RNA id: XM_043239961.1


Basic Information

Item Value
RNA id XM_043239961.1
length 4677
RNA type mRNA
GC content 0.48
exon number 19
gene id rabep1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22883355 ~ 22900893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGCGTGTTATTTCCACAATGACGTTGCTCAGTGTCTAGTAGCCTGTTCTGCTGGGCGCTCCTCGCTTTCCTTCAGAGAGCCGCTTTTCTAAACTCAGCCCCGGGAAACCATGGCCGAGCAGGCCTCGGGACCCACCCGGCCGTCTCAACAAGACGGGGTTCTGCAGCAGCGTGCGGCCGAGCAGGAGCAGGATCGAACTGACTTCCTGAAGCTCAAACAACAGTTAGAGATGGAGTTCAACCAGAAGCGGGCCAAGTTTAAGGAGCTCTATCTGTCTAAAGAAGAGGAGCTGAAGAGGCAGGCTGCTGTACTGGAGAAGGCCCAGGCAGAGCTGAGCAGCGTGCAGAAGCAGCTGGAGGAGGCTAAGGCGGAGATGGAGACCATCAAAGCGGTGGCCACCGTCTCTGAGAGCACGAAGCAGGAAGCCATCGACCAGGTCAAGCAGCAGTGGCAGGAGGAGGTGGCGTCACTGCAGGCTATTATGAAAGATGCGGAGCGGGAAGTGAAGCTGCAGTTCCAGCAGAAGCTGGAGCAGGAGCGCGCTCAGTGGGCACAGTACCGCGAGGGGATGGAGCGAGAGGTGGCCGAGCTCCGGCGCCGCCTCTCCGAGGGACAGGAGGAGGAGAACTTAGAGAATGAGATGAAGAAGGCTCAGGAGGACGCAGAGAAGCTACGCTCGGTGGTGATGCCCATGGAGAGTGAGATCTCGGCGCTGAAGGCCAAACTTTCAAGCTCACAAGATCGAGTTAAGGAACTCGAGGCGGCGAAGGTGAAGGAGCTCAATCACGTCCTGGAGGCTGAGAAATCATGCCGTACAGATTTGGAGATGTATGTTGCCGTCCTGAACACCCAGAAATCTGTCCTTCAAGAAGATGCAGAGAAACTTCGCAAAGAACTACATGAAGTGGTTCACCTGCTGGAGTTGGAGCGGCAACAGCACAATCAGCTGAAACACACTTGGCAACGTGCCAACGATCAGTTCCTGGAGTCACAGCGGCTGCTGATGCGAGACATGCAGCGCATCGAGAGCGTTCTGTCCTCTGAGCAGTTGAGGCAGGTGGAGGAGATGAAAAAGAGGGACCAGGAAGAGGATGAGAAGGAAAGATTGAGCCAGGCTAAAGAGGCCAGTGAGGATGATGGGACAGAGCATGCAGAAGCAGTGGAGGACTCTCTGCTCGGACTCTCCATAGAAgagTCCCACCTCAGCCAGAGCATCCACAGCTCTTTACACTCTCTGGACGCAGACACCCCAGGCCGCCCGGATGGCTCAGACCCTTACAAGGATGGGCTTCGGAGGGTGCAGTCCACCGACAGCCTGGGTTCTTCAGGAGGGGCCCTACAGCCTCACGGGCTCGGCGGACACAACAACAAAGCCAAGTCCGCCAGCCAGCTGGACGAGTCAGACTTTGGTCCTCTAGTGGGGGCAGACTGTGGGGGCTTTGACAGCATGGACACCTCCTCCATATCATCCCTCCAGCCAGGACACTTTCTCCTCACCAAGGACCAGGAGAAGGCCATTAAGGCCATGACCCCAGAGCAGGAGGAGACCGCATCGCTCCTGTCCAGCATCTCTCATACAGCTGATACGGCTTACCTGCCTCCGTCTGGCTACCGACTGGTCAGCGAGAGCGAGTGGAATCTGCTGCAGCAAGAGTTGAAGAACGCTGGAAGGAAGTTGGGGCGGCGATGTGATATGTGCTCTAATTATGAAAAACAGCTGCAGGTCATTCAGGGACAAGAGGCCGAGACACGGGatcagGTTAAAAAGCTTCAGGCCATGTTACGGCAGGCCAACGATCAACTGGAGCGGACGATGAATGAGAGGCAAGAGTTAGAGGACTCTGTCAAACAGGCCAATGAGGAAACTACTGCCAAGATCTCCGAGTTGAAGCAGAAAGTTCAGGAGTCTGAATCTCTCATAAGCGCTCTCCAACAGACCTTCAGCCAGGCCAAGAGGAACACCCAGGAACAGATGgctgTGCTGCTACAGTCCAGAGAGCAGGTGACTGAAGAGCTTAACAGACTGCAGAGAGATAATGAGAGTCTTCAGGGTAAACACAGACTTCACATGACGCTGCAGCAGCAAGAGGACTTTCACATGCCCACCACTGTACAGGAGCTTCAGAAGCTGGTGCTTCAGTACAGGGAGGACATTGTTTCTGCACGCACAGCAGCAGAGCATTTGGAGGAGAAGCTAAAGGCTGAAATTCTGTTCTTGAAGGAGCAGATTCAGGCAGAGCAGTGTCTCAAAGAGAATCTGGAGGACACTCTACAGCTGGAGATTGAGGGCTGTAAAGAAGAGATCGACATCCTGGAAGCGTCTTTTTCCAGCTTGAAAACAGAACTGGAAAGAGTGAAGACTGAAAAGGAACAGCTGGAGAGCAGCTTGGCAGAGAAGAGACAGATGCTGGAGAGCGTCCAAGGCCTGAAGAACAGTCTGGAGGAACAGTTAAAAGATGCCCTCGGCAGCAAGagTGCTTTGGAGACTCAGGTGTTTGAAGAGAAAGACAAGGCACAGAGACTTCAGACAGAGCTGGATGTCAGCGAGCAGGTCCAGAGAGATTTCGTCAAGCTGTCCCAAACCCTTCAGGTGCAACTGGAGCGCATCCGGCAAGCGGACTCATTAGAGAGGATCCGTGCTATCCTCAACGACACCAACCTTACAGACATCAGCCAGCTTCCTGAGacatgatgtcacttcctctgTATGACTCCACTGTGCACATAAACACACCCTCCACCTGTACCCCAGATCTACGGCCTGACTCCATCAAGACAAACCAAACCGAGTGAGGACGACCTGAGTGAACACTACTGACTTCTACTACTGCTATCCAGTTCATACAAACGTTCTCAAGCGCATGCAAAGACTCCGTCTCAGTTTGACTGAAGGTTTTGTCCCTTCTGATGCAGTCTCCAAAACCGGATTTCTGCAAATCTTTCAACAAACGCtgcttttgtttctctttcagTTCAGGAAACGAATGGGTCCGTGAGGATCAACTGACATGACTGTCCCATTCCCAAAAGTTCCCTTCTCTTCCTTCCTCGTCTTTCCATCTGCTAAGCTAGCAGCGGTGACCTATGAAGGAAACGGACACTTCCGAAGTGTTTTGTACATACTTGTATACAgattatttgtgtatattgcGTTAGTTAAGTTAATACACAAGACTGTGATTCCCTTTTTGACCCGCCTCCTACGTTTTCACAAGCGACACTGTGTTTCTCCTCGTCCGCCAATCATTTCACTGGGATGTAATTACTAGCTGCGTCGCTTTTCATCAACATTCGTCTTCTTAGACCCTTCAAGTTCTCCACTTTTTGGTTTTCTTCTACACTTCCTGGCAATTTATCAAAATTGGTGACCTTTTGCTTGAAGTTACTGCTACTTTTGTTCGAACCGACTGCTGTTTCTGCATATTGTTCTGCGTGtaagtgtgttttcttttttttttgaaggataTTGCAAACACATCTGATGATTTTTACAGTGAACGTCCGGTCTGGTCTTGATATTCACTTGATTGGTGTGGAGTATACGGCAACAGCATTTACACCGACCGTTTTAGAAAGCATTTTATCCATCATTctgctgtttgtgtatttaatgaAAGCACACTATTCTTATGGTTTTCAGTTATCAGTACCTTGTTAAAGGGTATAATAATCTGTTTAATTCTGCTCTGGGTGTGGCTTAAACAGAATCTCGTTTGGGATTGGCAGAACCAAAGCTGATCATGTTAACTTTAAATTTACAAAGAGAAGATGAAAACATAGAAAGGGCTGATGGCTCacgtttactttaaaaataatggaTACAATGTAACTCAACTACAGGAAACAAGTGCGTGATTTATTTTCGTTagtctatattatttttttagagacCGGAAGACCTGAAGCGGCATGTGCTTTCTGGCAcggtcttttaaaaataaagtaaaaatatatatatctatttttattgaGTTAACTTAGTCTTGATTAAAAGCTCCTGTGGCTTGAAAATGAGAATTGGCTGAAATTTAGAAAGACCTCTACCTGCATGTTAAGCATTGTCTGCTGATTTTGTAAGAGAGAGGACAGTTAGAATTCAGACTAAATATTCCACGTATTGAAATGTGTGGCTTTTCACGTCGATAAACACAATGAACTGCGTTTCCTGAGAAAAACCGAGCACTATCAACTACATCTGATGAGCACACAGAACTCAAACAACGCTACTATAGTCCATGAGCAGGCTCTCCTCTGTGAATATGCGCATCATCATATTAAGACCACGTGTGTTGTGGGTTTTATTGTTCATAAGCACCTCGAGTAACGGCCACTTCAATGTCTTCGTGTTTCACGAGAGCGACAGAAGCGATTCACGTCGGAACTACATTTTTCATTAGCAGATAATATATGAACTCTAATAACTGACGTGCGGCAAGAGACTACCGTTTTTAAcgacaaatgttttaaaaagacttttgagtataatttataattcatgGCAGTCATTTCTACTGGGTTTGTGAAGTGATAGTTCAGATACTTTCACGTTAGCGGTTATATTTCTGTTCCTTTGCATGCCGTGTTGCAAATGCAGAAGCCCTTGCAGatttatatactgtactgtgtacatatccctgtatatatctatataataaaacaaaaaattggaTTTGAA

