RNA id: XM_043239969.1


Basic Information

Item Value
RNA id XM_043239969.1
length 1253
RNA type mRNA
GC content 0.55
exon number 4
gene id vps37d
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22844746 ~ 22874871 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTGGCAAACGGAGTTGTTTAGTGCGCCTCACGGGGACGAGAATGTCCCAGAAAAGGGACGTGAACTCTTACCCAGATGGGTACAGGGTCCTCAATAGCGGTGAACTACGGGAGCTCCTacaagatgaagaaaaaatgaaTCAGATCGTGCGACTCAGTGAAAAGTTCCAGGAGCTCCAGCTGGACAGGGAAACCTTGCTAGTAACCAATCGGAGTCTTGCAGAAGAGAGCCTCACACATCGCCCTCACCTTCAAAACGGCAAGCGGCAATTGGCTGCAAAGTACGAGGAACTGGCAAAACTGACCACCGCCTGCAGGGAAAAGCAAAGCCGACTTGAGGCCTTCACGGAGAAGCACAGCCCTCAGACAGCTCACAGTCTCGTCCAGGAGGAGGTCGCACGTGCCGAAGAGCAGTCCGAGGACTTGCTGGAGAGGTTCATGGAGGGCCACGTGCCCCTGGAGGAATTCCTTGATTCTTTTCAAAGCCACAGGAAGACGTACCACATCCGCCGCGCTCAAGCCGAGAAGCTCCAGGAGCTCAACAGAGCCGACAGGAAACCGAAGAAACGGGAGGAGGAGCTGAAGAGGGAGGAGGAACATAAGGAGTCCCGGCCGAACGGCCTCAGCGCGCACGGCCCTCCCCGTGTCTTCCAGCTCCGATACGGTCTGACCCCGGCCATCCTGCTCCCGCTTTCCTCTTCCTCCGCTTCGGTCCTACCTCCTCTGGACTCCCGCTCAGGCCAGGCGCAGGTCTCGGGGCCCTGCGCCCGTCACTCCTGCCCCGGGCAGCCCGTCGGCCTGAGAGTAATTGGACAGTTACCCGGGTGGCCGGTGAGACCGGTCCGATTGCAGCAGCTGTACAGGCCCAGTCCCCATCAGCCCGAGCCTCCGTGTCGATAACATGAAAGCCGAGTTGCGCAGAGACCACGCGAAGCCTTCATCGAGTCGATATATAACAATGATGCTGCCATGAAATCAAACCTTCATGCACCCAAAAAGGGAGGAGAGAGGAAAGCCATAAAGTATTTGTTAATGTCGCTTGTCGTTGTTGCTCGTTCGTTTCACTTTCAACCTGTTTAGTATTCGTGTGGGTTTAGTCGGGATATTTGTGTGAGGGGAAGTGCCCTGTTTCTTGAGACACTGCTTTTTGACTGGAAGGTCTTTTGGGCCGTTGAGGGACTTGGAAAATGGCCcctttttgtaatgtttatggGTGTTCAATAAAGTCTAATcatgatgtttattttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57176 lncRNA downstream 51693 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 51693 22791710 ~ 22793053 (-) False G38634
XR_006250930.1 lncRNA downstream 803483 22038360 ~ 22041263 (-) True LOC122344815
TU57350 lncRNA upstream 161586 23036457 ~ 23037470 (-) True G38747
TU57383 lncRNA upstream 252348 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 470718 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 482703 23357574 ~ 23358147 (-) True G38769
XR_006250995.1 lncRNA upstream 727365 23602236 ~ 23605748 (-) True LOC122345364
XM_043238402.1 mRNA downstream 9423 22832643 ~ 22835323 (-) True prkrip1
XM_043238401.1 mRNA downstream 13012 22826309 ~ 22831734 (-) True upk3b
XM_043240617.1 mRNA downstream 20880 22793505 ~ 22823866 (-) False rasa4
XM_043240616.1 mRNA downstream 20883 22793505 ~ 22823863 (-) True rasa4
XM_043239957.1 mRNA downstream 53939 22761711 ~ 22790807 (-) True clip2
XM_043239962.1 mRNA upstream 8484 22883355 ~ 22900893 (-) False rabep1
XM_043239961.1 mRNA upstream 8484 22883355 ~ 22900893 (-) True rabep1
XM_043240907.1 mRNA upstream 32030 22906901 ~ 22910871 (-) True derl2
XM_043240446.1 mRNA upstream 170531 23045402 ~ 23049958 (-) False cenatac
XM_043240445.1 mRNA upstream 170531 23045402 ~ 23049958 (-) False cenatac
XR_006251119.1 other downstream 804712 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 884862 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 960724 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 960724 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1018641 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 727373 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 877009 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1012432 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1322834 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1713157 24588028 ~ 24594116 (-) False anapc2

Expression Profile