTAGAGGCCAAGTTAACcctaataaatgttaataaattaattaggttaatattttttttcctaaagaAAACGTAAAACAGGAAGTAGGAACAATACATGAGATCAGCTGTCCCAGAAGTTCAGTGCTTTATTGCGTGTAAACCGTGGGGCTGTCTCATCCAGTCACAGGTTGGCTCTTAACACGATACAAGCGTCtgcaaatataattattcaaaCATAAGCTGATGCTGTATCTGCATTTGtgcacattttcttcttttcctttctgAGGTGCCTGTAGGACTTCTGCCATAAATCAACAAGCACTTCattcaaattgtgtttttcagcatttgaaatgtaatgaaaCTGTTATTTGCTGgcaaattttgtttttgtttacagcttTTTCACCCTCGTTTTGCACTACTGCTCCTTGCCAGTCGATCACTGTTACTTGAACAGTCAGCTGTAAATCTGATTCTGTTcacttcagttcagttcagcACTTCTGTTGTGTATAGCAAGTGACTGCAAGCTGGATTTTGAAACGATTACTGAACTTAATACTGtacaattgttttgtattttgctaTAACCAACTTTTAATGTTCACGTTCAGAGTTTGACCTTGAAATATATGATGTcggattgttttattttggaccATTGACTTCAAAGTGATAATTGTGATGTAAAAGAAGCATTAAATACCTTTTATATATGCACTTGAAAAAATGCTCCCCCCCAGAATATGATtgaaataaaagatgttttgcaATCATCA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007626 locomotory behavior biological_process

KEGG:

id description
K18085 MTMR10_11_12; myotubularin-related protein 10/11/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54241 lncRNA downstream 110856 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 374593 14905385 ~ 14905621 (-) True G36714
TU54099 lncRNA downstream 399149 14880865 ~ 14881065 (-) True G36708
TU54076 lncRNA downstream 581261 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 627821 14652095 ~ 14652393 (-) True G36631
TU54472 lncRNA upstream 268840 15561722 ~ 15562078 (-) True G36967
TU54473 lncRNA upstream 269266 15562148 ~ 15562363 (-) True G36968
TU54475 lncRNA upstream 271216 15564098 ~ 15565262 (-) True G36969
TU54502 lncRNA upstream 410870 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 420793 15713675 ~ 15713975 (-) True G36986
XM_043239676.1 mRNA downstream 942 15268676 ~ 15279272 (-) True golph3a
XM_043239713.1 mRNA downstream 15269 15205951 ~ 15264945 (-) True pdzd2
XM_043239714.1 mRNA downstream 34316 15205951 ~ 15245898 (-) False pdzd2
XM_043239109.1 mRNA downstream 80377 15174388 ~ 15199837 (-) True parp8
XM_043239110.1 mRNA downstream 89569 15174388 ~ 15190645 (-) False parp8
XM_043238862.1 mRNA upstream 974 15293856 ~ 15308440 (-) True zfr
XM_043240656.1 mRNA upstream 57134 15350016 ~ 15367413 (-) False npr3
XM_043240654.1 mRNA upstream 57134 15350016 ~ 15367413 (-) True npr3
XM_043238413.1 mRNA upstream 158142 15451024 ~ 15457371 (-) True eef2l2
XM_043239300.1 mRNA upstream 179210 15472092 ~ 15477073 (-) False akr1a1a
XR_006251010.1 other downstream 15269 15205951 ~ 15264945 (-) False pdzd2
TU53907 other downstream 977833 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 1223509 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 1223509 14045477 ~ 14056705 (-) True rnf214
XR_006251004.1 other downstream 1270678 14003214 ~ 14009536 (-) False tmprss13b
XR_006250970.1 other upstream 3136 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 57134 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 280229 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 280376 15573258 ~ 15574817 (-) False alkbh2
TU54499 other upstream 410870 15703752 ~ 15709388 (-) True cenpv

Expression Profile