Function

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K12480 RABEP1; Rab GTPase-binding effector protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57216 lncRNA downstream 6918 22873971 ~ 22876437 (-) True G38658
TU57176 lncRNA downstream 90302 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 90302 22791710 ~ 22793053 (-) False G38634
TU57040 lncRNA downstream 842136 22038380 ~ 22041219 (-) False LOC122344815
TU57350 lncRNA upstream 135564 23036457 ~ 23037470 (-) True G38747
TU57383 lncRNA upstream 226326 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 444696 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 456681 23357574 ~ 23358147 (-) True G38769
XR_006250995.1 lncRNA upstream 701343 23602236 ~ 23605748 (-) True LOC122345364
XM_043239969.1 mRNA downstream 8484 22844746 ~ 22874871 (-) False vps37d
XM_043239968.1 mRNA downstream 10444 22844746 ~ 22872911 (-) True vps37d
XM_043238402.1 mRNA downstream 48032 22832643 ~ 22835323 (-) True prkrip1
XM_043238401.1 mRNA downstream 51621 22826309 ~ 22831734 (-) True upk3b
XM_043240617.1 mRNA downstream 59489 22793505 ~ 22823866 (-) False rasa4
XM_043240907.1 mRNA upstream 6008 22906901 ~ 22910871 (-) True derl2
XM_043240446.1 mRNA upstream 144509 23045402 ~ 23049958 (-) False cenatac
XM_043240445.1 mRNA upstream 144509 23045402 ~ 23049958 (-) False cenatac
XM_043240444.1 mRNA upstream 144509 23045402 ~ 23049958 (-) True cenatac
XM_043240857.1 mRNA upstream 150043 23050936 ~ 23054269 (-) False foxr1
XR_006251119.1 other downstream 843321 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 923471 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 999333 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 999333 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1057250 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 701351 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 850987 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 986410 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1296812 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1687135 24588028 ~ 24594116 (-) False anapc2

Expression Profile